RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TEFQ10587 303 aa20.35■□□□□ 0.85
COL4A1-204ENST00000543140 CACNA1FO60840 1977 aa20.34■□□□□ 0.85
COL4A1-204ENST00000543140 KIF1AQ12756 1690 aa20.34■□□□□ 0.85
COL4A1-204ENST00000543140 AKAP4Q5JQC9 854 aa20.34■□□□□ 0.85
COL4A1-204ENST00000543140 PLEKHM2Q8IWE5 1019 aa20.34■□□□□ 0.85
COL4A1-204ENST00000543140 PHAXQ9H814 394 aaKnown RBP20.34■□□□□ 0.85
COL4A1-204ENST00000543140 NFKBIBQ15653 356 aa20.34■□□□□ 0.85
COL4A1-204ENST00000543140 TBC1D2Q9BYX2 928 aa20.34■□□□□ 0.85
COL4A1-204ENST00000543140 OTUD7AQ8TE49 926 aaPredicted RBP20.33■□□□□ 0.85
COL4A1-204ENST00000543140 SLKQ9H2G2 1235 aaPredicted RBP20.33■□□□□ 0.85
COL4A1-204ENST00000543140 PXDNQ92626 1479 aa20.33■□□□□ 0.85
COL4A1-204ENST00000543140 EIF4A1P60842 406 aaKnown RBP20.33■□□□□ 0.84
COL4A1-204ENST00000543140 C1orf141Q5JVX7 400 aa20.33■□□□□ 0.84
COL4A1-204ENST00000543140 MST1RQ04912 1400 aa20.33■□□□□ 0.84
COL4A1-204ENST00000543140 BTBD11A6QL63 1104 aa20.32■□□□□ 0.84
COL4A1-204ENST00000543140 AMOTQ4VCS5 1084 aa20.32■□□□□ 0.84
COL4A1-204ENST00000543140 TBC1D9Q6ZT07 1266 aa20.31■□□□□ 0.84
COL4A1-204ENST00000543140 CABLES1Q8TDN4 633 aa20.31■□□□□ 0.84
COL4A1-204ENST00000543140 USP35Q9P2H5 1018 aa20.31■□□□□ 0.84
COL4A1-204ENST00000543140 SOS1Q07889 1333 aaPredicted RBP20.31■□□□□ 0.84
COL4A1-204ENST00000543140 LMO7Q8WWI1 1683 aa20.31■□□□□ 0.84
COL4A1-204ENST00000543140 GNAI2P04899 355 aa20.31■□□□□ 0.84
COL4A1-204ENST00000543140 GSPT1P15170 499 aaKnown RBP20.31■□□□□ 0.84
COL4A1-204ENST00000543140 RNMTO43148 476 aaKnown RBP20.3■□□□□ 0.84
COL4A1-204ENST00000543140 HMMRO75330 724 aa20.3■□□□□ 0.84
COL4A1-204ENST00000543140 SPRYD3Q8NCJ5 442 aa20.3■□□□□ 0.84
COL4A1-204ENST00000543140 MED1Q15648 1581 aaPredicted RBP20.3■□□□□ 0.84
COL4A1-204ENST00000543140 ALS2Q96Q42 1657 aa20.29■□□□□ 0.84
COL4A1-204ENST00000543140 CHPF2Q9P2E5 772 aa20.29■□□□□ 0.84
COL4A1-204ENST00000543140 ERBB3P21860 1342 aa20.29■□□□□ 0.84
COL4A1-204ENST00000543140 ANXA1P04083 346 aa20.28■□□□□ 0.84
COL4A1-204ENST00000543140 KDM3BQ7LBC6 1761 aa20.28■□□□□ 0.84
COL4A1-204ENST00000543140 NLRP2Q9NX02 1062 aa20.28■□□□□ 0.84
COL4A1-204ENST00000543140 EXOC6BQ9Y2D4 811 aa20.27■□□□□ 0.84
COL4A1-204ENST00000543140 NCAPD2Q15021 1401 aa20.27■□□□□ 0.84
COL4A1-204ENST00000543140 GNAI3P08754 354 aa20.27■□□□□ 0.84
COL4A1-204ENST00000543140 TTC22Q5TAA0 569 aa20.27■□□□□ 0.84
COL4A1-204ENST00000543140 LRRFIP2Q9Y608 721 aaKnown RBP20.26■□□□□ 0.83
COL4A1-204ENST00000543140 PNMA6EA0A0J9YXQ4 647 aa20.26■□□□□ 0.83
COL4A1-204ENST00000543140 FRAT2O75474 233 aaPredicted RBP20.26■□□□□ 0.83
COL4A1-204ENST00000543140 CADPS2Q86UW7 1296 aa20.26■□□□□ 0.83
COL4A1-204ENST00000543140 CDC45O75419 566 aa20.25■□□□□ 0.83
COL4A1-204ENST00000543140 RBM25P49756 843 aaKnown RBP20.25■□□□□ 0.83
COL4A1-204ENST00000543140 CHRNA2Q15822 529 aa20.25■□□□□ 0.83
COL4A1-204ENST00000543140 USP44Q9H0E7 712 aa20.25■□□□□ 0.83
COL4A1-204ENST00000543140 NPHP3Q7Z494 1330 aa20.23■□□□□ 0.83
COL4A1-204ENST00000543140 PRAMEF22A3QJZ6 481 aa20.23■□□□□ 0.83
COL4A1-204ENST00000543140 CSB-PGBD3P0DP91 1061 aa20.23■□□□□ 0.83
COL4A1-204ENST00000543140 RAPGEF4Q8WZA2 1011 aa20.23■□□□□ 0.83
COL4A1-204ENST00000543140 CAMTA1Q9Y6Y1 1673 aa20.23■□□□□ 0.83
COL4A1-204ENST00000543140 PI4KAP2A4QPH2 592 aa20.22■□□□□ 0.83
COL4A1-204ENST00000543140 HOXB7P09629 217 aa20.22■□□□□ 0.83
COL4A1-204ENST00000543140 UBTFL1P0CB47 393 aaPredicted RBP20.22■□□□□ 0.83
COL4A1-204ENST00000543140 PI4KAP1Q8N8J0 262 aa20.22■□□□□ 0.83
COL4A1-204ENST00000543140 DCCP43146 1447 aa20.22■□□□□ 0.83
COL4A1-204ENST00000543140 ATP8B2P98198 1209 aa20.22■□□□□ 0.83
COL4A1-204ENST00000543140 SRCIN1Q9C0H9 1055 aa20.22■□□□□ 0.83
COL4A1-204ENST00000543140 ANTXR1Q9H6X2 564 aa20.22■□□□□ 0.83
COL4A1-204ENST00000543140 SDSP20132 328 aa20.21■□□□□ 0.83
COL4A1-204ENST00000543140 PXDNLA1KZ92 1463 aa20.2■□□□□ 0.82
COL4A1-204ENST00000543140 N4BP2Q86UW6 1770 aaPredicted RBP20.2■□□□□ 0.82
COL4A1-204ENST00000543140 GIGYF1O75420 1035 aaPredicted RBP20.2■□□□□ 0.82
COL4A1-204ENST00000543140 PROSER3Q2NL68 480 aa20.19■□□□□ 0.82
COL4A1-204ENST00000543140 TSHZ3Q63HK5 1081 aa20.19■□□□□ 0.82
COL4A1-204ENST00000543140 HSCBQ8IWL3 235 aa20.19■□□□□ 0.82
COL4A1-204ENST00000543140 DNAAF4Q8WXU2 420 aa20.19■□□□□ 0.82
COL4A1-204ENST00000543140 KIF2CQ99661 725 aa20.19■□□□□ 0.82
COL4A1-204ENST00000543140 TNS3Q68CZ2 1445 aa20.19■□□□□ 0.82
COL4A1-204ENST00000543140 NBPF7P0C2Y1 421 aaPredicted RBP20.18■□□□□ 0.82
COL4A1-204ENST00000543140 LRRCC1Q9C099 1032 aa20.18■□□□□ 0.82
COL4A1-204ENST00000543140 DBF4Q9UBU7 674 aaPredicted RBP20.18■□□□□ 0.82
COL4A1-204ENST00000543140 NCOA3Q9Y6Q9 1424 aa20.18■□□□□ 0.82
COL4A1-204ENST00000543140 SLC39A6Q13433 755 aa20.18■□□□□ 0.82
COL4A1-204ENST00000543140 TATP17735 454 aaPredicted RBP20.17■□□□□ 0.82
COL4A1-204ENST00000543140 PDE1AP54750 535 aa20.17■□□□□ 0.82
COL4A1-204ENST00000543140 CHMP4AQ9BY43 222 aa20.17■□□□□ 0.82
COL4A1-204ENST00000543140 BEND3Q5T5X7 828 aa20.17■□□□□ 0.82
COL4A1-204ENST00000543140 SPATA31A3Q5VYP0 1347 aa20.16■□□□□ 0.82
COL4A1-204ENST00000543140 OVOS2A0A0G2JMS6 1433 aa20.16■□□□□ 0.82
COL4A1-204ENST00000543140 COL18A1P39060 1754 aa20.16■□□□□ 0.82
COL4A1-204ENST00000543140 ADCY9O60503 1353 aa20.16■□□□□ 0.82
COL4A1-204ENST00000543140 RBM42Q9BTD8 480 aaKnown RBP20.16■□□□□ 0.82
COL4A1-204ENST00000543140 XIRP1Q702N8 1843 aaKnown RBP20.16■□□□□ 0.82
COL4A1-204ENST00000543140 SIPA1L3O60292 1781 aaPredicted RBP20.16■□□□□ 0.82
COL4A1-204ENST00000543140 MEGF6O75095 1541 aa20.15■□□□□ 0.82
COL4A1-204ENST00000543140 NFATC2IPQ8NCF5 419 aa20.15■□□□□ 0.82
COL4A1-204ENST00000543140 BRINP3Q76B58 766 aa20.15■□□□□ 0.82
COL4A1-204ENST00000543140 PPP1R42Q7Z4L9 355 aa20.15■□□□□ 0.82
COL4A1-204ENST00000543140 IBTKQ9P2D0 1353 aaPredicted RBP20.14■□□□□ 0.82
COL4A1-204ENST00000543140 PHKG2P15735 406 aa20.14■□□□□ 0.82
COL4A1-204ENST00000543140 SPG7Q9UQ90 795 aa20.14■□□□□ 0.82
COL4A1-204ENST00000543140 MAP3K2Q9Y2U5 619 aa20.14■□□□□ 0.82
COL4A1-204ENST00000543140 CRYBG1Q9Y4K1 1723 aa20.14■□□□□ 0.81
COL4A1-204ENST00000543140 HEG1Q9ULI3 1381 aa20.14■□□□□ 0.81
COL4A1-204ENST00000543140 KDM6AO15550 1401 aaPredicted RBP20.13■□□□□ 0.81
COL4A1-204ENST00000543140 SSH3Q8TE77 659 aa20.13■□□□□ 0.81
COL4A1-204ENST00000543140 OSBPL3Q9H4L5 887 aa20.13■□□□□ 0.81
COL4A1-204ENST00000543140 SLC52A2Q9HAB3 445 aa20.13■□□□□ 0.81
COL4A1-204ENST00000543140 IL1RAPL2Q9NP60 686 aa20.13■□□□□ 0.81
COL4A1-204ENST00000543140 SRGAP3O43295 1099 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms