RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 GNPATO15228 680 aa21.39■■□□□ 1.01
CLSTN3-213ENST00000541953 SSFA2P28290 1259 aa21.39■■□□□ 1.01
CLSTN3-213ENST00000541953 IFNL2Q8IZJ0 200 aa21.39■■□□□ 1.01
CLSTN3-213ENST00000541953 ATP6V1AP38606 617 aa21.38■■□□□ 1.01
CLSTN3-213ENST00000541953 PCGF6Q9BYE7 350 aa21.38■■□□□ 1.01
CLSTN3-213ENST00000541953 HSPA5P11021 654 aaKnown RBP21.37■■□□□ 1.01
CLSTN3-213ENST00000541953 C4AP0C0L4 1744 aa21.36■■□□□ 1.01
CLSTN3-213ENST00000541953 AEBP1Q8IUX7 1158 aa21.36■■□□□ 1.01
CLSTN3-213ENST00000541953 TIMELESSQ9UNS1 1208 aa21.36■■□□□ 1.01
CLSTN3-213ENST00000541953 ZNF831Q5JPB2 1677 aa21.36■■□□□ 1.01
CLSTN3-213ENST00000541953 CICQ96RK0 1608 aaPredicted RBP21.36■■□□□ 1.01
CLSTN3-213ENST00000541953 KIF13BQ9NQT8 1826 aa21.36■■□□□ 1.01
CLSTN3-213ENST00000541953 N4BP2Q86UW6 1770 aaPredicted RBP21.36■■□□□ 1.01
CLSTN3-213ENST00000541953 PANK3Q9H999 370 aa21.35■■□□□ 1.01
CLSTN3-213ENST00000541953 MYH14Q7Z406 1995 aaKnown RBP21.35■■□□□ 1.01
CLSTN3-213ENST00000541953 PXDNLA1KZ92 1463 aa21.33■■□□□ 1.01
CLSTN3-213ENST00000541953 ZNF526Q8TF50 670 aaPredicted RBP21.32■■□□□ 1
CLSTN3-213ENST00000541953 TJP1Q07157 1748 aa21.32■■□□□ 1
CLSTN3-213ENST00000541953 CLSPNQ9HAW4 1339 aa21.31■■□□□ 1
CLSTN3-213ENST00000541953 MMP10P09238 476 aa21.31■■□□□ 1
CLSTN3-213ENST00000541953 RBM42Q9BTD8 480 aaKnown RBP21.3■■□□□ 1
CLSTN3-213ENST00000541953 PLEKHG2Q9H7P9 1386 aa21.3■■□□□ 1
CLSTN3-213ENST00000541953 ZNF530Q6P9A1 599 aaPredicted RBP21.29■■□□□ 1
CLSTN3-213ENST00000541953 C10orf71Q711Q0 1435 aa21.29■■□□□ 1
CLSTN3-213ENST00000541953 ERVV-2B6SEH9 535 aa21.28■■□□□ 1
CLSTN3-213ENST00000541953 HMGB2P26583 209 aaKnown RBP21.28■■□□□ 1
CLSTN3-213ENST00000541953 EIF4G2P78344 907 aaKnown RBP eCLIP21.28■■□□□ 1
CLSTN3-213ENST00000541953 BRCA1P38398 1863 aaKnown RBP21.28■■□□□ 1
CLSTN3-213ENST00000541953 DCAF5Q96JK2 942 aa21.27■■□□□ 1
CLSTN3-213ENST00000541953 SCN11AQ9UI33 1791 aa21.26■□□□□ 0.99
CLSTN3-213ENST00000541953 ADAMTS7Q9UKP4 1686 aa21.26■□□□□ 0.99
CLSTN3-213ENST00000541953 ARHGEF1Q92888 912 aaKnown RBP21.26■□□□□ 0.99
CLSTN3-213ENST00000541953 PLEKHO1Q53GL0 409 aaPredicted RBP21.25■□□□□ 0.99
CLSTN3-213ENST00000541953 GPBP1L1Q9HC44 474 aaPredicted RBP21.25■□□□□ 0.99
CLSTN3-213ENST00000541953 RTCBQ9Y3I0 505 aaKnown RBP21.25■□□□□ 0.99
CLSTN3-213ENST00000541953 CNTNAP4Q9C0A0 1308 aa21.25■□□□□ 0.99
CLSTN3-213ENST00000541953 GYS1P13807 737 aa21.24■□□□□ 0.99
CLSTN3-213ENST00000541953 TRAPPC3LQ5T215 181 aa21.24■□□□□ 0.99
CLSTN3-213ENST00000541953 VIRMAQ69YN4 1812 aaKnown RBP21.23■□□□□ 0.99
CLSTN3-213ENST00000541953 A0A0G2JLW4 131 aa21.23■□□□□ 0.99
CLSTN3-213ENST00000541953 PTCD1O75127 700 aaKnown RBP21.23■□□□□ 0.99
CLSTN3-213ENST00000541953 CABP4P57796 275 aa21.23■□□□□ 0.99
CLSTN3-213ENST00000541953 MORC1Q86VD1 984 aa21.23■□□□□ 0.99
CLSTN3-213ENST00000541953 HSP90AB1P08238 724 aaKnown RBP21.22■□□□□ 0.99
CLSTN3-213ENST00000541953 IL13P35225 146 aa21.22■□□□□ 0.99
CLSTN3-213ENST00000541953 RC3H1Q5TC82 1133 aaKnown RBP21.22■□□□□ 0.99
CLSTN3-213ENST00000541953 SULT6B1Q6IMI4 303 aa21.22■□□□□ 0.99
CLSTN3-213ENST00000541953 SRP68Q9UHB9 627 aaKnown RBP21.22■□□□□ 0.99
CLSTN3-213ENST00000541953 RPS6KA4O75676 772 aa21.21■□□□□ 0.99
CLSTN3-213ENST00000541953 NFATC2IPQ8NCF5 419 aa21.21■□□□□ 0.99
CLSTN3-213ENST00000541953 MTHFSP49914 203 aa21.2■□□□□ 0.98
CLSTN3-213ENST00000541953 KIF3CO14782 793 aa21.19■□□□□ 0.98
CLSTN3-213ENST00000541953 DPEP1P16444 411 aa21.19■□□□□ 0.98
CLSTN3-213ENST00000541953 AMOTQ4VCS5 1084 aa21.19■□□□□ 0.98
CLSTN3-213ENST00000541953 AMER1Q5JTC6 1135 aaPredicted RBP21.19■□□□□ 0.98
CLSTN3-213ENST00000541953 BCS1LQ9Y276 419 aa21.19■□□□□ 0.98
CLSTN3-213ENST00000541953 ADRA2BP18089 450 aa21.18■□□□□ 0.98
CLSTN3-213ENST00000541953 CRKLP46109 303 aaKnown RBP21.18■□□□□ 0.98
CLSTN3-213ENST00000541953 NLGN1Q8N2Q7 840 aa21.18■□□□□ 0.98
CLSTN3-213ENST00000541953 KCNA3P22001 575 aa21.17■□□□□ 0.98
CLSTN3-213ENST00000541953 RFC4P35249 363 aa21.17■□□□□ 0.98
CLSTN3-213ENST00000541953 DDR1Q08345 913 aa21.17■□□□□ 0.98
CLSTN3-213ENST00000541953 FKBP8Q14318 412 aa21.17■□□□□ 0.98
CLSTN3-213ENST00000541953 C1orf141Q5JVX7 400 aa21.17■□□□□ 0.98
CLSTN3-213ENST00000541953 MRC1P22897 1456 aa21.17■□□□□ 0.98
CLSTN3-213ENST00000541953 ARFGEF1Q9Y6D6 1849 aa21.16■□□□□ 0.98
CLSTN3-213ENST00000541953 TGFB2P61812 414 aa21.16■□□□□ 0.98
CLSTN3-213ENST00000541953 LGR6Q9HBX8 967 aa21.16■□□□□ 0.98
CLSTN3-213ENST00000541953 KCPQ6ZWJ8 1503 aa21.15■□□□□ 0.98
CLSTN3-213ENST00000541953 KIF7Q2M1P5 1343 aa21.15■□□□□ 0.98
CLSTN3-213ENST00000541953 USP42Q9H9J4 1324 aaKnown RBP21.15■□□□□ 0.98
CLSTN3-213ENST00000541953 INTS5Q6P9B9 1019 aaKnown RBP21.15■□□□□ 0.98
CLSTN3-213ENST00000541953 HSPA6P17066 643 aa21.14■□□□□ 0.97
CLSTN3-213ENST00000541953 DNAJC10Q8IXB1 793 aa21.14■□□□□ 0.97
CLSTN3-213ENST00000541953 CCDC87Q9NVE4 849 aa21.14■□□□□ 0.97
CLSTN3-213ENST00000541953 KNSTRNQ9Y448 316 aa21.14■□□□□ 0.97
CLSTN3-213ENST00000541953 HMOX1P09601 288 aa21.13■□□□□ 0.97
CLSTN3-213ENST00000541953 PARP3Q9Y6F1 533 aa21.13■□□□□ 0.97
CLSTN3-213ENST00000541953 SLC39A6Q13433 755 aa21.12■□□□□ 0.97
CLSTN3-213ENST00000541953 CCER1Q8TC90 406 aaPredicted RBP21.12■□□□□ 0.97
CLSTN3-213ENST00000541953 AFDNP55196 1824 aaKnown RBP21.11■□□□□ 0.97
CLSTN3-213ENST00000541953 FCHSD2O94868 740 aa21.11■□□□□ 0.97
CLSTN3-213ENST00000541953 ARHGAP27Q6ZUM4 889 aa21.11■□□□□ 0.97
CLSTN3-213ENST00000541953 UBR2Q8IWV8 1755 aa21.1■□□□□ 0.97
CLSTN3-213ENST00000541953 AKAP4Q5JQC9 854 aa21.1■□□□□ 0.97
CLSTN3-213ENST00000541953 SLC52A2Q9HAB3 445 aa21.1■□□□□ 0.97
CLSTN3-213ENST00000541953 SOS1Q07889 1333 aaPredicted RBP21.09■□□□□ 0.97
CLSTN3-213ENST00000541953 COL3A1P02461 1466 aaPredicted RBP21.09■□□□□ 0.97
CLSTN3-213ENST00000541953 CHRNA5P30532 468 aa21.09■□□□□ 0.97
CLSTN3-213ENST00000541953 NMRK2Q9NPI5 230 aa21.09■□□□□ 0.97
CLSTN3-213ENST00000541953 POLRMTO00411 1230 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-213ENST00000541953 RNMTO43148 476 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-213ENST00000541953 NRXN2Q9P2S2 1712 aa21.07■□□□□ 0.96
CLSTN3-213ENST00000541953 PER1O15534 1290 aaPredicted RBP21.07■□□□□ 0.96
CLSTN3-213ENST00000541953 MTHFSDQ2M296 383 aaKnown RBP21.07■□□□□ 0.96
CLSTN3-213ENST00000541953 USPL1Q5W0Q7 1092 aa21.07■□□□□ 0.96
CLSTN3-213ENST00000541953 CYP19A1P11511 503 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-213ENST00000541953 TM4SF1P30408 202 aa21.06■□□□□ 0.96
CLSTN3-213ENST00000541953 ZBTB1Q9Y2K1 713 aa21.06■□□□□ 0.96
CLSTN3-213ENST00000541953 SBF1O95248 1867 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms