RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 UNC5CLQ8IV45 518 aa9.46□□□□□ -0.9
VPS53-205ENST00000541903 PPP4R2Q9NY27 417 aa9.46□□□□□ -0.9
VPS53-205ENST00000541903 THRAP3Q9Y2W1 955 aaKnown RBP9.46□□□□□ -0.9
VPS53-205ENST00000541903 SPATA31A1Q5TZJ5 1347 aa9.46□□□□□ -0.9
VPS53-205ENST00000541903 MRC1P22897 1456 aa9.46□□□□□ -0.9
VPS53-205ENST00000541903 BRPF1P55201 1214 aaPredicted RBP9.45□□□□□ -0.9
VPS53-205ENST00000541903 CABP4P57796 275 aa9.45□□□□□ -0.9
VPS53-205ENST00000541903 KRT24Q2M2I5 525 aa9.45□□□□□ -0.9
VPS53-205ENST00000541903 DDX54Q8TDD1 881 aaKnown RBP9.45□□□□□ -0.9
VPS53-205ENST00000541903 CRBNQ96SW2 442 aa9.45□□□□□ -0.9
VPS53-205ENST00000541903 SLC52A2Q9HAB3 445 aa9.45□□□□□ -0.9
VPS53-205ENST00000541903 SPATA31A5Q5VU36 1347 aa9.45□□□□□ -0.9
VPS53-205ENST00000541903 SPATA31A7Q8IWB4 1347 aa9.45□□□□□ -0.9
VPS53-205ENST00000541903 C20orf194Q5TEA3 1177 aa9.44□□□□□ -0.9
VPS53-205ENST00000541903 FTSJ3Q8IY81 847 aaKnown RBP9.44□□□□□ -0.9
VPS53-205ENST00000541903 MRPL50Q8N5N7 158 aaKnown RBP9.44□□□□□ -0.9
VPS53-205ENST00000541903 EXOC6Q8TAG9 804 aa9.44□□□□□ -0.9
VPS53-205ENST00000541903 CHMP4AQ9BY43 222 aa9.44□□□□□ -0.9
VPS53-205ENST00000541903 TNS2Q63HR2 1409 aa9.44□□□□□ -0.9
VPS53-205ENST00000541903 ERVV-2B6SEH9 535 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 EXOC5O00471 708 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 TCERG1O14776 1098 aaKnown RBP9.43□□□□□ -0.9
VPS53-205ENST00000541903 HOXB7P09629 217 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 EIF4A1P60842 406 aaKnown RBP9.43□□□□□ -0.9
VPS53-205ENST00000541903 NKX1-1Q15270 411 aaPredicted RBP9.43□□□□□ -0.9
VPS53-205ENST00000541903 VPS72Q15906 364 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 CCDC30Q5VVM6 783 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 ATF7IPQ6VMQ6 1270 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 BARGINQ6ZT62 677 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 DZIP1LQ8IYY4 767 aaKnown RBP9.43□□□□□ -0.9
VPS53-205ENST00000541903 TTC5Q8N0Z6 440 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 FNBP4Q8N3X1 1017 aaPredicted RBP9.43□□□□□ -0.9
VPS53-205ENST00000541903 STK31Q9BXU1 1019 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 USP21Q9UK80 565 aa9.43□□□□□ -0.9
VPS53-205ENST00000541903 NOB1Q9ULX3 412 aaKnown RBP9.43□□□□□ -0.9
VPS53-205ENST00000541903 WNK3Q9BYP7 1800 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 KDM3BQ7LBC6 1761 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 BCL9LQ86UU0 1499 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 TRIM27P14373 513 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 DDB1Q16531 1140 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 NFATC2IPQ8NCF5 419 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 PANK1Q8TE04 598 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 ARHGAP45Q92619 1136 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 API5Q9BZZ5 524 aaKnown RBP9.42□□□□□ -0.9
VPS53-205ENST00000541903 SCN11AQ9UI33 1791 aa9.42□□□□□ -0.9
VPS53-205ENST00000541903 KCNQ3O43525 872 aa9.41□□□□□ -0.9
VPS53-205ENST00000541903 HDGFL1Q5TGJ6 251 aa9.41□□□□□ -0.9
VPS53-205ENST00000541903 ZNF790Q6PG37 636 aa9.41□□□□□ -0.9
VPS53-205ENST00000541903 CLUAP1Q96AJ1 413 aa9.41□□□□□ -0.9
VPS53-205ENST00000541903 CCDC136Q96JN2 1154 aa9.41□□□□□ -0.9
VPS53-205ENST00000541903 COG6Q9Y2V7 657 aa9.41□□□□□ -0.9
VPS53-205ENST00000541903 SHANK3Q9BYB0 1731 aa9.41□□□□□ -0.9
VPS53-205ENST00000541903 SIPA1L3O60292 1781 aaPredicted RBP9.4□□□□□ -0.9
VPS53-205ENST00000541903 PTPRCP08575 1304 aa9.4□□□□□ -0.9
VPS53-205ENST00000541903 AFF2P51816 1311 aa9.4□□□□□ -0.9
VPS53-205ENST00000541903 SLC4A2P04920 1241 aa9.4□□□□□ -0.9
VPS53-205ENST00000541903 MVPQ14764 893 aaKnown RBP9.4□□□□□ -0.9
VPS53-205ENST00000541903 B4GALNT3Q6L9W6 998 aa9.4□□□□□ -0.9
VPS53-205ENST00000541903 TMOD3Q9NYL9 352 aa9.4□□□□□ -0.9
VPS53-205ENST00000541903 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.39□□□□□ -0.91
VPS53-205ENST00000541903 A0A0G2JS52 829 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 GIGYF1O75420 1035 aaPredicted RBP9.39□□□□□ -0.91
VPS53-205ENST00000541903 RLBP1P12271 317 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 EIF2S2P20042 333 aaKnown RBP9.39□□□□□ -0.91
VPS53-205ENST00000541903 MYT1Q01538 1121 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 SLC39A6Q13433 755 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 AAMPQ13685 434 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 FAM98CQ17RN3 349 aaKnown RBP9.39□□□□□ -0.91
VPS53-205ENST00000541903 ITPRIPQ8IWB1 547 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 PELP1Q8IZL8 1130 aaKnown RBP9.39□□□□□ -0.91
VPS53-205ENST00000541903 NECTIN2Q92692 538 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 FMNL2Q96PY5 1086 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 DDX19BQ9UMR2 479 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 TNNQ9UQP3 1299 aa9.39□□□□□ -0.91
VPS53-205ENST00000541903 HEG1Q9ULI3 1381 aa9.38□□□□□ -0.91
VPS53-205ENST00000541903 ABCC4O15439 1325 aa9.38□□□□□ -0.91
VPS53-205ENST00000541903 CHMP4BQ9H444 224 aaKnown RBP9.38□□□□□ -0.91
VPS53-205ENST00000541903 TRPC5Q9UL62 973 aaPredicted RBP9.38□□□□□ -0.91
VPS53-205ENST00000541903 ATRNO75882 1429 aa9.38□□□□□ -0.91
VPS53-205ENST00000541903 SNRPA1P09661 255 aaKnown RBP9.37□□□□□ -0.91
VPS53-205ENST00000541903 TMEM57Q8N5G2 664 aa9.37□□□□□ -0.91
VPS53-205ENST00000541903 ZNF496Q96IT1 587 aaPredicted RBP9.37□□□□□ -0.91
VPS53-205ENST00000541903 VIRMAQ69YN4 1812 aaKnown RBP9.37□□□□□ -0.91
VPS53-205ENST00000541903 TOGARAM1Q9Y4F4 1720 aa9.36□□□□□ -0.91
VPS53-205ENST00000541903 PAPPAQ13219 1627 aa9.36□□□□□ -0.91
VPS53-205ENST00000541903 FLIIQ13045 1269 aa9.36□□□□□ -0.91
VPS53-205ENST00000541903 FKBP5Q13451 457 aaPredicted RBP9.36□□□□□ -0.91
VPS53-205ENST00000541903 SYTL4Q96C24 671 aaPredicted RBP9.36□□□□□ -0.91
VPS53-205ENST00000541903 GJD4Q96KN9 370 aaPredicted RBP9.36□□□□□ -0.91
VPS53-205ENST00000541903 CHPF2Q9P2E5 772 aa9.36□□□□□ -0.91
VPS53-205ENST00000541903 DBF4Q9UBU7 674 aaPredicted RBP9.36□□□□□ -0.91
VPS53-205ENST00000541903 RGS12O14924 1447 aa9.36□□□□□ -0.91
VPS53-205ENST00000541903 BCL9O00512 1426 aa9.35□□□□□ -0.91
VPS53-205ENST00000541903 G2E3Q7L622 706 aa9.35□□□□□ -0.91
VPS53-205ENST00000541903 MARCH10Q8NA82 808 aaPredicted RBP9.35□□□□□ -0.91
VPS53-205ENST00000541903 PIGBQ92521 554 aa9.35□□□□□ -0.91
VPS53-205ENST00000541903 THSD7AQ9UPZ6 1657 aa9.35□□□□□ -0.91
VPS53-205ENST00000541903 KCPQ6ZWJ8 1503 aa9.35□□□□□ -0.91
VPS53-205ENST00000541903 GLI3P10071 1580 aa9.34□□□□□ -0.91
VPS53-205ENST00000541903 PRAMEF22A3QJZ6 481 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms