RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 SIK1P57059 783 aa13.57□□□□□ -0.24
YBX3-211ENST00000541351 MAP2K1Q02750 393 aaPredicted RBP13.57□□□□□ -0.24
YBX3-211ENST00000541351 CHADLQ6NUI6 762 aa13.57□□□□□ -0.24
YBX3-211ENST00000541351 HDGFL2Q7Z4V5 671 aaPredicted RBP13.57□□□□□ -0.24
YBX3-211ENST00000541351 SMG6Q86US8 1419 aaKnown RBP13.56□□□□□ -0.24
YBX3-211ENST00000541351 NBPF1Q3BBV0 1214 aa13.56□□□□□ -0.24
YBX3-211ENST00000541351 WBP1LQ9NX94 342 aa13.56□□□□□ -0.24
YBX3-211ENST00000541351 MEGF6O75095 1541 aa13.55□□□□□ -0.24
YBX3-211ENST00000541351 AMIGO3Q86WK7 504 aa13.55□□□□□ -0.24
YBX3-211ENST00000541351 NME9Q86XW9 330 aa13.55□□□□□ -0.24
YBX3-211ENST00000541351 BEGAINQ9BUH8 593 aa13.55□□□□□ -0.24
YBX3-211ENST00000541351 KIAA1551Q9HCM1 1747 aa13.55□□□□□ -0.24
YBX3-211ENST00000541351 TOGARAM1Q9Y4F4 1720 aa13.55□□□□□ -0.24
YBX3-211ENST00000541351 KCNA3P22001 575 aa13.54□□□□□ -0.24
YBX3-211ENST00000541351 RFC4P35249 363 aa13.54□□□□□ -0.24
YBX3-211ENST00000541351 ATP6V1AP38606 617 aa13.54□□□□□ -0.24
YBX3-211ENST00000541351 LINC00116Q8NCU8 138 aa13.54□□□□□ -0.24
YBX3-211ENST00000541351 CD163L1Q9NR16 1453 aa13.54□□□□□ -0.24
YBX3-211ENST00000541351 BRCA1P38398 1863 aaKnown RBP13.53□□□□□ -0.24
YBX3-211ENST00000541351 SMIM5Q71RC9 77 aa13.53□□□□□ -0.24
YBX3-211ENST00000541351 CFAP44Q96MT7 982 aa13.53□□□□□ -0.24
YBX3-211ENST00000541351 HOXC9P31274 260 aa13.52□□□□□ -0.25
YBX3-211ENST00000541351 TERF2IPQ9NYB0 399 aa13.52□□□□□ -0.25
YBX3-211ENST00000541351 KDM6AO15550 1401 aaPredicted RBP13.52□□□□□ -0.25
YBX3-211ENST00000541351 EDC4Q6P2E9 1401 aaKnown RBP13.52□□□□□ -0.25
YBX3-211ENST00000541351 C4AP0C0L4 1744 aa13.52□□□□□ -0.25
YBX3-211ENST00000541351 MON2Q7Z3U7 1717 aa13.51□□□□□ -0.25
YBX3-211ENST00000541351 TMEM88BA6NKF7 163 aa13.51□□□□□ -0.25
YBX3-211ENST00000541351 HSPA8P11142 646 aaKnown RBP13.51□□□□□ -0.25
YBX3-211ENST00000541351 VEGFBP49765 207 aa13.51□□□□□ -0.25
YBX3-211ENST00000541351 RTL1A6NKG5 1358 aa13.5□□□□□ -0.25
YBX3-211ENST00000541351 SBNO2Q9Y2G9 1366 aa13.5□□□□□ -0.25
YBX3-211ENST00000541351 COG3Q96JB2 828 aa13.5□□□□□ -0.25
YBX3-211ENST00000541351 TMOD3Q9NYL9 352 aa13.5□□□□□ -0.25
YBX3-211ENST00000541351 MAP3K19Q56UN5 1328 aa13.49□□□□□ -0.25
YBX3-211ENST00000541351 IQCA1LA6NCM1 817 aa13.49□□□□□ -0.25
YBX3-211ENST00000541351 GYS1P13807 737 aa13.49□□□□□ -0.25
YBX3-211ENST00000541351 RC3H1Q5TC82 1133 aaKnown RBP13.49□□□□□ -0.25
YBX3-211ENST00000541351 PIGBQ92521 554 aa13.49□□□□□ -0.25
YBX3-211ENST00000541351 SBF1O95248 1867 aa13.48□□□□□ -0.25
YBX3-211ENST00000541351 TMC1Q8TDI8 760 aa13.48□□□□□ -0.25
YBX3-211ENST00000541351 RASSF7Q02833 373 aa13.47□□□□□ -0.25
YBX3-211ENST00000541351 LDHDQ86WU2 507 aa13.47□□□□□ -0.25
YBX3-211ENST00000541351 ARHGEF1Q92888 912 aaKnown RBP13.47□□□□□ -0.25
YBX3-211ENST00000541351 PDE4DIPQ5VU43 2346 aa13.46□□□□□ -0.25
YBX3-211ENST00000541351 ITPK1Q13572 414 aa13.46□□□□□ -0.25
YBX3-211ENST00000541351 DEFB115Q30KQ5 88 aa13.46□□□□□ -0.25
YBX3-211ENST00000541351 NBPF6Q5VWK0 638 aa13.46□□□□□ -0.25
YBX3-211ENST00000541351 NBPF4Q96M43 638 aa13.46□□□□□ -0.25
YBX3-211ENST00000541351 SPG7Q9UQ90 795 aa13.46□□□□□ -0.25
YBX3-211ENST00000541351 RPS6KA4O75676 772 aa13.45□□□□□ -0.26
YBX3-211ENST00000541351 CHRNA5P30532 468 aa13.45□□□□□ -0.26
YBX3-211ENST00000541351 NKX1-1Q15270 411 aaPredicted RBP13.45□□□□□ -0.26
YBX3-211ENST00000541351 RAB3GAP2Q9H2M9 1393 aa13.45□□□□□ -0.26
YBX3-211ENST00000541351 PASKQ96RG2 1323 aa13.44□□□□□ -0.26
YBX3-211ENST00000541351 CNTNAP4Q9C0A0 1308 aa13.44□□□□□ -0.26
YBX3-211ENST00000541351 RASSF10A6NK89 507 aa13.44□□□□□ -0.26
YBX3-211ENST00000541351 CYP27B1O15528 508 aa13.44□□□□□ -0.26
YBX3-211ENST00000541351 ECE1P42892 770 aa13.44□□□□□ -0.26
YBX3-211ENST00000541351 ERFEQ4G0M1 354 aa13.44□□□□□ -0.26
YBX3-211ENST00000541351 PRPF38BQ5VTL8 546 aaKnown RBP13.44□□□□□ -0.26
YBX3-211ENST00000541351 TTLL6Q8N841 843 aa13.44□□□□□ -0.26
YBX3-211ENST00000541351 WDR33Q9C0J8 1336 aaKnown RBP13.43□□□□□ -0.26
YBX3-211ENST00000541351 POTECB2RU33 542 aa13.43□□□□□ -0.26
YBX3-211ENST00000541351 CA12O43570 354 aa13.43□□□□□ -0.26
YBX3-211ENST00000541351 USHBP1Q8N6Y0 703 aa13.43□□□□□ -0.26
YBX3-211ENST00000541351 MAP2P11137 1827 aaKnown RBP13.42□□□□□ -0.26
YBX3-211ENST00000541351 ITGB4P16144 1822 aa13.42□□□□□ -0.26
YBX3-211ENST00000541351 ASAP1Q9ULH1 1129 aa13.42□□□□□ -0.26
YBX3-211ENST00000541351 GCC1Q96CN9 775 aa13.41□□□□□ -0.26
YBX3-211ENST00000541351 TIAM2Q8IVF5 1701 aa13.41□□□□□ -0.26
YBX3-211ENST00000541351 ABT1Q9ULW3 272 aaKnown RBP13.4□□□□□ -0.26
YBX3-211ENST00000541351 PDZRN3Q9UPQ7 1066 aa13.4□□□□□ -0.26
YBX3-211ENST00000541351 VIRMAQ69YN4 1812 aaKnown RBP13.39□□□□□ -0.27
YBX3-211ENST00000541351 H0YIN7 160 aa13.39□□□□□ -0.27
YBX3-211ENST00000541351 RBM42Q9BTD8 480 aaKnown RBP13.39□□□□□ -0.27
YBX3-211ENST00000541351 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.39□□□□□ -0.27
YBX3-211ENST00000541351 ROCK2O75116 1388 aaKnown RBP13.39□□□□□ -0.27
YBX3-211ENST00000541351 USP42Q9H9J4 1324 aaKnown RBP13.39□□□□□ -0.27
YBX3-211ENST00000541351 A0A1W2PP64 1363 aa13.38□□□□□ -0.27
YBX3-211ENST00000541351 KIF24Q5T7B8 1368 aa13.38□□□□□ -0.27
YBX3-211ENST00000541351 ZPR1O75312 459 aa13.38□□□□□ -0.27
YBX3-211ENST00000541351 PNMA8AQ86V59 439 aaPredicted RBP13.38□□□□□ -0.27
YBX3-211ENST00000541351 IFNL2Q8IZJ0 200 aa13.38□□□□□ -0.27
YBX3-211ENST00000541351 MCOLN1Q9GZU1 580 aa13.38□□□□□ -0.27
YBX3-211ENST00000541351 ATG3Q9NT62 314 aa13.38□□□□□ -0.27
YBX3-211ENST00000541351 CLEC11AQ9Y240 323 aa13.38□□□□□ -0.27
YBX3-211ENST00000541351 RGPD2P0DJD1 1756 aa13.37□□□□□ -0.27
YBX3-211ENST00000541351 INSRP06213 1382 aa13.37□□□□□ -0.27
YBX3-211ENST00000541351 DDR1Q08345 913 aa13.37□□□□□ -0.27
YBX3-211ENST00000541351 PAXIP1Q6ZW49 1069 aaPredicted RBP13.37□□□□□ -0.27
YBX3-211ENST00000541351 PUS7Q96PZ0 661 aaKnown RBP13.37□□□□□ -0.27
YBX3-211ENST00000541351 SLC12A5Q9H2X9 1139 aa13.37□□□□□ -0.27
YBX3-211ENST00000541351 KDRP35968 1356 aa13.36□□□□□ -0.27
YBX3-211ENST00000541351 NFKBIEO00221 500 aa13.36□□□□□ -0.27
YBX3-211ENST00000541351 POLRMTO00411 1230 aaKnown RBP13.36□□□□□ -0.27
YBX3-211ENST00000541351 ITGBL1O95965 494 aaPredicted RBP13.36□□□□□ -0.27
YBX3-211ENST00000541351 POTEIP0CG38 1075 aa13.36□□□□□ -0.27
YBX3-211ENST00000541351 POTEJP0CG39 1038 aa13.36□□□□□ -0.27
YBX3-211ENST00000541351 FKBP8Q14318 412 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms