RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 SLAIN2Q9P270 581 aa21.46■■□□□ 1.03
SPIDR-227ENST00000541342 FAM208AQ9UK61 1670 aaKnown RBP21.45■■□□□ 1.02
SPIDR-227ENST00000541342 ZNF530Q6P9A1 599 aaPredicted RBP21.45■■□□□ 1.02
SPIDR-227ENST00000541342 PLEKHO1Q53GL0 409 aaPredicted RBP21.44■■□□□ 1.02
SPIDR-227ENST00000541342 AKAP4Q5JQC9 854 aa21.44■■□□□ 1.02
SPIDR-227ENST00000541342 BABAM1Q9NWV8 329 aa21.44■■□□□ 1.02
SPIDR-227ENST00000541342 KDM3BQ7LBC6 1761 aa21.43■■□□□ 1.02
SPIDR-227ENST00000541342 SLC4A2P04920 1241 aa21.43■■□□□ 1.02
SPIDR-227ENST00000541342 MCM4P33991 863 aa21.43■■□□□ 1.02
SPIDR-227ENST00000541342 AMOTQ4VCS5 1084 aa21.43■■□□□ 1.02
SPIDR-227ENST00000541342 CHRNA2Q15822 529 aa21.42■■□□□ 1.02
SPIDR-227ENST00000541342 SOS2Q07890 1332 aaPredicted RBP21.41■■□□□ 1.02
SPIDR-227ENST00000541342 PTPRCP08575 1304 aa21.41■■□□□ 1.02
SPIDR-227ENST00000541342 NUCB1Q02818 461 aa21.41■■□□□ 1.02
SPIDR-227ENST00000541342 MPRIPQ6WCQ1 1025 aa21.41■■□□□ 1.02
SPIDR-227ENST00000541342 G2E3Q7L622 706 aa21.41■■□□□ 1.02
SPIDR-227ENST00000541342 C1orf115Q9H7X2 142 aa21.41■■□□□ 1.02
SPIDR-227ENST00000541342 ABCC6O95255 1503 aa21.41■■□□□ 1.02
SPIDR-227ENST00000541342 FSD2A1L4K1 749 aa21.4■■□□□ 1.02
SPIDR-227ENST00000541342 INTS3Q68E01 1043 aaKnown RBP21.4■■□□□ 1.02
SPIDR-227ENST00000541342 CPDO75976 1380 aa21.39■■□□□ 1.02
SPIDR-227ENST00000541342 NLRP2Q9NX02 1062 aa21.39■■□□□ 1.01
SPIDR-227ENST00000541342 CHMP5Q9NZZ3 219 aa21.39■■□□□ 1.01
SPIDR-227ENST00000541342 DDIT3P35638 169 aa21.38■■□□□ 1.01
SPIDR-227ENST00000541342 ADAMTS7Q9UKP4 1686 aa21.37■■□□□ 1.01
SPIDR-227ENST00000541342 RNMTO43148 476 aaKnown RBP21.37■■□□□ 1.01
SPIDR-227ENST00000541342 XRCC6P12956 609 aaKnown RBP eCLIP21.37■■□□□ 1.01
SPIDR-227ENST00000541342 L1TD1Q5T7N2 865 aaKnown RBP21.37■■□□□ 1.01
SPIDR-227ENST00000541342 SIPA1L3O60292 1781 aaPredicted RBP21.37■■□□□ 1.01
SPIDR-227ENST00000541342 CACNA1FO60840 1977 aa21.37■■□□□ 1.01
SPIDR-227ENST00000541342 C1orf141Q5JVX7 400 aa21.37■■□□□ 1.01
SPIDR-227ENST00000541342 NECTIN2Q92692 538 aa21.37■■□□□ 1.01
SPIDR-227ENST00000541342 CHMP4BQ9H444 224 aaKnown RBP21.37■■□□□ 1.01
SPIDR-227ENST00000541342 ABCA3Q99758 1704 aa21.37■■□□□ 1.01
SPIDR-227ENST00000541342 LNPKQ9C0E8 428 aa21.37■■□□□ 1.01
SPIDR-227ENST00000541342 RRAGDQ9NQL2 400 aaPredicted RBP21.37■■□□□ 1.01
SPIDR-227ENST00000541342 MEGF6O75095 1541 aa21.36■■□□□ 1.01
SPIDR-227ENST00000541342 RBM25P49756 843 aaKnown RBP21.36■■□□□ 1.01
SPIDR-227ENST00000541342 NHSL1Q5SYE7 1610 aa21.36■■□□□ 1.01
SPIDR-227ENST00000541342 KCNQ3O43525 872 aa21.36■■□□□ 1.01
SPIDR-227ENST00000541342 SIRT2Q8IXJ6 389 aa21.36■■□□□ 1.01
SPIDR-227ENST00000541342 OVOS2A0A0G2JMS6 1433 aa21.35■■□□□ 1.01
SPIDR-227ENST00000541342 CCDC30Q5VVM6 783 aa21.35■■□□□ 1.01
SPIDR-227ENST00000541342 SOS1Q07889 1333 aaPredicted RBP21.35■■□□□ 1.01
SPIDR-227ENST00000541342 EIF4A1P60842 406 aaKnown RBP21.35■■□□□ 1.01
SPIDR-227ENST00000541342 GZF1Q9H116 711 aaPredicted RBP21.34■■□□□ 1.01
SPIDR-227ENST00000541342 TEFQ10587 303 aa21.34■■□□□ 1.01
SPIDR-227ENST00000541342 CHD1LQ86WJ1 897 aa21.34■■□□□ 1.01
SPIDR-227ENST00000541342 STK31Q9BXU1 1019 aa21.34■■□□□ 1.01
SPIDR-227ENST00000541342 F6X3S4 739 aa21.33■■□□□ 1.01
SPIDR-227ENST00000541342 CSB-PGBD3P0DP91 1061 aa21.33■■□□□ 1.01
SPIDR-227ENST00000541342 BTBD11A6QL63 1104 aa21.33■■□□□ 1
SPIDR-227ENST00000541342 RAPGEF4Q8WZA2 1011 aa21.33■■□□□ 1
SPIDR-227ENST00000541342 ARXQ96QS3 562 aa21.33■■□□□ 1
SPIDR-227ENST00000541342 PANK2Q9BZ23 570 aa21.33■■□□□ 1
SPIDR-227ENST00000541342 KIF2CQ99661 725 aa21.32■■□□□ 1
SPIDR-227ENST00000541342 TRAK2O60296 914 aa21.32■■□□□ 1
SPIDR-227ENST00000541342 PRKCSHP14314 528 aaPredicted RBP21.32■■□□□ 1
SPIDR-227ENST00000541342 HSCBQ8IWL3 235 aa21.32■■□□□ 1
SPIDR-227ENST00000541342 SCN11AQ9UI33 1791 aa21.32■■□□□ 1
SPIDR-227ENST00000541342 FLIIQ13045 1269 aa21.31■■□□□ 1
SPIDR-227ENST00000541342 GOLGA6L3A6NEY3 463 aa21.31■■□□□ 1
SPIDR-227ENST00000541342 PKD1L3Q7Z443 1732 aa21.3■■□□□ 1
SPIDR-227ENST00000541342 SNX21Q969T3 373 aa21.3■■□□□ 1
SPIDR-227ENST00000541342 TATP17735 454 aaPredicted RBP21.3■■□□□ 1
SPIDR-227ENST00000541342 HDGFL1Q5TGJ6 251 aa21.3■■□□□ 1
SPIDR-227ENST00000541342 BMP2KLQ5H9B9 411 aa21.29■■□□□ 1
SPIDR-227ENST00000541342 KDM6AO15550 1401 aaPredicted RBP21.29■■□□□ 1
SPIDR-227ENST00000541342 ATP10DQ9P241 1426 aa21.29■■□□□ 1
SPIDR-227ENST00000541342 MEIS3Q99687 375 aa21.29■■□□□ 1
SPIDR-227ENST00000541342 SLC4A10Q6U841 1118 aa21.29■■□□□ 1
SPIDR-227ENST00000541342 N4BP2Q86UW6 1770 aaPredicted RBP21.28■■□□□ 1
SPIDR-227ENST00000541342 PRDM11Q9NQV5 511 aa21.28■■□□□ 1
SPIDR-227ENST00000541342 PHKG2P15735 406 aa21.27■■□□□ 1
SPIDR-227ENST00000541342 CD2BP2O95400 341 aaKnown RBP21.27■■□□□ 1
SPIDR-227ENST00000541342 FKBP5Q13451 457 aaPredicted RBP21.27■■□□□ 1
SPIDR-227ENST00000541342 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.27■□□□□ 0.997e-7■■■■□ 21.8
SPIDR-227ENST00000541342 HOXB7P09629 217 aa21.26■□□□□ 0.99
SPIDR-227ENST00000541342 EIF2S2P20042 333 aaKnown RBP21.26■□□□□ 0.99
SPIDR-227ENST00000541342 PHAXQ9H814 394 aaKnown RBP21.26■□□□□ 0.99
SPIDR-227ENST00000541342 SPG7Q9UQ90 795 aa21.26■□□□□ 0.99
SPIDR-227ENST00000541342 COL5A2P05997 1499 aaPredicted RBP21.26■□□□□ 0.99
SPIDR-227ENST00000541342 GCC1Q96CN9 775 aa21.26■□□□□ 0.99
SPIDR-227ENST00000541342 HEG1Q9ULI3 1381 aa21.25■□□□□ 0.99
SPIDR-227ENST00000541342 CCT4P50991 539 aaKnown RBP21.25■□□□□ 0.99
SPIDR-227ENST00000541342 ANKRD45Q5TZF3 282 aa21.25■□□□□ 0.99
SPIDR-227ENST00000541342 WDR17Q8IZU2 1322 aa21.24■□□□□ 0.99
SPIDR-227ENST00000541342 PLEKHG2Q9H7P9 1386 aa21.24■□□□□ 0.99
SPIDR-227ENST00000541342 CYP27B1O15528 508 aa21.24■□□□□ 0.99
SPIDR-227ENST00000541342 TNPO1Q92973 898 aaKnown RBP21.24■□□□□ 0.99
SPIDR-227ENST00000541342 CHPF2Q9P2E5 772 aa21.24■□□□□ 0.99
SPIDR-227ENST00000541342 CEP85Q6P2H3 762 aa21.23■□□□□ 0.99
SPIDR-227ENST00000541342 ANKRD44Q8N8A2 993 aa21.23■□□□□ 0.99
SPIDR-227ENST00000541342 TBC1D9Q6ZT07 1266 aa21.22■□□□□ 0.99
SPIDR-227ENST00000541342 IFNL2Q8IZJ0 200 aa21.22■□□□□ 0.99
SPIDR-227ENST00000541342 PARP4Q9UKK3 1724 aaKnown RBP21.22■□□□□ 0.99
SPIDR-227ENST00000541342 PRAMEF22A3QJZ6 481 aa21.22■□□□□ 0.99
SPIDR-227ENST00000541342 DDX11L8A8MPP1 907 aa21.22■□□□□ 0.99
SPIDR-227ENST00000541342 SLC52A2Q9HAB3 445 aa21.22■□□□□ 0.99
SPIDR-227ENST00000541342 ROBO1Q9Y6N7 1651 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms