RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 LGR6Q9HBX8 967 aa12.27□□□□□ -0.45
DDX55-208ENST00000541259 MAP3K5Q99683 1374 aa12.27□□□□□ -0.45
DDX55-208ENST00000541259 ITGB4P16144 1822 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 A0A0G2JS52 829 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 ONECUT3O60422 494 aaPredicted RBP12.26□□□□□ -0.45
DDX55-208ENST00000541259 MYT1Q01538 1121 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 DDB1Q16531 1140 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 CCDC27Q2M243 656 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 C1orf141Q5JVX7 400 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 IFNL2Q8IZJ0 200 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 IL17REQ8NFR9 667 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 ZBED9Q6R2W3 1325 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 ZNF521Q96K83 1311 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 PCDH11XQ9BZA7 1347 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 PCDH11YQ9BZA8 1340 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 PLEKHG2Q9H7P9 1386 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 TNS2Q63HR2 1409 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 ADAMTS7Q9UKP4 1686 aa12.26□□□□□ -0.45
DDX55-208ENST00000541259 TOGARAM1Q9Y4F4 1720 aa12.25□□□□□ -0.45
DDX55-208ENST00000541259 SIPA1L3O60292 1781 aaPredicted RBP12.25□□□□□ -0.45
DDX55-208ENST00000541259 RBM6P78332 1123 aaKnown RBP12.25□□□□□ -0.45
DDX55-208ENST00000541259 SEPT12Q8IYM1 358 aa12.25□□□□□ -0.45
DDX55-208ENST00000541259 MARCH10Q8NA82 808 aaPredicted RBP12.25□□□□□ -0.45
DDX55-208ENST00000541259 KDM6AO15550 1401 aaPredicted RBP12.24□□□□□ -0.45
DDX55-208ENST00000541259 RNMTO43148 476 aaKnown RBP12.24□□□□□ -0.45
DDX55-208ENST00000541259 HTATSF1O43719 755 aaKnown RBP12.24□□□□□ -0.45
DDX55-208ENST00000541259 RXRBP28702 533 aa12.24□□□□□ -0.45
DDX55-208ENST00000541259 CHRDL2Q6WN34 429 aa12.24□□□□□ -0.45
DDX55-208ENST00000541259 NGEFQ8N5V2 710 aa12.24□□□□□ -0.45
DDX55-208ENST00000541259 RTF1Q92541 710 aaKnown RBP12.24□□□□□ -0.45
DDX55-208ENST00000541259 CDCA7LQ96GN5 454 aa12.24□□□□□ -0.45
DDX55-208ENST00000541259 LMOD3Q0VAK6 560 aa12.23□□□□□ -0.45
DDX55-208ENST00000541259 NKX1-1Q15270 411 aaPredicted RBP12.23□□□□□ -0.45
DDX55-208ENST00000541259 SBF2Q86WG5 1849 aa12.23□□□□□ -0.45
DDX55-208ENST00000541259 DOT1LQ8TEK3 1739 aa12.23□□□□□ -0.45
DDX55-208ENST00000541259 CEMIPQ8WUJ3 1361 aa12.22□□□□□ -0.45
DDX55-208ENST00000541259 FAM182BQ5T319 152 aa12.22□□□□□ -0.45
DDX55-208ENST00000541259 WDR63Q8IWG1 891 aa12.22□□□□□ -0.45
DDX55-208ENST00000541259 GOLGA2Q08379 1002 aa12.21□□□□□ -0.45
DDX55-208ENST00000541259 PDE3BQ13370 1112 aa12.21□□□□□ -0.45
DDX55-208ENST00000541259 DCAF5Q96JK2 942 aa12.21□□□□□ -0.45
DDX55-208ENST00000541259 CIZ1Q9ULV3 898 aaPredicted RBP12.21□□□□□ -0.45
DDX55-208ENST00000541259 LAS1LQ9Y4W2 734 aaKnown RBP12.21□□□□□ -0.45
DDX55-208ENST00000541259 HSP90AB1P08238 724 aaKnown RBP12.2□□□□□ -0.46
DDX55-208ENST00000541259 SLFN5Q08AF3 891 aa12.2□□□□□ -0.46
DDX55-208ENST00000541259 CHADLQ6NUI6 762 aa12.2□□□□□ -0.46
DDX55-208ENST00000541259 MIS18AQ9NYP9 233 aa12.2□□□□□ -0.46
DDX55-208ENST00000541259 RGS12O14924 1447 aa12.2□□□□□ -0.46
DDX55-208ENST00000541259 NFATC2IPQ8NCF5 419 aa12.19□□□□□ -0.46
DDX55-208ENST00000541259 KDM3BQ7LBC6 1761 aa12.19□□□□□ -0.46
DDX55-208ENST00000541259 IL16Q14005 1332 aa12.18□□□□□ -0.46
DDX55-208ENST00000541259 ZNF853P0CG23 659 aa12.18□□□□□ -0.46
DDX55-208ENST00000541259 PRKAR2AP13861 404 aaKnown RBP12.18□□□□□ -0.46
DDX55-208ENST00000541259 TEFQ10587 303 aa12.18□□□□□ -0.46
DDX55-208ENST00000541259 TAF7Q15545 349 aaPredicted RBP12.18□□□□□ -0.46
DDX55-208ENST00000541259 KRT27Q7Z3Y8 459 aa12.18□□□□□ -0.46
DDX55-208ENST00000541259 TRMT2AQ8IZ69 625 aaKnown RBP12.18□□□□□ -0.46
DDX55-208ENST00000541259 TSR2Q969E8 191 aaKnown RBP12.18□□□□□ -0.46
DDX55-208ENST00000541259 ACSBG1Q96GR2 724 aa12.18□□□□□ -0.46
DDX55-208ENST00000541259 SLC52A2Q9HAB3 445 aa12.18□□□□□ -0.46
DDX55-208ENST00000541259 MRC1P22897 1456 aa12.18□□□□□ -0.46
DDX55-208ENST00000541259 ERVV-2B6SEH9 535 aa12.17□□□□□ -0.46
DDX55-208ENST00000541259 CHL1O00533 1208 aa12.17□□□□□ -0.46
DDX55-208ENST00000541259 KCNQ3O43525 872 aa12.17□□□□□ -0.46
DDX55-208ENST00000541259 CABP4P57796 275 aa12.17□□□□□ -0.46
DDX55-208ENST00000541259 GNAI1P63096 354 aa12.17□□□□□ -0.46
DDX55-208ENST00000541259 CFAP44Q96MT7 982 aa12.17□□□□□ -0.46
DDX55-208ENST00000541259 MBIPQ9NS73 344 aa12.17□□□□□ -0.46
DDX55-208ENST00000541259 IFT57Q9NWB7 429 aa12.17□□□□□ -0.46
DDX55-208ENST00000541259 E9PSI1 815 aa12.16□□□□□ -0.46
DDX55-208ENST00000541259 KCNQ2O43526 872 aa12.16□□□□□ -0.46
DDX55-208ENST00000541259 PRIM1P49642 420 aaKnown RBP12.16□□□□□ -0.46
DDX55-208ENST00000541259 FXR2P51116 673 aaKnown RBP eCLIP12.16□□□□□ -0.46
DDX55-208ENST00000541259 CALD1Q05682 793 aaKnown RBP12.16□□□□□ -0.46
DDX55-208ENST00000541259 DUSP27Q5VZP5 1158 aa12.16□□□□□ -0.46
DDX55-208ENST00000541259 FANCIQ9NVI1 1328 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 BTBD11A6QL63 1104 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 MNX1P50219 401 aaPredicted RBP12.15□□□□□ -0.46
DDX55-208ENST00000541259 SLC39A6Q13433 755 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 GSE1Q14687 1217 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 PTF1AQ7RTS3 328 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 PIGBQ92521 554 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 SYTL4Q96C24 671 aaPredicted RBP12.15□□□□□ -0.46
DDX55-208ENST00000541259 TSPYL4Q9UJ04 414 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 BTAF1O14981 1849 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 NHSQ6T4R5 1651 aa12.15□□□□□ -0.46
DDX55-208ENST00000541259 PAPPAQ13219 1627 aa12.15□□□□□ -0.47
DDX55-208ENST00000541259 ECM2O94769 699 aaPredicted RBP12.14□□□□□ -0.47
DDX55-208ENST00000541259 MYH16Q9H6N6 1097 aa12.14□□□□□ -0.47
DDX55-208ENST00000541259 TMOD3Q9NYL9 352 aa12.14□□□□□ -0.47
DDX55-208ENST00000541259 UBR2Q8IWV8 1755 aa12.14□□□□□ -0.47
DDX55-208ENST00000541259 BCL9O00512 1426 aa12.13□□□□□ -0.47
DDX55-208ENST00000541259 EXOSC9Q06265 439 aaKnown RBP12.13□□□□□ -0.47
DDX55-208ENST00000541259 KRT24Q2M2I5 525 aa12.13□□□□□ -0.47
DDX55-208ENST00000541259 DCAF8Q5TAQ9 597 aa12.13□□□□□ -0.47
DDX55-208ENST00000541259 EP400Q96L91 3159 aa12.12□□□□□ -0.47
DDX55-208ENST00000541259 NUBP1P53384 320 aa12.12□□□□□ -0.47
DDX55-208ENST00000541259 FAM196AQ6ZSG2 479 aa12.12□□□□□ -0.47
DDX55-208ENST00000541259 C8orf58Q8NAV2 365 aa12.12□□□□□ -0.47
DDX55-208ENST00000541259 FAM212AQ96EL1 285 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms