RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 RFX1P22670 979 aa12.31□□□□□ -0.44
YBX3-210ENST00000540975 CCDC102BQ68D86 513 aa12.31□□□□□ -0.44
YBX3-210ENST00000540975 SLC35F4A4IF30 521 aa12.3□□□□□ -0.44
YBX3-210ENST00000540975 SPATA31C2B4DYI2 1134 aa12.3□□□□□ -0.44
YBX3-210ENST00000540975 RHOQP17081 205 aa12.3□□□□□ -0.44
YBX3-210ENST00000540975 SMTNP53814 917 aa12.3□□□□□ -0.44
YBX3-210ENST00000540975 NPAS3Q8IXF0 933 aa12.3□□□□□ -0.44
YBX3-210ENST00000540975 SERPINA10Q9UK55 444 aa12.3□□□□□ -0.44
YBX3-210ENST00000540975 PPFIA3O75145 1194 aa12.29□□□□□ -0.44
YBX3-210ENST00000540975 TLR1Q15399 786 aa12.29□□□□□ -0.44
YBX3-210ENST00000540975 TPCN2Q8NHX9 752 aa12.29□□□□□ -0.44
YBX3-210ENST00000540975 C1orf115Q9H7X2 142 aa12.29□□□□□ -0.44
YBX3-210ENST00000540975 ZNF358Q9NW07 568 aa12.29□□□□□ -0.44
YBX3-210ENST00000540975 SENP3-EIF4A1A0A087X0R7 540 aa12.28□□□□□ -0.44
YBX3-210ENST00000540975 BACH1O14867 736 aa12.28□□□□□ -0.44
YBX3-210ENST00000540975 DKK1O94907 266 aa12.28□□□□□ -0.44
YBX3-210ENST00000540975 VEGFBP49765 207 aa12.28□□□□□ -0.44
YBX3-210ENST00000540975 NFX1Q12986 1120 aaKnown RBP12.28□□□□□ -0.44
YBX3-210ENST00000540975 WDR44Q5JSH3 913 aa12.28□□□□□ -0.44
YBX3-210ENST00000540975 TMEM214Q6NUQ4 689 aaKnown RBP12.28□□□□□ -0.44
YBX3-210ENST00000540975 NBPF10Q6P3W6 841 aaKnown RBP12.28□□□□□ -0.44
YBX3-210ENST00000540975 LARP1Q6PKG0 1096 aaKnown RBP12.28□□□□□ -0.44
YBX3-210ENST00000540975 PPARGC1BQ86YN6 1023 aaKnown RBP12.28□□□□□ -0.44
YBX3-210ENST00000540975 NBPF15Q8N660 670 aa12.28□□□□□ -0.44
YBX3-210ENST00000540975 CCDC155Q8N6L0 562 aa12.28□□□□□ -0.44
YBX3-210ENST00000540975 CCDC97Q96F63 343 aaPredicted RBP12.28□□□□□ -0.44
YBX3-210ENST00000540975 CDCA8Q53HL2 280 aa12.27□□□□□ -0.45
YBX3-210ENST00000540975 ZNF594Q96JF6 807 aaPredicted RBP12.27□□□□□ -0.45
YBX3-210ENST00000540975 A6NJY4 79 aa12.26□□□□□ -0.45
YBX3-210ENST00000540975 GTF2E1P29083 439 aaPredicted RBP12.26□□□□□ -0.45
YBX3-210ENST00000540975 TREML4Q6UXN2 200 aa12.26□□□□□ -0.45
YBX3-210ENST00000540975 TAS1R3Q7RTX0 852 aa12.26□□□□□ -0.45
YBX3-210ENST00000540975 SIX5Q8N196 739 aa12.26□□□□□ -0.45
YBX3-210ENST00000540975 H3BM21 787 aa12.25□□□□□ -0.45
YBX3-210ENST00000540975 CDK2AP1O14519 115 aa12.25□□□□□ -0.45
YBX3-210ENST00000540975 PTK7Q13308 1070 aa12.25□□□□□ -0.45
YBX3-210ENST00000540975 MTFR1Q15390 333 aa12.25□□□□□ -0.45
YBX3-210ENST00000540975 CRTC2Q53ET0 693 aaPredicted RBP12.25□□□□□ -0.45
YBX3-210ENST00000540975 SLC16A10Q8TF71 515 aa12.25□□□□□ -0.45
YBX3-210ENST00000540975 PHKA2P46019 1235 aa12.24□□□□□ -0.45
YBX3-210ENST00000540975 SRPK2P78362 688 aaKnown RBP12.24□□□□□ -0.45
YBX3-210ENST00000540975 GNASQ5JWF2 1037 aa12.24□□□□□ -0.45
YBX3-210ENST00000540975 FAM196BA6NMK8 535 aa12.23□□□□□ -0.45
YBX3-210ENST00000540975 WFS1O76024 890 aa12.23□□□□□ -0.45
YBX3-210ENST00000540975 C4orf17Q53FE4 359 aa12.23□□□□□ -0.45
YBX3-210ENST00000540975 CCDC82Q8N4S0 544 aa12.23□□□□□ -0.45
YBX3-210ENST00000540975 RHBDD1Q8TEB9 315 aa12.23□□□□□ -0.45
YBX3-210ENST00000540975 RBM19Q9Y4C8 960 aaKnown RBP12.23□□□□□ -0.45
YBX3-210ENST00000540975 SFI1A8K8P3 1242 aa12.22□□□□□ -0.45
YBX3-210ENST00000540975 LCE2AQ5TA79 106 aaPredicted RBP12.22□□□□□ -0.45
YBX3-210ENST00000540975 TNS4Q8IZW8 715 aa12.22□□□□□ -0.45
YBX3-210ENST00000540975 TIMMDC1Q9NPL8 285 aa12.22□□□□□ -0.45
YBX3-210ENST00000540975 IQSEC3Q9UPP2 1182 aaPredicted RBP12.22□□□□□ -0.45
YBX3-210ENST00000540975 DYRK1BQ9Y463 629 aa12.22□□□□□ -0.45
YBX3-210ENST00000540975 USP17L15C9J2P7 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L10C9JJH3 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L13C9JLJ4 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L12C9JPN9 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L11C9JVI0 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L21D6R901 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L18D6R9N7 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L22D6RA61 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L17D6RBQ6 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L19D6RCP7 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L20D6RJB6 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 M0R2N6 131 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 SUPT5HO00267 1087 aaKnown RBP12.21□□□□□ -0.45
YBX3-210ENST00000540975 USP17L24Q0WX57 530 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 DPYDQ12882 1025 aa12.21□□□□□ -0.45
YBX3-210ENST00000540975 SCHIP1Q9P0W5 487 aaPredicted RBP12.21□□□□□ -0.45
YBX3-210ENST00000540975 ITGA6P23229 1130 aa12.2□□□□□ -0.46
YBX3-210ENST00000540975 EPHA4P54764 986 aa12.2□□□□□ -0.46
YBX3-210ENST00000540975 SEC13P55735 322 aa12.2□□□□□ -0.46
YBX3-210ENST00000540975 ANKMY2Q8IV38 441 aa12.2□□□□□ -0.46
YBX3-210ENST00000540975 USP3Q9Y6I4 520 aa12.2□□□□□ -0.46
YBX3-210ENST00000540975 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.19□□□□□ -0.46
YBX3-210ENST00000540975 ZNF295-AS1Q8N0V1 137 aa12.19□□□□□ -0.46
YBX3-210ENST00000540975 NIFKQ9BYG3 293 aaKnown RBP12.19□□□□□ -0.46
YBX3-210ENST00000540975 FOXK2Q01167 660 aa12.18□□□□□ -0.46
YBX3-210ENST00000540975 LCE2CQ5TA81 110 aa12.18□□□□□ -0.46
YBX3-210ENST00000540975 ARXQ96QS3 562 aa12.18□□□□□ -0.46
YBX3-210ENST00000540975 GAS2L1Q99501 681 aaPredicted RBP12.18□□□□□ -0.46
YBX3-210ENST00000540975 TSEN2Q8NCE0 465 aaKnown RBP12.17□□□□□ -0.46
YBX3-210ENST00000540975 NANOS1Q8WY41 292 aaKnown RBP12.17□□□□□ -0.46
YBX3-210ENST00000540975 IRF7Q92985 503 aa12.17□□□□□ -0.46
YBX3-210ENST00000540975 CUEDC1Q9NWM3 386 aaPredicted RBP12.17□□□□□ -0.46
YBX3-210ENST00000540975 ERBB4Q15303 1308 aa12.16□□□□□ -0.46
YBX3-210ENST00000540975 CABP1Q9NZU7 370 aa12.16□□□□□ -0.46
YBX3-210ENST00000540975 F11P03951 625 aa12.15□□□□□ -0.46
YBX3-210ENST00000540975 TBCELQ5QJ74 424 aa12.15□□□□□ -0.46
YBX3-210ENST00000540975 SLC9A9Q8IVB4 645 aa12.15□□□□□ -0.46
YBX3-210ENST00000540975 VWA5B2Q8N398 1253 aa12.15□□□□□ -0.46
YBX3-210ENST00000540975 FAM200AQ8TCP9 573 aa12.15□□□□□ -0.46
YBX3-210ENST00000540975 PBXIP1Q96AQ6 731 aa12.15□□□□□ -0.46
YBX3-210ENST00000540975 A0A1B0GTH6 734 aa12.14□□□□□ -0.47
YBX3-210ENST00000540975 VSIG8P0DPA2 414 aa12.14□□□□□ -0.47
YBX3-210ENST00000540975 PLA2G4AP47712 749 aa12.14□□□□□ -0.47
YBX3-210ENST00000540975 RIPOR1Q6ZS17 1223 aa12.14□□□□□ -0.47
YBX3-210ENST00000540975 HINFPQ9BQA5 517 aa12.14□□□□□ -0.47
YBX3-210ENST00000540975 MSX1P28360 303 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms