RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 PIM2Q9P1W9 311 aa11.51□□□□□ -0.57
CHD4-208ENST00000540960 TIAM2Q8IVF5 1701 aa11.51□□□□□ -0.57
CHD4-208ENST00000540960 KDM6AO15550 1401 aaPredicted RBP11.51□□□□□ -0.57
CHD4-208ENST00000540960 SOX10P56693 466 aa11.5□□□□□ -0.57
CHD4-208ENST00000540960 DALRD3Q5D0E6 543 aaKnown RBP11.5□□□□□ -0.57
CHD4-208ENST00000540960 PALLDQ8WX93 1383 aa11.5□□□□□ -0.57
CHD4-208ENST00000540960 LTN1O94822 1766 aa11.49□□□□□ -0.57
CHD4-208ENST00000540960 SSFA2P28290 1259 aa11.49□□□□□ -0.57
CHD4-208ENST00000540960 SRPK2P78362 688 aaKnown RBP11.49□□□□□ -0.57
CHD4-208ENST00000540960 KDM2AQ9Y2K7 1162 aa11.49□□□□□ -0.57
CHD4-208ENST00000540960 WDR33Q9C0J8 1336 aaKnown RBP11.49□□□□□ -0.57
CHD4-208ENST00000540960 TMEM88BA6NKF7 163 aa11.48□□□□□ -0.57
CHD4-208ENST00000540960 CHRNA5P30532 468 aa11.48□□□□□ -0.57
CHD4-208ENST00000540960 MAP2K1Q02750 393 aaPredicted RBP11.48□□□□□ -0.57
CHD4-208ENST00000540960 LINC00116Q8NCU8 138 aa11.48□□□□□ -0.57
CHD4-208ENST00000540960 DCAF11Q8TEB1 546 aa11.48□□□□□ -0.57
CHD4-208ENST00000540960 ZC3H4Q9UPT8 1303 aaKnown RBP11.48□□□□□ -0.57
CHD4-208ENST00000540960 C4AP0C0L4 1744 aa11.48□□□□□ -0.57
CHD4-208ENST00000540960 TTC21BQ7Z4L5 1316 aa11.47□□□□□ -0.57
CHD4-208ENST00000540960 ANP32CO43423 234 aa11.47□□□□□ -0.57
CHD4-208ENST00000540960 HSPA5P11021 654 aaKnown RBP11.47□□□□□ -0.57
CHD4-208ENST00000540960 DEFB115Q30KQ5 88 aa11.47□□□□□ -0.57
CHD4-208ENST00000540960 RGPD2P0DJD1 1756 aa11.46□□□□□ -0.57
CHD4-208ENST00000540960 NSD3Q9BZ95 1437 aa11.46□□□□□ -0.57
CHD4-208ENST00000540960 RASSF10A6NK89 507 aa11.46□□□□□ -0.57
CHD4-208ENST00000540960 DLL1O00548 723 aa11.46□□□□□ -0.57
CHD4-208ENST00000540960 ITGBL1O95965 494 aaPredicted RBP11.46□□□□□ -0.57
CHD4-208ENST00000540960 ZCRB1Q8TBF4 217 aaKnown RBP11.46□□□□□ -0.57
CHD4-208ENST00000540960 CCDC87Q9NVE4 849 aa11.46□□□□□ -0.57
CHD4-208ENST00000540960 MAP2P11137 1827 aaKnown RBP11.46□□□□□ -0.58
CHD4-208ENST00000540960 ROCK2O75116 1388 aaKnown RBP11.45□□□□□ -0.58
CHD4-208ENST00000540960 GNPATO15228 680 aa11.45□□□□□ -0.58
CHD4-208ENST00000540960 LMNB1P20700 586 aa11.45□□□□□ -0.58
CHD4-208ENST00000540960 DGKZQ13574 1117 aa11.45□□□□□ -0.58
CHD4-208ENST00000540960 MPRIPQ6WCQ1 1025 aa11.45□□□□□ -0.58
CHD4-208ENST00000540960 CARD11Q9BXL7 1154 aa11.45□□□□□ -0.58
CHD4-208ENST00000540960 LTBP1Q14766 1721 aa11.44□□□□□ -0.58
CHD4-208ENST00000540960 TMF1P82094 1093 aa11.44□□□□□ -0.58
CHD4-208ENST00000540960 HABP4Q5JVS0 413 aaKnown RBP11.44□□□□□ -0.58
CHD4-208ENST00000540960 MIER1Q8N108 512 aa11.44□□□□□ -0.58
CHD4-208ENST00000540960 LTV1Q96GA3 475 aaPredicted RBP11.44□□□□□ -0.58
CHD4-208ENST00000540960 ITGB4P16144 1822 aa11.44□□□□□ -0.58
CHD4-208ENST00000540960 CCER2I3L3R5 266 aa11.43□□□□□ -0.58
CHD4-208ENST00000540960 DDX10Q13206 875 aaKnown RBP11.43□□□□□ -0.58
CHD4-208ENST00000540960 ZNF219Q9P2Y4 722 aaPredicted RBP11.43□□□□□ -0.58
CHD4-208ENST00000540960 MEGF6O75095 1541 aa11.43□□□□□ -0.58
CHD4-208ENST00000540960 FAM208AQ9UK61 1670 aaKnown RBP11.43□□□□□ -0.58
CHD4-208ENST00000540960 ITPK1Q13572 414 aa11.42□□□□□ -0.58
CHD4-208ENST00000540960 NLGN1Q8N2Q7 840 aa11.42□□□□□ -0.58
CHD4-208ENST00000540960 THSD7BQ9C0I4 1608 aa11.42□□□□□ -0.58
CHD4-208ENST00000540960 GYS1P13807 737 aa11.41□□□□□ -0.58
CHD4-208ENST00000540960 CDCA8Q53HL2 280 aa11.41□□□□□ -0.58
CHD4-208ENST00000540960 DPY19L2Q6NUT2 758 aa11.41□□□□□ -0.58
CHD4-208ENST00000540960 PARP3Q9Y6F1 533 aa11.41□□□□□ -0.58
CHD4-208ENST00000540960 DDNO94850 711 aaPredicted RBP11.4□□□□□ -0.58
CHD4-208ENST00000540960 GRM1Q13255 1194 aa11.4□□□□□ -0.58
CHD4-208ENST00000540960 BEGAINQ9BUH8 593 aa11.4□□□□□ -0.58
CHD4-208ENST00000540960 DICER1Q9UPY3 1922 aaKnown RBP11.39□□□□□ -0.59
CHD4-208ENST00000540960 NFKBIEO00221 500 aa11.39□□□□□ -0.59
CHD4-208ENST00000540960 HMGB2P26583 209 aaKnown RBP11.39□□□□□ -0.59
CHD4-208ENST00000540960 LOC102724428A0A0B4J2F2 783 aa11.38□□□□□ -0.59
CHD4-208ENST00000540960 FXR1P51114 621 aaKnown RBP eCLIP11.38□□□□□ -0.596e-7■■■□□ 17.2
CHD4-208ENST00000540960 SIK1P57059 783 aa11.38□□□□□ -0.59
CHD4-208ENST00000540960 TRAPPC3LQ5T215 181 aa11.38□□□□□ -0.59
CHD4-208ENST00000540960 CYP4F22Q6NT55 531 aa11.38□□□□□ -0.59
CHD4-208ENST00000540960 LDHDQ86WU2 507 aa11.38□□□□□ -0.59
CHD4-208ENST00000540960 PIGBQ92521 554 aa11.38□□□□□ -0.59
CHD4-208ENST00000540960 ARHGEF1Q92888 912 aaKnown RBP11.38□□□□□ -0.59
CHD4-208ENST00000540960 CAPNS2Q96L46 248 aa11.38□□□□□ -0.59
CHD4-208ENST00000540960 GPR101Q96P66 508 aaPredicted RBP11.38□□□□□ -0.59
CHD4-208ENST00000540960 ABT1Q9ULW3 272 aaKnown RBP11.38□□□□□ -0.59
CHD4-208ENST00000540960 TTC21AQ8NDW8 1320 aa11.37□□□□□ -0.59
CHD4-208ENST00000540960 AOC2O75106 756 aa11.37□□□□□ -0.59
CHD4-208ENST00000540960 DDR1Q08345 913 aa11.37□□□□□ -0.59
CHD4-208ENST00000540960 SMARCC1Q92922 1105 aaPredicted RBP11.37□□□□□ -0.59
CHD4-208ENST00000540960 FMR1Q06787 632 aaKnown RBP eCLIP11.36□□□□□ -0.593e-8■■■□□ 16.2
CHD4-208ENST00000540960 NME9Q86XW9 330 aa11.36□□□□□ -0.59
CHD4-208ENST00000540960 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.36□□□□□ -0.59
CHD4-208ENST00000540960 GCC1Q96CN9 775 aa11.36□□□□□ -0.59
CHD4-208ENST00000540960 WASHC2AQ641Q2 1341 aa11.35□□□□□ -0.59
CHD4-208ENST00000540960 NBPF1Q3BBV0 1214 aa11.35□□□□□ -0.59
CHD4-208ENST00000540960 ERFEQ4G0M1 354 aa11.35□□□□□ -0.59
CHD4-208ENST00000540960 MAP1SQ66K74 1059 aaPredicted RBP11.35□□□□□ -0.59
CHD4-208ENST00000540960 PAXIP1Q6ZW49 1069 aaPredicted RBP11.35□□□□□ -0.59
CHD4-208ENST00000540960 TAF1DQ9H5J8 278 aaPredicted RBP11.35□□□□□ -0.59
CHD4-208ENST00000540960 KTN1Q86UP2 1357 aaKnown RBP11.35□□□□□ -0.59
CHD4-208ENST00000540960 ADAMTSL1Q8N6G6 1762 aa11.35□□□□□ -0.59
CHD4-208ENST00000540960 ATP6V1AP38606 617 aa11.34□□□□□ -0.59
CHD4-208ENST00000540960 EAPPQ56P03 285 aaPredicted RBP11.34□□□□□ -0.59
CHD4-208ENST00000540960 USHBP1Q8N6Y0 703 aa11.34□□□□□ -0.59
CHD4-208ENST00000540960 IP6K1Q92551 441 aa11.34□□□□□ -0.59
CHD4-208ENST00000540960 ZNF692Q9BU19 519 aaPredicted RBP11.34□□□□□ -0.59
CHD4-208ENST00000540960 ASAP1Q9ULH1 1129 aa11.34□□□□□ -0.59
CHD4-208ENST00000540960 RTCBQ9Y3I0 505 aaKnown RBP11.34□□□□□ -0.59
CHD4-208ENST00000540960 SCN4AP35499 1836 aa11.33□□□□□ -0.6
CHD4-208ENST00000540960 USP31Q70CQ4 1352 aa11.33□□□□□ -0.6
CHD4-208ENST00000540960 CUL9Q8IWT3 2517 aa11.33□□□□□ -0.6
CHD4-208ENST00000540960 CNTROBQ8N137 903 aa11.33□□□□□ -0.6
CHD4-208ENST00000540960 CLEC11AQ9Y240 323 aa11.33□□□□□ -0.6
CHD4-208ENST00000540960 KIF7Q2M1P5 1343 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms