RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 COL18A1P39060 1754 aa12.17□□□□□ -0.46
CLIP1-212ENST00000540304 PLEKHO1Q53GL0 409 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-212ENST00000540304 RGS12O14924 1447 aa12.17□□□□□ -0.46
CLIP1-212ENST00000540304 ZC3H6P61129 1189 aaKnown RBP12.16□□□□□ -0.46
CLIP1-212ENST00000540304 C8orf34Q49A92 452 aa12.16□□□□□ -0.46
CLIP1-212ENST00000540304 ERBB3P21860 1342 aa12.16□□□□□ -0.46
CLIP1-212ENST00000540304 SPATA31A3Q5VYP0 1347 aa12.16□□□□□ -0.46
CLIP1-212ENST00000540304 KDM3BQ7LBC6 1761 aa12.16□□□□□ -0.46
CLIP1-212ENST00000540304 AKAP4Q5JQC9 854 aa12.16□□□□□ -0.46
CLIP1-212ENST00000540304 ZNF335Q9H4Z2 1342 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-212ENST00000540304 CACNA1FO60840 1977 aa12.15□□□□□ -0.46
CLIP1-212ENST00000540304 INTS3Q68E01 1043 aaKnown RBP12.15□□□□□ -0.46
CLIP1-212ENST00000540304 ZNF530Q6P9A1 599 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-212ENST00000540304 SMC5Q8IY18 1101 aa12.15□□□□□ -0.46
CLIP1-212ENST00000540304 SLC4A2P04920 1241 aa12.15□□□□□ -0.47
CLIP1-212ENST00000540304 BRINP3Q76B58 766 aa12.15□□□□□ -0.47
CLIP1-212ENST00000540304 OVOS2A0A0G2JMS6 1433 aa12.14□□□□□ -0.47
CLIP1-212ENST00000540304 STK31Q9BXU1 1019 aa12.14□□□□□ -0.47
CLIP1-212ENST00000540304 ZBTB22O15209 634 aa12.13□□□□□ -0.47
CLIP1-212ENST00000540304 C1orf141Q5JVX7 400 aa12.13□□□□□ -0.47
CLIP1-212ENST00000540304 CCDC30Q5VVM6 783 aa12.13□□□□□ -0.47
CLIP1-212ENST00000540304 IPO9Q96P70 1041 aaKnown RBP12.13□□□□□ -0.47
CLIP1-212ENST00000540304 NAP1L2Q9ULW6 460 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-212ENST00000540304 CPDO75976 1380 aa12.12□□□□□ -0.47
CLIP1-212ENST00000540304 BRD2P25440 801 aaKnown RBP12.12□□□□□ -0.47
CLIP1-212ENST00000540304 SAMD1Q6SPF0 538 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-212ENST00000540304 CABLES1Q8TDN4 633 aa12.12□□□□□ -0.47
CLIP1-212ENST00000540304 LGR6Q9HBX8 967 aa12.12□□□□□ -0.47
CLIP1-212ENST00000540304 ADAMTS7Q9UKP4 1686 aa12.12□□□□□ -0.47
CLIP1-212ENST00000540304 C1orf115Q9H7X2 142 aa12.12□□□□□ -0.47
CLIP1-212ENST00000540304 SLAIN2Q9P270 581 aa12.12□□□□□ -0.47
CLIP1-212ENST00000540304 TEFQ10587 303 aa12.11□□□□□ -0.47
CLIP1-212ENST00000540304 HOMEZQ8IX15 550 aa12.11□□□□□ -0.47
CLIP1-212ENST00000540304 SIPA1L3O60292 1781 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-212ENST00000540304 N4BP2Q86UW6 1770 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-212ENST00000540304 PLEKHG2Q9H7P9 1386 aa12.1□□□□□ -0.47
CLIP1-212ENST00000540304 SOS2Q07890 1332 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-212ENST00000540304 RNMTO43148 476 aaKnown RBP12.1□□□□□ -0.47
CLIP1-212ENST00000540304 RTL5Q5HYW3 569 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-212ENST00000540304 MPRIPQ6WCQ1 1025 aa12.1□□□□□ -0.47
CLIP1-212ENST00000540304 G2E3Q7L622 706 aa12.1□□□□□ -0.47
CLIP1-212ENST00000540304 GCC1Q96CN9 775 aa12.1□□□□□ -0.47
CLIP1-212ENST00000540304 NLRP2Q9NX02 1062 aa12.1□□□□□ -0.47
CLIP1-212ENST00000540304 NUCB1Q02818 461 aa12.1□□□□□ -0.47
CLIP1-212ENST00000540304 RAPGEF4Q8WZA2 1011 aa12.1□□□□□ -0.47
CLIP1-212ENST00000540304 NAP1L5Q96NT1 182 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-212ENST00000540304 BRPF3Q9ULD4 1205 aa12.1□□□□□ -0.47
CLIP1-212ENST00000540304 HOXB7P09629 217 aa12.09□□□□□ -0.47
CLIP1-212ENST00000540304 EIF4A1P60842 406 aaKnown RBP12.09□□□□□ -0.47
CLIP1-212ENST00000540304 ABCA3Q99758 1704 aa12.09□□□□□ -0.47
CLIP1-212ENST00000540304 CSB-PGBD3P0DP91 1061 aa12.09□□□□□ -0.47
CLIP1-212ENST00000540304 CCT4P50991 539 aaKnown RBP12.09□□□□□ -0.47
CLIP1-212ENST00000540304 CHRNA2Q15822 529 aa12.09□□□□□ -0.47
CLIP1-212ENST00000540304 SIRT2Q8IXJ6 389 aa12.09□□□□□ -0.47
CLIP1-212ENST00000540304 NHSL1Q5SYE7 1610 aa12.09□□□□□ -0.47
CLIP1-212ENST00000540304 SCN11AQ9UI33 1791 aa12.08□□□□□ -0.48
CLIP1-212ENST00000540304 BTBD11A6QL63 1104 aa12.08□□□□□ -0.48
CLIP1-212ENST00000540304 FLIIQ13045 1269 aa12.08□□□□□ -0.48
CLIP1-212ENST00000540304 HDGFL1Q5TGJ6 251 aa12.08□□□□□ -0.48
CLIP1-212ENST00000540304 ATP10DQ9P241 1426 aa12.08□□□□□ -0.48
CLIP1-212ENST00000540304 TATP17735 454 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-212ENST00000540304 NOP58Q9Y2X3 529 aaKnown RBP12.08□□□□□ -0.48
CLIP1-212ENST00000540304 MEGF6O75095 1541 aa12.08□□□□□ -0.48
CLIP1-212ENST00000540304 PKD1L3Q7Z443 1732 aa12.07□□□□□ -0.48
CLIP1-212ENST00000540304 CHD1LQ86WJ1 897 aa12.07□□□□□ -0.48
CLIP1-212ENST00000540304 NECTIN2Q92692 538 aa12.07□□□□□ -0.48
CLIP1-212ENST00000540304 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.07□□□□□ -0.481e-6■■■■□ 24
CLIP1-212ENST00000540304 PXDNLA1KZ92 1463 aa12.07□□□□□ -0.48
CLIP1-212ENST00000540304 F6X3S4 739 aa12.07□□□□□ -0.48
CLIP1-212ENST00000540304 FKBP5Q13451 457 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-212ENST00000540304 SLC4A10Q6U841 1118 aa12.07□□□□□ -0.48
CLIP1-212ENST00000540304 SPG7Q9UQ90 795 aa12.07□□□□□ -0.48
CLIP1-212ENST00000540304 RPAP2Q8IXW5 612 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-212ENST00000540304 ANKRD44Q8N8A2 993 aa12.06□□□□□ -0.48
CLIP1-212ENST00000540304 DDRGK1Q96HY6 314 aa12.06□□□□□ -0.48
CLIP1-212ENST00000540304 MEIS3Q99687 375 aa12.06□□□□□ -0.48
CLIP1-212ENST00000540304 LNPKQ9C0E8 428 aa12.06□□□□□ -0.48
CLIP1-212ENST00000540304 ZBTB47Q9UFB7 747 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-212ENST00000540304 KCNQ3O43525 872 aa12.05□□□□□ -0.48
CLIP1-212ENST00000540304 PARP4Q9UKK3 1724 aaKnown RBP12.05□□□□□ -0.48
CLIP1-212ENST00000540304 CEP85Q6P2H3 762 aa12.05□□□□□ -0.48
CLIP1-212ENST00000540304 PHKG2P15735 406 aa12.04□□□□□ -0.48
CLIP1-212ENST00000540304 ANKRD45Q5TZF3 282 aa12.04□□□□□ -0.48
CLIP1-212ENST00000540304 PRDM11Q9NQV5 511 aa12.04□□□□□ -0.48
CLIP1-212ENST00000540304 TAOK2Q9UL54 1235 aa12.04□□□□□ -0.48
CLIP1-212ENST00000540304 KDM6AO15550 1401 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-212ENST00000540304 EIF2S2P20042 333 aaKnown RBP12.04□□□□□ -0.48
CLIP1-212ENST00000540304 BBXQ8WY36 941 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-212ENST00000540304 DCTPP1Q9H773 170 aa12.04□□□□□ -0.48
CLIP1-212ENST00000540304 HEG1Q9ULI3 1381 aa12.03□□□□□ -0.48
CLIP1-212ENST00000540304 SEC24BO95487 1268 aa12.03□□□□□ -0.48
CLIP1-212ENST00000540304 IFNL2Q8IZJ0 200 aa12.03□□□□□ -0.48
CLIP1-212ENST00000540304 MRC1P22897 1456 aa12.03□□□□□ -0.48
CLIP1-212ENST00000540304 WDR17Q8IZU2 1322 aa12.03□□□□□ -0.48
CLIP1-212ENST00000540304 COL5A2P05997 1499 aaPredicted RBP12.02□□□□□ -0.48
CLIP1-212ENST00000540304 CHPF2Q9P2E5 772 aa12.02□□□□□ -0.48
CLIP1-212ENST00000540304 GIGYF1O75420 1035 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-212ENST00000540304 GNAI3P08754 354 aa12.02□□□□□ -0.49
CLIP1-212ENST00000540304 SLC4A3P48751 1232 aa12.02□□□□□ -0.49
CLIP1-212ENST00000540304 PHAXQ9H814 394 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms