RNA–Protein interactions for RNA: ENST00000539827.5

HOMER3-204, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-204ENST00000539827 INTS3Q68E01 1043 aaKnown RBP28.39■■■□□ 2.13
HOMER3-204ENST00000539827 ROBO1Q9Y6N7 1651 aa28.38■■■□□ 2.13
HOMER3-204ENST00000539827 WDR17Q8IZU2 1322 aa28.38■■■□□ 2.13
HOMER3-204ENST00000539827 PHKG2P15735 406 aa28.38■■■□□ 2.13
HOMER3-204ENST00000539827 TOM1L2Q6ZVM7 507 aa28.38■■■□□ 2.13
HOMER3-204ENST00000539827 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.37■■■□□ 2.13
HOMER3-204ENST00000539827 HDGFL1Q5TGJ6 251 aa28.36■■■□□ 2.13
HOMER3-204ENST00000539827 BACH2Q9BYV9 841 aa28.36■■■□□ 2.13
HOMER3-204ENST00000539827 COL5A2P05997 1499 aaPredicted RBP28.36■■■□□ 2.13
HOMER3-204ENST00000539827 ADAMTS7Q9UKP4 1686 aa28.35■■■□□ 2.13
HOMER3-204ENST00000539827 IFNL2Q8IZJ0 200 aa28.35■■■□□ 2.13
HOMER3-204ENST00000539827 F6X3S4 739 aa28.34■■■□□ 2.13
HOMER3-204ENST00000539827 EIF2S2P20042 333 aaKnown RBP28.34■■■□□ 2.13
HOMER3-204ENST00000539827 STRN4Q9NRL3 753 aa28.34■■■□□ 2.13
HOMER3-204ENST00000539827 KDM6AO15550 1401 aaPredicted RBP28.33■■■□□ 2.13
HOMER3-204ENST00000539827 SIPA1L3O60292 1781 aaPredicted RBP28.33■■■□□ 2.13
HOMER3-204ENST00000539827 FLIIQ13045 1269 aa28.33■■■□□ 2.13
HOMER3-204ENST00000539827 CYP27B1O15528 508 aa28.32■■■□□ 2.12
HOMER3-204ENST00000539827 EVA1CP58658 441 aa28.31■■■□□ 2.12
HOMER3-204ENST00000539827 SLC4A10Q6U841 1118 aa28.31■■■□□ 2.12
HOMER3-204ENST00000539827 SCN11AQ9UI33 1791 aa28.31■■■□□ 2.12
HOMER3-204ENST00000539827 PKD1L3Q7Z443 1732 aa28.31■■■□□ 2.12
HOMER3-204ENST00000539827 HOXB7P09629 217 aa28.3■■■□□ 2.12
HOMER3-204ENST00000539827 FKBP5Q13451 457 aaPredicted RBP28.3■■■□□ 2.12
HOMER3-204ENST00000539827 LARP1Q6PKG0 1096 aaKnown RBP28.3■■■□□ 2.12
HOMER3-204ENST00000539827 SLC52A2Q9HAB3 445 aa28.29■■■□□ 2.12
HOMER3-204ENST00000539827 PLEKHG2Q9H7P9 1386 aa28.28■■■□□ 2.12
HOMER3-204ENST00000539827 AHDC1Q5TGY3 1603 aaPredicted RBP28.28■■■□□ 2.12
HOMER3-204ENST00000539827 SMC5Q8IY18 1101 aa28.28■■■□□ 2.12
HOMER3-204ENST00000539827 CACNA1FO60840 1977 aa28.28■■■□□ 2.12
HOMER3-204ENST00000539827 CARD10Q9BWT7 1032 aa28.28■■■□□ 2.12
HOMER3-204ENST00000539827 PHAXQ9H814 394 aaKnown RBP28.27■■■□□ 2.12
HOMER3-204ENST00000539827 SIRT2Q8IXJ6 389 aa28.26■■■□□ 2.11
HOMER3-204ENST00000539827 NFATC2IPQ8NCF5 419 aa28.26■■■□□ 2.11
HOMER3-204ENST00000539827 CCT4P50991 539 aaKnown RBP28.26■■■□□ 2.11
HOMER3-204ENST00000539827 SLC39A6Q13433 755 aa28.26■■■□□ 2.11
HOMER3-204ENST00000539827 DCAF5Q96JK2 942 aa28.26■■■□□ 2.11
HOMER3-204ENST00000539827 CHPF2Q9P2E5 772 aa28.26■■■□□ 2.11
HOMER3-204ENST00000539827 PARP4Q9UKK3 1724 aaKnown RBP28.25■■■□□ 2.11
HOMER3-204ENST00000539827 FAM161AQ3B820 660 aa28.25■■■□□ 2.11
HOMER3-204ENST00000539827 MEIS3Q99687 375 aa28.25■■■□□ 2.11
HOMER3-204ENST00000539827 GIGYF1O75420 1035 aaPredicted RBP28.24■■■□□ 2.11
HOMER3-204ENST00000539827 ZCRB1Q8TBF4 217 aaKnown RBP28.24■■■□□ 2.11
HOMER3-204ENST00000539827 PRAMEF22A3QJZ6 481 aa28.24■■■□□ 2.11
HOMER3-204ENST00000539827 HEG1Q9ULI3 1381 aa28.23■■■□□ 2.11
HOMER3-204ENST00000539827 HSP90AB1P08238 724 aaKnown RBP28.23■■■□□ 2.11
HOMER3-204ENST00000539827 IL2RBP14784 551 aa28.22■■■□□ 2.11
HOMER3-204ENST00000539827 C8orf34Q49A92 452 aa28.22■■■□□ 2.11
HOMER3-204ENST00000539827 BTG4Q9NY30 223 aa28.22■■■□□ 2.11
HOMER3-204ENST00000539827 ANXA1P04083 346 aa28.22■■■□□ 2.11
HOMER3-204ENST00000539827 CHMP4AQ9BY43 222 aa28.22■■■□□ 2.11
HOMER3-204ENST00000539827 ZNF790Q6PG37 636 aa28.21■■■□□ 2.11
HOMER3-204ENST00000539827 MYT1Q01538 1121 aa28.2■■■□□ 2.1
HOMER3-204ENST00000539827 USP35Q9P2H5 1018 aa28.2■■■□□ 2.1
HOMER3-204ENST00000539827 PCDH11XQ9BZA7 1347 aa28.19■■■□□ 2.1
HOMER3-204ENST00000539827 PCDH11YQ9BZA8 1340 aa28.19■■■□□ 2.1
HOMER3-204ENST00000539827 CABP4P57796 275 aa28.19■■■□□ 2.1
HOMER3-204ENST00000539827 NUCB1Q02818 461 aa28.18■■■□□ 2.1
HOMER3-204ENST00000539827 COL22A1Q8NFW1 1626 aaPredicted RBP28.18■■■□□ 2.1
HOMER3-204ENST00000539827 MRC1P22897 1456 aa28.18■■■□□ 2.1
HOMER3-204ENST00000539827 GCC1Q96CN9 775 aa28.17■■■□□ 2.1
HOMER3-204ENST00000539827 PIP4K2BP78356 416 aa28.17■■■□□ 2.1
HOMER3-204ENST00000539827 NPM2Q86SE8 214 aaKnown RBP28.17■■■□□ 2.1
HOMER3-204ENST00000539827 ANKRD44Q8N8A2 993 aa28.17■■■□□ 2.1
HOMER3-204ENST00000539827 ATP10DQ9P241 1426 aa28.16■■■□□ 2.1
HOMER3-204ENST00000539827 PHLPP1O60346 1717 aa28.16■■■□□ 2.1
HOMER3-204ENST00000539827 CEP85Q6P2H3 762 aa28.16■■■□□ 2.1
HOMER3-204ENST00000539827 DBF4Q9UBU7 674 aaPredicted RBP28.16■■■□□ 2.1
HOMER3-204ENST00000539827 COL14A1Q05707 1796 aaKnown RBP28.16■■■□□ 2.1
HOMER3-204ENST00000539827 DDX54Q8TDD1 881 aaKnown RBP28.15■■■□□ 2.1
HOMER3-204ENST00000539827 PROSER3Q2NL68 480 aa28.15■■■□□ 2.1
HOMER3-204ENST00000539827 ANKRD45Q5TZF3 282 aa28.15■■■□□ 2.1
HOMER3-204ENST00000539827 LNPKQ9C0E8 428 aa28.15■■■□□ 2.1
HOMER3-204ENST00000539827 CHD1LQ86WJ1 897 aa28.14■■■□□ 2.1
HOMER3-204ENST00000539827 RPAP2Q8IXW5 612 aaPredicted RBP28.14■■■□□ 2.1
HOMER3-204ENST00000539827 COL16A1Q07092 1604 aaPredicted RBP28.14■■■□□ 2.09
HOMER3-204ENST00000539827 ZNF496Q96IT1 587 aaPredicted RBP28.13■■■□□ 2.09
HOMER3-204ENST00000539827 TTC5Q8N0Z6 440 aa28.13■■■□□ 2.09
HOMER3-204ENST00000539827 PXDNLA1KZ92 1463 aa28.13■■■□□ 2.09
HOMER3-204ENST00000539827 TOM1O60784 492 aa28.11■■■□□ 2.09
HOMER3-204ENST00000539827 C5P01031 1676 aa28.11■■■□□ 2.09
HOMER3-204ENST00000539827 SHANK3Q9BYB0 1731 aa28.11■■■□□ 2.09
HOMER3-204ENST00000539827 PI4KAP2A4QPH2 592 aa28.11■■■□□ 2.09
HOMER3-204ENST00000539827 ANP32AP39687 249 aaKnown RBP28.11■■■□□ 2.09
HOMER3-204ENST00000539827 PI4KAP1Q8N8J0 262 aa28.11■■■□□ 2.09
HOMER3-204ENST00000539827 N4BP2Q86UW6 1770 aaPredicted RBP28.1■■■□□ 2.09
HOMER3-204ENST00000539827 GNAI2P04899 355 aa28.1■■■□□ 2.09
HOMER3-204ENST00000539827 DNAAF4Q8WXU2 420 aa28.1■■■□□ 2.09
HOMER3-204ENST00000539827 DCTPP1Q9H773 170 aa28.1■■■□□ 2.09
HOMER3-204ENST00000539827 NKX1-1Q15270 411 aaPredicted RBP28.09■■■□□ 2.09
HOMER3-204ENST00000539827 ADAMTS2O95450 1211 aa28.08■■■□□ 2.09
HOMER3-204ENST00000539827 GNAI3P08754 354 aa28.08■■■□□ 2.09
HOMER3-204ENST00000539827 FMNL2Q96PY5 1086 aa28.08■■■□□ 2.09
HOMER3-204ENST00000539827 SRCIN1Q9C0H9 1055 aa28.08■■■□□ 2.09
HOMER3-204ENST00000539827 ADCY9O60503 1353 aa28.08■■■□□ 2.08
HOMER3-204ENST00000539827 MSH5O43196 834 aa28.07■■■□□ 2.08
HOMER3-204ENST00000539827 PDIA6Q15084 440 aa28.07■■■□□ 2.08
HOMER3-204ENST00000539827 DDX21Q9NR30 783 aaKnown RBP eCLIP28.07■■■□□ 2.08
HOMER3-204ENST00000539827 HYPKQ9NX55 129 aa28.07■■■□□ 2.08
HOMER3-204ENST00000539827 ERVV-2B6SEH9 535 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms