RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 NUDCQ9Y266 331 aa14.34□□□□□ -0.11
HMGA2-209ENST00000539662 MYBBP1AQ9BQG0 1328 aaKnown RBP14.34□□□□□ -0.11
HMGA2-209ENST00000539662 LRP5O75197 1615 aa14.33□□□□□ -0.11
HMGA2-209ENST00000539662 LINC00116Q8NCU8 138 aa14.33□□□□□ -0.12
HMGA2-209ENST00000539662 IL17REQ8NFR9 667 aa14.33□□□□□ -0.12
HMGA2-209ENST00000539662 LOC102724428A0A0B4J2F2 783 aa14.32□□□□□ -0.12
HMGA2-209ENST00000539662 FCHSD2O94868 740 aa14.32□□□□□ -0.12
HMGA2-209ENST00000539662 ZBTB7AO95365 584 aa14.32□□□□□ -0.12
HMGA2-209ENST00000539662 SIK1P57059 783 aa14.32□□□□□ -0.12
HMGA2-209ENST00000539662 CCDC184Q52MB2 194 aa14.32□□□□□ -0.12
HMGA2-209ENST00000539662 SMARCC1Q92922 1105 aaPredicted RBP14.32□□□□□ -0.12
HMGA2-209ENST00000539662 SLC52A2Q9HAB3 445 aa14.32□□□□□ -0.12
HMGA2-209ENST00000539662 PNPLA7Q6ZV29 1317 aa14.32□□□□□ -0.12
HMGA2-209ENST00000539662 C4BP0C0L5 1744 aa14.32□□□□□ -0.12
HMGA2-209ENST00000539662 MRC1P22897 1456 aa14.31□□□□□ -0.12
HMGA2-209ENST00000539662 DLG5Q8TDM6 1919 aa14.31□□□□□ -0.12
HMGA2-209ENST00000539662 SLC39A6Q13433 755 aa14.31□□□□□ -0.12
HMGA2-209ENST00000539662 PLEKHF1Q96S99 279 aa14.31□□□□□ -0.12
HMGA2-209ENST00000539662 QSER1Q2KHR3 1735 aa14.31□□□□□ -0.12
HMGA2-209ENST00000539662 SIPA1L3O60292 1781 aaPredicted RBP14.31□□□□□ -0.12
HMGA2-209ENST00000539662 MAP3K5Q99683 1374 aa14.31□□□□□ -0.12
HMGA2-209ENST00000539662 DCTN1Q14203 1278 aa14.3□□□□□ -0.12
HMGA2-209ENST00000539662 GAS2L2Q8NHY3 880 aa14.3□□□□□ -0.12
HMGA2-209ENST00000539662 RBM42Q9BTD8 480 aaKnown RBP14.3□□□□□ -0.12
HMGA2-209ENST00000539662 ATF5Q9Y2D1 282 aaPredicted RBP14.3□□□□□ -0.12
HMGA2-209ENST00000539662 TJP1Q07157 1748 aa14.29□□□□□ -0.12
HMGA2-209ENST00000539662 GNAT3A8MTJ3 354 aa14.29□□□□□ -0.12
HMGA2-209ENST00000539662 PTCD1O75127 700 aaKnown RBP14.29□□□□□ -0.12
HMGA2-209ENST00000539662 ATP6V1AP38606 617 aa14.29□□□□□ -0.12
HMGA2-209ENST00000539662 TFCP2L1Q9NZI6 479 aa14.29□□□□□ -0.12
HMGA2-209ENST00000539662 COL5A3P25940 1745 aaPredicted RBP14.29□□□□□ -0.12
HMGA2-209ENST00000539662 UBR3Q6ZT12 1888 aa14.29□□□□□ -0.12
HMGA2-209ENST00000539662 KCPQ6ZWJ8 1503 aa14.28□□□□□ -0.12
HMGA2-209ENST00000539662 MCM10Q7L590 875 aa14.28□□□□□ -0.12
HMGA2-209ENST00000539662 COL23A1Q86Y22 540 aaPredicted RBP14.28□□□□□ -0.12
HMGA2-209ENST00000539662 MYH14Q7Z406 1995 aaKnown RBP14.27□□□□□ -0.12
HMGA2-209ENST00000539662 PTGER2P43116 358 aa14.27□□□□□ -0.13
HMGA2-209ENST00000539662 UBR2Q8IWV8 1755 aa14.27□□□□□ -0.13
HMGA2-209ENST00000539662 ZNF831Q5JPB2 1677 aa14.26□□□□□ -0.13
HMGA2-209ENST00000539662 CEMIPQ8WUJ3 1361 aa14.26□□□□□ -0.13
HMGA2-209ENST00000539662 KCNQ3O43525 872 aa14.26□□□□□ -0.13
HMGA2-209ENST00000539662 CCDC146Q8IYE0 955 aa14.26□□□□□ -0.13
HMGA2-209ENST00000539662 SGIP1Q9BQI5 828 aa14.25□□□□□ -0.13
HMGA2-209ENST00000539662 THUMPD2Q9BTF0 503 aaKnown RBP14.25□□□□□ -0.13
HMGA2-209ENST00000539662 SPON1Q9HCB6 807 aa14.25□□□□□ -0.13
HMGA2-209ENST00000539662 ADAMTS8Q9UP79 889 aa14.25□□□□□ -0.13
HMGA2-209ENST00000539662 PHF14O94880 888 aa14.24□□□□□ -0.13
HMGA2-209ENST00000539662 DNAJC10Q8IXB1 793 aa14.24□□□□□ -0.13
HMGA2-209ENST00000539662 COL24A1Q17RW2 1714 aa14.24□□□□□ -0.13
HMGA2-209ENST00000539662 MSH5O43196 834 aa14.23□□□□□ -0.13
HMGA2-209ENST00000539662 MSL1Q68DK7 614 aa14.23□□□□□ -0.13
HMGA2-209ENST00000539662 AK7Q96M32 723 aa14.23□□□□□ -0.13
HMGA2-209ENST00000539662 MTFR1LQ9H019 292 aa14.23□□□□□ -0.13
HMGA2-209ENST00000539662 RRP7AQ9Y3A4 280 aaKnown RBP14.23□□□□□ -0.13
HMGA2-209ENST00000539662 CICQ96RK0 1608 aaPredicted RBP14.23□□□□□ -0.13
HMGA2-209ENST00000539662 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.22□□□□□ -0.13
HMGA2-209ENST00000539662 GNPATO15228 680 aa14.22□□□□□ -0.13
HMGA2-209ENST00000539662 TEFQ10587 303 aa14.22□□□□□ -0.13
HMGA2-209ENST00000539662 NFE2L2Q16236 605 aa14.22□□□□□ -0.13
HMGA2-209ENST00000539662 ZNF496Q96IT1 587 aaPredicted RBP14.22□□□□□ -0.13
HMGA2-209ENST00000539662 MIS18AQ9NYP9 233 aa14.22□□□□□ -0.13
HMGA2-209ENST00000539662 SENP3-EIF4A1A0A087X0R7 540 aa14.21□□□□□ -0.13
HMGA2-209ENST00000539662 ZNF790Q6PG37 636 aa14.21□□□□□ -0.13
HMGA2-209ENST00000539662 PRAMEF22A3QJZ6 481 aa14.2□□□□□ -0.14
HMGA2-209ENST00000539662 BTBD11A6QL63 1104 aa14.2□□□□□ -0.14
HMGA2-209ENST00000539662 CRKLP46109 303 aaKnown RBP14.2□□□□□ -0.14
HMGA2-209ENST00000539662 INTS5Q6P9B9 1019 aaKnown RBP14.2□□□□□ -0.14
HMGA2-209ENST00000539662 RTF1Q92541 710 aaKnown RBP14.2□□□□□ -0.14
HMGA2-209ENST00000539662 C4AP0C0L4 1744 aa14.2□□□□□ -0.14
HMGA2-209ENST00000539662 CNTNAP4Q9C0A0 1308 aa14.19□□□□□ -0.14
HMGA2-209ENST00000539662 MAPK8IP3Q9UPT6 1336 aa14.19□□□□□ -0.14
HMGA2-209ENST00000539662 TMPOP42166 694 aaKnown RBP14.19□□□□□ -0.14
HMGA2-209ENST00000539662 WDR43Q15061 677 aaKnown RBP eCLIP14.19□□□□□ -0.14
HMGA2-209ENST00000539662 NEUROD2Q15784 382 aa14.19□□□□□ -0.14
HMGA2-209ENST00000539662 HTATSF1O43719 755 aaKnown RBP14.18□□□□□ -0.14
HMGA2-209ENST00000539662 CYP19A1P11511 503 aaPredicted RBP14.18□□□□□ -0.14
HMGA2-209ENST00000539662 RIPK4P57078 832 aa14.18□□□□□ -0.14
HMGA2-209ENST00000539662 RC3H1Q5TC82 1133 aaKnown RBP14.18□□□□□ -0.14
HMGA2-209ENST00000539662 SLC16A10Q8TF71 515 aa14.18□□□□□ -0.14
HMGA2-209ENST00000539662 KDM3BQ7LBC6 1761 aa14.17□□□□□ -0.14
HMGA2-209ENST00000539662 ANP32CO43423 234 aa14.17□□□□□ -0.14
HMGA2-209ENST00000539662 RPS6KA4O75676 772 aa14.17□□□□□ -0.14
HMGA2-209ENST00000539662 SSFA2P28290 1259 aa14.17□□□□□ -0.14
HMGA2-209ENST00000539662 TTC5Q8N0Z6 440 aa14.17□□□□□ -0.14
HMGA2-209ENST00000539662 ARHGEF1Q92888 912 aaKnown RBP14.17□□□□□ -0.14
HMGA2-209ENST00000539662 RUNDC1Q96C34 613 aa14.17□□□□□ -0.14
HMGA2-209ENST00000539662 PPP1R1BQ9UD71 204 aaPredicted RBP14.17□□□□□ -0.14
HMGA2-209ENST00000539662 ZBTB1Q9Y2K1 713 aa14.17□□□□□ -0.14
HMGA2-209ENST00000539662 HEG1Q9ULI3 1381 aa14.17□□□□□ -0.14
HMGA2-209ENST00000539662 NEFMP07197 916 aa14.16□□□□□ -0.14
HMGA2-209ENST00000539662 PNNQ9H307 717 aaKnown RBP14.16□□□□□ -0.14
HMGA2-209ENST00000539662 TRIM35Q9UPQ4 493 aa14.16□□□□□ -0.14
HMGA2-209ENST00000539662 RTCBQ9Y3I0 505 aaKnown RBP14.16□□□□□ -0.14
HMGA2-209ENST00000539662 PIP4K2AP48426 406 aaPredicted RBP14.15□□□□□ -0.14
HMGA2-209ENST00000539662 TAF7Q15545 349 aaPredicted RBP14.15□□□□□ -0.14
HMGA2-209ENST00000539662 TRAPPC3LQ5T215 181 aa14.15□□□□□ -0.14
HMGA2-209ENST00000539662 VSIG10Q8N0Z9 540 aa14.15□□□□□ -0.14
HMGA2-209ENST00000539662 FLAD1Q8NFF5 587 aa14.15□□□□□ -0.14
HMGA2-209ENST00000539662 PNISRQ8TF01 805 aaKnown RBP14.15□□□□□ -0.14
HMGA2-209ENST00000539662 ARXQ96QS3 562 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms