RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 MCM3P25205 808 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 MNAT1P51948 309 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 RBM5P52756 815 aaKnown RBP eCLIP11.59□□□□□ -0.55
COL4A6-208ENST00000538570 PRAM1Q96QH2 718 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 DYNC1I1O14576 645 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 PPP1R12BO60237 982 aaPredicted RBP11.59□□□□□ -0.55
COL4A6-208ENST00000538570 FAM107BQ9H098 131 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 STRN4Q9NRL3 753 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 NESP48681 1621 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 SFPQP23246 707 aaKnown RBP eCLIP11.59□□□□□ -0.55
COL4A6-208ENST00000538570 ZNF530Q6P9A1 599 aaPredicted RBP11.59□□□□□ -0.55
COL4A6-208ENST00000538570 SUDS3Q9H7L9 328 aaPredicted RBP11.59□□□□□ -0.55
COL4A6-208ENST00000538570 CEP126Q9P2H0 1117 aa11.59□□□□□ -0.55
COL4A6-208ENST00000538570 KIF5CO60282 957 aa11.58□□□□□ -0.56
COL4A6-208ENST00000538570 CAMK4Q16566 473 aa11.58□□□□□ -0.56
COL4A6-208ENST00000538570 DNAAF4Q8WXU2 420 aa11.58□□□□□ -0.56
COL4A6-208ENST00000538570 CPSF2Q9P2I0 782 aaKnown RBP11.58□□□□□ -0.56
COL4A6-208ENST00000538570 HMGXB3Q12766 1538 aa11.58□□□□□ -0.56
COL4A6-208ENST00000538570 ARHGAP5Q13017 1502 aa11.58□□□□□ -0.56
COL4A6-208ENST00000538570 PRXQ9BXM0 1461 aa11.58□□□□□ -0.56
COL4A6-208ENST00000538570 ZNF692Q9BU19 519 aaPredicted RBP11.58□□□□□ -0.56
COL4A6-208ENST00000538570 RAI14Q9P0K7 980 aa11.58□□□□□ -0.56
COL4A6-208ENST00000538570 RPAP2Q8IXW5 612 aaPredicted RBP11.58□□□□□ -0.56
COL4A6-208ENST00000538570 ANO10Q9NW15 660 aa11.58□□□□□ -0.56
COL4A6-208ENST00000538570 EFCAB5A4FU69 1503 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 TRIM21P19474 475 aaKnown RBP11.57□□□□□ -0.56
COL4A6-208ENST00000538570 SETSIPP0DME0 302 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 FKBP15Q5T1M5 1219 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 KIF18AQ8NI77 898 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 ZNF428Q96B54 188 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 TOPBP1Q92547 1522 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 GOLGA6L10A0A0M3HER8 536 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 IL1RAPL2Q9NP60 686 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 CCDC183Q5T5S1 534 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 CDK19Q9BWU1 502 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 CCDC113Q9H0I3 377 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 TSG101Q99816 390 aa11.57□□□□□ -0.56
COL4A6-208ENST00000538570 PIBF1Q8WXW3 757 aa11.56□□□□□ -0.56
COL4A6-208ENST00000538570 LRP2BPQ9P2M1 347 aa11.56□□□□□ -0.56
COL4A6-208ENST00000538570 ZSCAN29Q8IWY8 852 aaPredicted RBP11.56□□□□□ -0.56
COL4A6-208ENST00000538570 USP5P45974 858 aa11.56□□□□□ -0.56
COL4A6-208ENST00000538570 NBPF1Q3BBV0 1214 aa11.56□□□□□ -0.56
COL4A6-208ENST00000538570 GTPBP4Q9BZE4 634 aaKnown RBP11.56□□□□□ -0.56
COL4A6-208ENST00000538570 MRVI1Q9Y6F6 885 aa11.56□□□□□ -0.56
COL4A6-208ENST00000538570 AIDAQ96BJ3 306 aa11.56□□□□□ -0.56
COL4A6-208ENST00000538570 BTBD11A6QL63 1104 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 POLA1P09884 1462 aaPredicted RBP11.55□□□□□ -0.56
COL4A6-208ENST00000538570 CCDC83Q8IWF9 413 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 BANK1Q8NDB2 785 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 TOP1P11387 765 aaKnown RBP11.55□□□□□ -0.56
COL4A6-208ENST00000538570 KIF4BQ2VIQ3 1234 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 TOM1L2Q6ZVM7 507 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 DDX54Q8TDD1 881 aaKnown RBP11.55□□□□□ -0.56
COL4A6-208ENST00000538570 DNAI2Q9GZS0 605 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 SLC12A5Q9H2X9 1139 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 URI1O94763 535 aaPredicted RBP11.55□□□□□ -0.56
COL4A6-208ENST00000538570 RNF187Q5TA31 235 aaPredicted RBP11.55□□□□□ -0.56
COL4A6-208ENST00000538570 CACNA2D4Q7Z3S7 1137 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 U3KPZ7 1027 aaPredicted RBP11.55□□□□□ -0.56
COL4A6-208ENST00000538570 IDH1O75874 414 aaKnown RBP11.55□□□□□ -0.56
COL4A6-208ENST00000538570 ANAPC15P60006 121 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 IFFO1Q0D2I5 559 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 LUZP1Q86V48 1076 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 VPS36Q86VN1 386 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 HFM1A2PYH4 1435 aa11.55□□□□□ -0.56
COL4A6-208ENST00000538570 STAMBPO95630 424 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 ARID4AP29374 1257 aaPredicted RBP11.54□□□□□ -0.56
COL4A6-208ENST00000538570 TXNDC2Q86VQ3 553 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 CCDC97Q96F63 343 aaPredicted RBP11.54□□□□□ -0.56
COL4A6-208ENST00000538570 GCOM1H8Y6P7 765 aaPredicted RBP11.54□□□□□ -0.56
COL4A6-208ENST00000538570 MYZAPP0CAP1 466 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 CCDC178Q5BJE1 867 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 MICALCLQ6ZW33 695 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 NUTM1Q86Y26 1132 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 SCAND2PQ9GZW5 306 aaPredicted RBP11.54□□□□□ -0.56
COL4A6-208ENST00000538570 SEC63Q9UGP8 760 aaKnown RBP11.54□□□□□ -0.56
COL4A6-208ENST00000538570 ANKRD30BQ9BXX2 1392 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 GOLIM4O00461 696 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 PSMD1Q99460 953 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 CABP1Q9NZU7 370 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 TOP2BQ02880 1626 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 TNIP1Q15025 636 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 PLEKHH1Q9ULM0 1364 aa11.54□□□□□ -0.56
COL4A6-208ENST00000538570 FGFR1OPO95684 399 aaKnown RBP11.54□□□□□ -0.56
COL4A6-208ENST00000538570 IGHMBP2P38935 993 aaKnown RBP11.54□□□□□ -0.56
COL4A6-208ENST00000538570 PHAXQ9H814 394 aaKnown RBP11.54□□□□□ -0.56
COL4A6-208ENST00000538570 RAB11FIP3O75154 756 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 PROSER2Q86WR7 435 aaPredicted RBP11.53□□□□□ -0.56
COL4A6-208ENST00000538570 ZFP91Q96JP5 570 aaPredicted RBP11.53□□□□□ -0.56
COL4A6-208ENST00000538570 ZNF287Q9HBT7 754 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 GOPCQ9HD26 462 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 CLIP2Q9UDT6 1046 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 SPINK5Q9NQ38 1064 aaPredicted RBP11.53□□□□□ -0.56
COL4A6-208ENST00000538570 FERMT3Q86UX7 667 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 KIF1BPQ96EK5 621 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 TROQ12816 1431 aaPredicted RBP11.53□□□□□ -0.56
COL4A6-208ENST00000538570 PLEKHH2Q8IVE3 1493 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 SMC1AQ14683 1233 aaKnown RBP11.53□□□□□ -0.56
COL4A6-208ENST00000538570 KLHL10Q6JEL2 608 aa11.53□□□□□ -0.56
COL4A6-208ENST00000538570 ERBINQ96RT1 1412 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms