RNA–Protein interactions for RNA: ENST00000538545.6

ACTN1-205, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 2,813 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-205ENST00000538545 COL18A1P39060 1754 aa17.82■□□□□ 0.44
ACTN1-205ENST00000538545 APBB1O00213 710 aa17.82■□□□□ 0.44
ACTN1-205ENST00000538545 SOS2Q07890 1332 aaPredicted RBP17.81■□□□□ 0.44
ACTN1-205ENST00000538545 AMOTQ4VCS5 1084 aa17.81■□□□□ 0.44
ACTN1-205ENST00000538545 INTS3Q68E01 1043 aaKnown RBP17.81■□□□□ 0.44
ACTN1-205ENST00000538545 CCDC30Q5VVM6 783 aa17.8■□□□□ 0.44
ACTN1-205ENST00000538545 SMC5Q8IY18 1101 aa17.8■□□□□ 0.44
ACTN1-205ENST00000538545 CHPF2Q9P2E5 772 aa17.8■□□□□ 0.44
ACTN1-205ENST00000538545 ANKRD45Q5TZF3 282 aa17.8■□□□□ 0.44
ACTN1-205ENST00000538545 NCAPD2Q15021 1401 aa17.8■□□□□ 0.44
ACTN1-205ENST00000538545 NFATC2IPQ8NCF5 419 aa17.79■□□□□ 0.44
ACTN1-205ENST00000538545 CYP27B1O15528 508 aa17.79■□□□□ 0.44
ACTN1-205ENST00000538545 TATP17735 454 aaPredicted RBP17.79■□□□□ 0.44
ACTN1-205ENST00000538545 CRYBG1Q9Y4K1 1723 aa17.78■□□□□ 0.44
ACTN1-205ENST00000538545 TOM1L2Q6ZVM7 507 aa17.78■□□□□ 0.44
ACTN1-205ENST00000538545 PTPRCP08575 1304 aa17.78■□□□□ 0.44
ACTN1-205ENST00000538545 PROSER3Q2NL68 480 aa17.78■□□□□ 0.44
ACTN1-205ENST00000538545 LMO7Q8WWI1 1683 aa17.78■□□□□ 0.44
ACTN1-205ENST00000538545 CAMTA1Q9Y6Y1 1673 aa17.78■□□□□ 0.44
ACTN1-205ENST00000538545 PIP4K2AP48426 406 aaPredicted RBP17.77■□□□□ 0.44
ACTN1-205ENST00000538545 SLC4A3P48751 1232 aa17.77■□□□□ 0.44
ACTN1-205ENST00000538545 FAM208AQ9UK61 1670 aaKnown RBP17.76■□□□□ 0.43
ACTN1-205ENST00000538545 PHKG2P15735 406 aa17.76■□□□□ 0.43
ACTN1-205ENST00000538545 KDM6AO15550 1401 aaPredicted RBP17.76■□□□□ 0.43
ACTN1-205ENST00000538545 LARP1Q6PKG0 1096 aaKnown RBP17.76■□□□□ 0.43
ACTN1-205ENST00000538545 IPO9Q96P70 1041 aaKnown RBP17.76■□□□□ 0.43
ACTN1-205ENST00000538545 NUCB1Q02818 461 aa17.75■□□□□ 0.43
ACTN1-205ENST00000538545 CHD1LQ86WJ1 897 aa17.74■□□□□ 0.43
ACTN1-205ENST00000538545 C16orf71Q8IYS4 520 aaPredicted RBP17.74■□□□□ 0.43
ACTN1-205ENST00000538545 SMARCA5O60264 1052 aaPredicted RBP17.74■□□□□ 0.43
ACTN1-205ENST00000538545 CEP85Q6P2H3 762 aa17.74■□□□□ 0.43
ACTN1-205ENST00000538545 ATP10DQ9P241 1426 aa17.73■□□□□ 0.43
ACTN1-205ENST00000538545 KDM3BQ7LBC6 1761 aa17.73■□□□□ 0.43
ACTN1-205ENST00000538545 KAT6BQ8WYB5 2073 aa17.73■□□□□ 0.43
ACTN1-205ENST00000538545 GIGYF1O75420 1035 aaPredicted RBP17.72■□□□□ 0.43
ACTN1-205ENST00000538545 CPDO75976 1380 aa17.72■□□□□ 0.43
ACTN1-205ENST00000538545 PI4KAP2A4QPH2 592 aa17.72■□□□□ 0.43
ACTN1-205ENST00000538545 PI4KAP1Q8N8J0 262 aa17.72■□□□□ 0.43
ACTN1-205ENST00000538545 DDX54Q8TDD1 881 aaKnown RBP17.72■□□□□ 0.43
ACTN1-205ENST00000538545 SPG7Q9UQ90 795 aa17.72■□□□□ 0.43
ACTN1-205ENST00000538545 AIMP1Q12904 312 aaKnown RBP17.71■□□□□ 0.43
ACTN1-205ENST00000538545 IFNL2Q8IZJ0 200 aa17.71■□□□□ 0.43
ACTN1-205ENST00000538545 OTUD7AQ8TE49 926 aaPredicted RBP17.71■□□□□ 0.43
ACTN1-205ENST00000538545 SLC52A2Q9HAB3 445 aa17.71■□□□□ 0.43
ACTN1-205ENST00000538545 BABAM1Q9NWV8 329 aa17.71■□□□□ 0.43
ACTN1-205ENST00000538545 WDR17Q8IZU2 1322 aa17.71■□□□□ 0.43
ACTN1-205ENST00000538545 EVA1CP58658 441 aa17.71■□□□□ 0.42
ACTN1-205ENST00000538545 ZNF790Q6PG37 636 aa17.7■□□□□ 0.42
ACTN1-205ENST00000538545 NOP58Q9Y2X3 529 aaKnown RBP17.7■□□□□ 0.42
ACTN1-205ENST00000538545 ERICH6Q7L0X2 663 aa17.7■□□□□ 0.42
ACTN1-205ENST00000538545 ANKRD44Q8N8A2 993 aa17.7■□□□□ 0.42
ACTN1-205ENST00000538545 ZNF496Q96IT1 587 aaPredicted RBP17.7■□□□□ 0.42
ACTN1-205ENST00000538545 MYL6BP14649 208 aa17.69■□□□□ 0.42
ACTN1-205ENST00000538545 COL5A2P05997 1499 aaPredicted RBP17.69■□□□□ 0.42
ACTN1-205ENST00000538545 PNMA6EA0A0J9YXQ4 647 aa17.69■□□□□ 0.42
ACTN1-205ENST00000538545 CCT4P50991 539 aaKnown RBP17.69■□□□□ 0.42
ACTN1-205ENST00000538545 CHMP4BQ9H444 224 aaKnown RBP17.69■□□□□ 0.42
ACTN1-205ENST00000538545 BTG4Q9NY30 223 aa17.69■□□□□ 0.42
ACTN1-205ENST00000538545 ZBTB47Q9UFB7 747 aaPredicted RBP17.68■□□□□ 0.42
ACTN1-205ENST00000538545 USP44Q9H0E7 712 aa17.68■□□□□ 0.42
ACTN1-205ENST00000538545 EXOC6BQ9Y2D4 811 aa17.68■□□□□ 0.42
ACTN1-205ENST00000538545 LRRFIP2Q9Y608 721 aaKnown RBP17.68■□□□□ 0.42
ACTN1-205ENST00000538545 GCC1Q96CN9 775 aa17.67■□□□□ 0.42
ACTN1-205ENST00000538545 USP16Q9Y5T5 823 aa17.67■□□□□ 0.42
ACTN1-205ENST00000538545 PIP4K2BP78356 416 aa17.67■□□□□ 0.42
ACTN1-205ENST00000538545 NBPF7P0C2Y1 421 aaPredicted RBP17.67■□□□□ 0.42
ACTN1-205ENST00000538545 DCTPP1Q9H773 170 aa17.67■□□□□ 0.42
ACTN1-205ENST00000538545 SCN11AQ9UI33 1791 aa17.66■□□□□ 0.42
ACTN1-205ENST00000538545 ABCA3Q99758 1704 aa17.66■□□□□ 0.42
ACTN1-205ENST00000538545 CACNA1FO60840 1977 aa17.66■□□□□ 0.42
ACTN1-205ENST00000538545 SIPA1L3O60292 1781 aaPredicted RBP17.66■□□□□ 0.42
ACTN1-205ENST00000538545 MFAP1P55081 439 aaKnown RBP17.65■□□□□ 0.42
ACTN1-205ENST00000538545 CWF19L2Q2TBE0 894 aaKnown RBP17.65■□□□□ 0.42
ACTN1-205ENST00000538545 ZCRB1Q8TBF4 217 aaKnown RBP17.65■□□□□ 0.42
ACTN1-205ENST00000538545 ADCY9O60503 1353 aa17.65■□□□□ 0.42
ACTN1-205ENST00000538545 ADAMTS2O95450 1211 aa17.65■□□□□ 0.42
ACTN1-205ENST00000538545 CABP4P57796 275 aa17.65■□□□□ 0.42
ACTN1-205ENST00000538545 GNAI2P04899 355 aa17.64■□□□□ 0.41
ACTN1-205ENST00000538545 TSHZ3Q63HK5 1081 aa17.64■□□□□ 0.41
ACTN1-205ENST00000538545 DCAF5Q96JK2 942 aa17.64■□□□□ 0.41
ACTN1-205ENST00000538545 DBF4Q9UBU7 674 aaPredicted RBP17.64■□□□□ 0.41
ACTN1-205ENST00000538545 MAP3K2Q9Y2U5 619 aa17.64■□□□□ 0.41
ACTN1-205ENST00000538545 NHSL1Q5SYE7 1610 aa17.64■□□□□ 0.41
ACTN1-205ENST00000538545 ROBO1Q9Y6N7 1651 aa17.64■□□□□ 0.41
ACTN1-205ENST00000538545 RPAP2Q8IXW5 612 aaPredicted RBP17.64■□□□□ 0.41
ACTN1-205ENST00000538545 DNAAF4Q8WXU2 420 aa17.64■□□□□ 0.41
ACTN1-205ENST00000538545 PDIA6Q15084 440 aa17.63■□□□□ 0.41
ACTN1-205ENST00000538545 HEG1Q9ULI3 1381 aa17.63■□□□□ 0.41
ACTN1-205ENST00000538545 IL2RBP14784 551 aa17.63■□□□□ 0.41
ACTN1-205ENST00000538545 SRCIN1Q9C0H9 1055 aa17.63■□□□□ 0.41
ACTN1-205ENST00000538545 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.63■□□□□ 0.417e-7■■■□□ 15.2
ACTN1-205ENST00000538545 OVOS2A0A0G2JMS6 1433 aa17.63■□□□□ 0.41
ACTN1-205ENST00000538545 PTCD1O75127 700 aaKnown RBP17.62■□□□□ 0.41
ACTN1-205ENST00000538545 C5P01031 1676 aa17.62■□□□□ 0.41
ACTN1-205ENST00000538545 BEND3Q5T5X7 828 aa17.62■□□□□ 0.41
ACTN1-205ENST00000538545 HOXB7P09629 217 aa17.62■□□□□ 0.41
ACTN1-205ENST00000538545 UBTFL1P0CB47 393 aaPredicted RBP17.62■□□□□ 0.41
ACTN1-205ENST00000538545 TTC5Q8N0Z6 440 aa17.62■□□□□ 0.41
ACTN1-205ENST00000538545 JARID2Q92833 1246 aaPredicted RBP17.62■□□□□ 0.41
ACTN1-205ENST00000538545 ANP32EQ9BTT0 268 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms