RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 NCBP3Q53F19 620 aaKnown RBP17.84■□□□□ 0.45
RTN3-207ENST00000536011 AMER1Q5JTC6 1135 aaPredicted RBP17.84■□□□□ 0.45
RTN3-207ENST00000536011 MSL1Q68DK7 614 aa17.84■□□□□ 0.45
RTN3-207ENST00000536011 ASAP1Q9ULH1 1129 aa17.84■□□□□ 0.45
RTN3-207ENST00000536011 CHD4Q14839 1912 aa17.84■□□□□ 0.45
RTN3-207ENST00000536011 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.83■□□□□ 0.44
RTN3-207ENST00000536011 ATP6V1AP38606 617 aa17.83■□□□□ 0.44
RTN3-207ENST00000536011 UBR3Q6ZT12 1888 aa17.83■□□□□ 0.44
RTN3-207ENST00000536011 KDRP35968 1356 aa17.82■□□□□ 0.44
RTN3-207ENST00000536011 PHF14O94880 888 aa17.82■□□□□ 0.44
RTN3-207ENST00000536011 SULT6B1Q6IMI4 303 aa17.82■□□□□ 0.44
RTN3-207ENST00000536011 PELP1Q8IZL8 1130 aaKnown RBP17.82■□□□□ 0.44
RTN3-207ENST00000536011 ATG3Q9NT62 314 aa17.82■□□□□ 0.44
RTN3-207ENST00000536011 ZNF831Q5JPB2 1677 aa17.81■□□□□ 0.44
RTN3-207ENST00000536011 CABP4P57796 275 aa17.81■□□□□ 0.44
RTN3-207ENST00000536011 LINC00116Q8NCU8 138 aa17.81■□□□□ 0.44
RTN3-207ENST00000536011 RNF216Q9NWF9 866 aaPredicted RBP17.81■□□□□ 0.44
RTN3-207ENST00000536011 CD2APQ9Y5K6 639 aa17.81■□□□□ 0.44
RTN3-207ENST00000536011 GNPATO15228 680 aa17.8■□□□□ 0.44
RTN3-207ENST00000536011 IL13P35225 146 aa17.8■□□□□ 0.44
RTN3-207ENST00000536011 MTHFSP49914 203 aa17.8■□□□□ 0.44
RTN3-207ENST00000536011 AEBP1Q8IUX7 1158 aa17.8■□□□□ 0.44
RTN3-207ENST00000536011 NLGN2Q8NFZ4 835 aa17.8■□□□□ 0.44
RTN3-207ENST00000536011 KDM6AO15550 1401 aaPredicted RBP17.8■□□□□ 0.44
RTN3-207ENST00000536011 GRIN3BO60391 1043 aa17.79■□□□□ 0.44
RTN3-207ENST00000536011 ITPK1Q13572 414 aa17.78■□□□□ 0.44
RTN3-207ENST00000536011 RBM42Q9BTD8 480 aaKnown RBP17.78■□□□□ 0.44
RTN3-207ENST00000536011 ZNF784Q8NCA9 323 aaPredicted RBP17.77■□□□□ 0.44
RTN3-207ENST00000536011 NPC1L1Q9UHC9 1359 aa17.77■□□□□ 0.43
RTN3-207ENST00000536011 PER1O15534 1290 aaPredicted RBP17.76■□□□□ 0.43
RTN3-207ENST00000536011 RTCBQ9Y3I0 505 aaKnown RBP17.76■□□□□ 0.43
RTN3-207ENST00000536011 AKAP4Q5JQC9 854 aa17.75■□□□□ 0.43
RTN3-207ENST00000536011 CC2D1BQ5T0F9 858 aaKnown RBP17.75■□□□□ 0.43
RTN3-207ENST00000536011 RC3H1Q5TC82 1133 aaKnown RBP17.75■□□□□ 0.43
RTN3-207ENST00000536011 AMIGO3Q86WK7 504 aa17.75■□□□□ 0.43
RTN3-207ENST00000536011 CNTNAP4Q9C0A0 1308 aa17.74■□□□□ 0.43
RTN3-207ENST00000536011 DIAPH1O60610 1272 aaKnown RBP17.74■□□□□ 0.43
RTN3-207ENST00000536011 TRAPPC3LQ5T215 181 aa17.74■□□□□ 0.43
RTN3-207ENST00000536011 COL5A3P25940 1745 aaPredicted RBP17.74■□□□□ 0.43
RTN3-207ENST00000536011 SCN11AQ9UI33 1791 aa17.72■□□□□ 0.43
RTN3-207ENST00000536011 NFATC2IPQ8NCF5 419 aa17.72■□□□□ 0.43
RTN3-207ENST00000536011 PTCD1O75127 700 aaKnown RBP17.71■□□□□ 0.43
RTN3-207ENST00000536011 SMIM5Q71RC9 77 aa17.71■□□□□ 0.43
RTN3-207ENST00000536011 NLGN1Q8N2Q7 840 aa17.71■□□□□ 0.43
RTN3-207ENST00000536011 SLC4A9Q96Q91 983 aa17.71■□□□□ 0.43
RTN3-207ENST00000536011 CICQ96RK0 1608 aaPredicted RBP17.7■□□□□ 0.42
RTN3-207ENST00000536011 RPS6KA4O75676 772 aa17.7■□□□□ 0.42
RTN3-207ENST00000536011 HMOX1P09601 288 aa17.7■□□□□ 0.42
RTN3-207ENST00000536011 YBX3P16989 372 aaKnown RBP eCLIP17.7■□□□□ 0.422e-9■□□□□ 10.1
RTN3-207ENST00000536011 RFC4P35249 363 aa17.7■□□□□ 0.42
RTN3-207ENST00000536011 CACNB1Q02641 598 aaPredicted RBP17.7■□□□□ 0.42
RTN3-207ENST00000536011 MRC1P22897 1456 aa17.69■□□□□ 0.42
RTN3-207ENST00000536011 MMP10P09238 476 aa17.69■□□□□ 0.42
RTN3-207ENST00000536011 SLC52A2Q9HAB3 445 aa17.69■□□□□ 0.42
RTN3-207ENST00000536011 ARHGEF1Q92888 912 aaKnown RBP17.67■□□□□ 0.42
RTN3-207ENST00000536011 CRKLP46109 303 aaKnown RBP17.66■□□□□ 0.42
RTN3-207ENST00000536011 CFAP53Q96M91 514 aa17.66■□□□□ 0.42
RTN3-207ENST00000536011 COL3A1P02461 1466 aaPredicted RBP17.66■□□□□ 0.42
RTN3-207ENST00000536011 TJP1Q07157 1748 aa17.66■□□□□ 0.42
RTN3-207ENST00000536011 U2SURPO15042 1029 aaKnown RBP17.65■□□□□ 0.42
RTN3-207ENST00000536011 RNMTO43148 476 aaKnown RBP17.65■□□□□ 0.42
RTN3-207ENST00000536011 CNGB1Q14028 1251 aaPredicted RBP17.65■□□□□ 0.42
RTN3-207ENST00000536011 CCDC87Q9NVE4 849 aa17.65■□□□□ 0.42
RTN3-207ENST00000536011 C4AP0C0L4 1744 aa17.64■□□□□ 0.41
RTN3-207ENST00000536011 GYS1P13807 737 aa17.64■□□□□ 0.41
RTN3-207ENST00000536011 MTHFSDQ2M296 383 aaKnown RBP17.64■□□□□ 0.41
RTN3-207ENST00000536011 GAS2L2Q8NHY3 880 aa17.64■□□□□ 0.41
RTN3-207ENST00000536011 PARP3Q9Y6F1 533 aa17.64■□□□□ 0.41
RTN3-207ENST00000536011 ADAMTS7Q9UKP4 1686 aa17.64■□□□□ 0.41
RTN3-207ENST00000536011 MYH14Q7Z406 1995 aaKnown RBP17.63■□□□□ 0.41
RTN3-207ENST00000536011 GIGYF1O75420 1035 aaPredicted RBP17.63■□□□□ 0.41
RTN3-207ENST00000536011 TGFB2P61812 414 aa17.63■□□□□ 0.41
RTN3-207ENST00000536011 LGR6Q9HBX8 967 aa17.63■□□□□ 0.41
RTN3-207ENST00000536011 VIRMAQ69YN4 1812 aaKnown RBP17.63■□□□□ 0.41
RTN3-207ENST00000536011 KIF13BQ9NQT8 1826 aa17.63■□□□□ 0.41
RTN3-207ENST00000536011 C10orf71Q711Q0 1435 aa17.63■□□□□ 0.41
RTN3-207ENST00000536011 USP42Q9H9J4 1324 aaKnown RBP17.62■□□□□ 0.41
RTN3-207ENST00000536011 TTC5Q8N0Z6 440 aa17.61■□□□□ 0.41
RTN3-207ENST00000536011 VSIG10Q8N0Z9 540 aa17.61■□□□□ 0.41
RTN3-207ENST00000536011 NUDCQ9Y266 331 aa17.61■□□□□ 0.41
RTN3-207ENST00000536011 PXDNLA1KZ92 1463 aa17.61■□□□□ 0.41
RTN3-207ENST00000536011 GNAT3A8MTJ3 354 aa17.6■□□□□ 0.41
RTN3-207ENST00000536011 ZPR1O75312 459 aa17.6■□□□□ 0.41
RTN3-207ENST00000536011 TEFQ10587 303 aa17.6■□□□□ 0.41
RTN3-207ENST00000536011 DNAJC10Q8IXB1 793 aa17.6■□□□□ 0.41
RTN3-207ENST00000536011 KCPQ6ZWJ8 1503 aa17.6■□□□□ 0.41
RTN3-207ENST00000536011 C1QTNF8P60827 252 aa17.59■□□□□ 0.41
RTN3-207ENST00000536011 INTS5Q6P9B9 1019 aaKnown RBP17.59■□□□□ 0.41
RTN3-207ENST00000536011 ATP10DQ9P241 1426 aa17.58■□□□□ 0.41
RTN3-207ENST00000536011 CYP19A1P11511 503 aaPredicted RBP17.58■□□□□ 0.4
RTN3-207ENST00000536011 SLC39A6Q13433 755 aa17.58■□□□□ 0.4
RTN3-207ENST00000536011 RNF39Q9H2S5 420 aa17.58■□□□□ 0.4
RTN3-207ENST00000536011 SOS1Q07889 1333 aaPredicted RBP17.57■□□□□ 0.4
RTN3-207ENST00000536011 STARD3NLO95772 234 aa17.57■□□□□ 0.4
RTN3-207ENST00000536011 SRP68Q9UHB9 627 aaKnown RBP17.57■□□□□ 0.4
RTN3-207ENST00000536011 WWC3Q9ULE0 1092 aa17.57■□□□□ 0.4
RTN3-207ENST00000536011 UBR2Q8IWV8 1755 aa17.57■□□□□ 0.4
RTN3-207ENST00000536011 ADCY9O60503 1353 aa17.56■□□□□ 0.4
RTN3-207ENST00000536011 FKBP8Q14318 412 aa17.56■□□□□ 0.4
RTN3-207ENST00000536011 KIAA1551Q9HCM1 1747 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms