RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ATF3P18847 181 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 CALD1Q05682 793 aaKnown RBP7.97□□□□□ -1.13
SYNE1-233ENST00000535896 WAPLQ7Z5K2 1190 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 SMC5Q8IY18 1101 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 SLC12A5Q9H2X9 1139 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 TERF2IPQ9NYB0 399 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 PDZRN3Q9UPQ7 1066 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 PCDHB15Q9Y5E8 787 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 NRKQ7Z2Y5 1582 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 MAP2P11137 1827 aaKnown RBP7.97□□□□□ -1.13
SYNE1-233ENST00000535896 CDK12Q9NYV4 1490 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-233ENST00000535896 AKAP12Q02952 1782 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 ATF7IPQ6VMQ6 1270 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 RBM33Q96EV2 1170 aaKnown RBP7.97□□□□□ -1.13
SYNE1-233ENST00000535896 PLEKHF1Q96S99 279 aa7.97□□□□□ -1.13
SYNE1-233ENST00000535896 ITSN1Q15811 1721 aa7.96□□□□□ -1.13
SYNE1-233ENST00000535896 KIF24Q5T7B8 1368 aa7.96□□□□□ -1.13
SYNE1-233ENST00000535896 FMN2Q9NZ56 1722 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 DDX11L8A8MPP1 907 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 UBAP1LF5GYI3 381 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 RLBP1P12271 317 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 SLC4A3P48751 1232 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 VSIG10Q8N0Z9 540 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 ARHGAP45Q92619 1136 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 SNX21Q969T3 373 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 RSPH6AQ9H0K4 717 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 CHMP5Q9NZZ3 219 aa7.96□□□□□ -1.14
SYNE1-233ENST00000535896 DLG5Q8TDM6 1919 aa7.95□□□□□ -1.14
SYNE1-233ENST00000535896 MST1RQ04912 1400 aa7.95□□□□□ -1.14
SYNE1-233ENST00000535896 ANKARQ7Z5J8 1434 aa7.95□□□□□ -1.14
SYNE1-233ENST00000535896 STK25O00506 426 aa7.95□□□□□ -1.14
SYNE1-233ENST00000535896 ARHGAP33O14559 1287 aa7.95□□□□□ -1.14
SYNE1-233ENST00000535896 U2AF1L5P0DN76 240 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-233ENST00000535896 TMPOP42166 694 aaKnown RBP7.95□□□□□ -1.14
SYNE1-233ENST00000535896 RBM25P49756 843 aaKnown RBP7.95□□□□□ -1.14
SYNE1-233ENST00000535896 U2AF1Q01081 240 aaKnown RBP eCLIP7.95□□□□□ -1.14
SYNE1-233ENST00000535896 SAFB2Q14151 953 aaKnown RBP eCLIP7.95□□□□□ -1.14
SYNE1-233ENST00000535896 TMC2Q8TDI7 906 aa7.95□□□□□ -1.14
SYNE1-233ENST00000535896 BBXQ8WY36 941 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-233ENST00000535896 TBC1D2Q9BYX2 928 aa7.95□□□□□ -1.14
SYNE1-233ENST00000535896 SMC4Q9NTJ3 1288 aa7.95□□□□□ -1.14
SYNE1-233ENST00000535896 MINK1Q8N4C8 1332 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-233ENST00000535896 WASLO00401 505 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-233ENST00000535896 FCHSD2O94868 740 aa7.94□□□□□ -1.14
SYNE1-233ENST00000535896 TRIM27P14373 513 aa7.94□□□□□ -1.14
SYNE1-233ENST00000535896 ADGRD1Q6QNK2 874 aa7.94□□□□□ -1.14
SYNE1-233ENST00000535896 C22orf23Q9BZE7 217 aa7.94□□□□□ -1.14
SYNE1-233ENST00000535896 BRPF3Q9ULD4 1205 aa7.94□□□□□ -1.14
SYNE1-233ENST00000535896 AATKQ6ZMQ8 1374 aa7.94□□□□□ -1.14
SYNE1-233ENST00000535896 N4BP2Q86UW6 1770 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-233ENST00000535896 FSD2A1L4K1 749 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 TK2O00142 265 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 BMP2KLQ5H9B9 411 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 HDGFL2Q7Z4V5 671 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-233ENST00000535896 HSCBQ8IWL3 235 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 FBXO41Q8TF61 875 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 GCC1Q96CN9 775 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 ZBTB40Q9NUA8 1239 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 SLAIN2Q9P270 581 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 C1orf167Q5SNV9 1468 aa7.93□□□□□ -1.14
SYNE1-233ENST00000535896 EDC4Q6P2E9 1401 aaKnown RBP7.92□□□□□ -1.14
SYNE1-233ENST00000535896 KIF1AQ12756 1690 aa7.92□□□□□ -1.14
SYNE1-233ENST00000535896 IBTKQ9P2D0 1353 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-233ENST00000535896 MCM4P33991 863 aa7.92□□□□□ -1.14
SYNE1-233ENST00000535896 NUCB1Q02818 461 aa7.92□□□□□ -1.14
SYNE1-233ENST00000535896 LMOD3Q0VAK6 560 aa7.92□□□□□ -1.14
SYNE1-233ENST00000535896 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-233ENST00000535896 RRP7AQ9Y3A4 280 aaKnown RBP7.92□□□□□ -1.14
SYNE1-233ENST00000535896 CPSF1Q10570 1443 aaKnown RBP7.92□□□□□ -1.14
SYNE1-233ENST00000535896 TOPAZ1Q8N9V7 1692 aa7.91□□□□□ -1.14
SYNE1-233ENST00000535896 ROBO1Q9Y6N7 1651 aa7.91□□□□□ -1.14
SYNE1-233ENST00000535896 GOLGA6L3A6NEY3 463 aa7.91□□□□□ -1.14
SYNE1-233ENST00000535896 DIAPH1O60610 1272 aaKnown RBP7.91□□□□□ -1.14
SYNE1-233ENST00000535896 DDIT3P35638 169 aa7.91□□□□□ -1.14
SYNE1-233ENST00000535896 EXOSC9Q06265 439 aaKnown RBP7.91□□□□□ -1.14
SYNE1-233ENST00000535896 NEUROD2Q15784 382 aa7.91□□□□□ -1.14
SYNE1-233ENST00000535896 SKOR2Q2VWA4 1001 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-233ENST00000535896 ITPRIPQ8IWB1 547 aa7.91□□□□□ -1.14
SYNE1-233ENST00000535896 SSH1Q8WYL5 1049 aa7.91□□□□□ -1.14
SYNE1-233ENST00000535896 CDK19Q9BWU1 502 aa7.91□□□□□ -1.14
SYNE1-233ENST00000535896 CACNA1FO60840 1977 aa7.9□□□□□ -1.14
SYNE1-233ENST00000535896 FYB1O15117 783 aa7.9□□□□□ -1.14
SYNE1-233ENST00000535896 RGL2O15211 777 aa7.9□□□□□ -1.14
SYNE1-233ENST00000535896 MRE11P49959 708 aa7.9□□□□□ -1.14
SYNE1-233ENST00000535896 SRPK2P78362 688 aaKnown RBP7.9□□□□□ -1.14
SYNE1-233ENST00000535896 BRINP3Q76B58 766 aa7.9□□□□□ -1.14
SYNE1-233ENST00000535896 SLKQ9H2G2 1235 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-233ENST00000535896 ABCC4O15439 1325 aa7.9□□□□□ -1.15
SYNE1-233ENST00000535896 NHSL1Q5SYE7 1610 aa7.89□□□□□ -1.15
SYNE1-233ENST00000535896 AHDC1Q5TGY3 1603 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-233ENST00000535896 TNNT2P45379 298 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-233ENST00000535896 PIP4K2BP78356 416 aa7.89□□□□□ -1.15
SYNE1-233ENST00000535896 CLEC17AQ6ZS10 378 aa7.89□□□□□ -1.15
SYNE1-233ENST00000535896 NUDT16Q96DE0 195 aaKnown RBP7.89□□□□□ -1.15
SYNE1-233ENST00000535896 GBP4Q96PP9 640 aa7.89□□□□□ -1.15
SYNE1-233ENST00000535896 BCL2L13Q9BXK5 485 aa7.89□□□□□ -1.15
SYNE1-233ENST00000535896 IFT57Q9NWB7 429 aa7.89□□□□□ -1.15
SYNE1-233ENST00000535896 RGPD1P0DJD0 1748 aa7.89□□□□□ -1.15
SYNE1-233ENST00000535896 PRR36Q9H6K5 1346 aa7.89□□□□□ -1.15
SYNE1-233ENST00000535896 RIPK4P57078 832 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms