RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 CPS1P31327 1500 aa16.28■□□□□ 0.2
HDAC4-214ENST00000535493 KIF20BQ96Q89 1820 aa16.28■□□□□ 0.2
HDAC4-214ENST00000535493 MX1P20591 662 aa16.27■□□□□ 0.2
HDAC4-214ENST00000535493 CHMLP26374 656 aa16.27■□□□□ 0.2
HDAC4-214ENST00000535493 NUTM1Q86Y26 1132 aa16.27■□□□□ 0.2
HDAC4-214ENST00000535493 ARHGAP31Q2M1Z3 1444 aa16.27■□□□□ 0.2
HDAC4-214ENST00000535493 CPA1P15085 419 aa16.27■□□□□ 0.19
HDAC4-214ENST00000535493 MBD3O95983 291 aa16.26■□□□□ 0.19
HDAC4-214ENST00000535493 LRRCC1Q9C099 1032 aa16.26■□□□□ 0.19
HDAC4-214ENST00000535493 FKBP5Q13451 457 aaPredicted RBP16.26■□□□□ 0.19
HDAC4-214ENST00000535493 CNPY2Q9Y2B0 182 aa16.26■□□□□ 0.19
HDAC4-214ENST00000535493 CCDC61Q9Y6R9 512 aa16.26■□□□□ 0.19
HDAC4-214ENST00000535493 GNAI2P04899 355 aa16.25■□□□□ 0.19
HDAC4-214ENST00000535493 DDX54Q8TDD1 881 aaKnown RBP16.25■□□□□ 0.19
HDAC4-214ENST00000535493 HCLS1P14317 486 aaPredicted RBP16.25■□□□□ 0.19
HDAC4-214ENST00000535493 PTPRCP08575 1304 aa16.25■□□□□ 0.19
HDAC4-214ENST00000535493 MTHFSDQ2M296 383 aaKnown RBP16.25■□□□□ 0.19
HDAC4-214ENST00000535493 KIF24Q5T7B8 1368 aa16.24■□□□□ 0.19
HDAC4-214ENST00000535493 EDC4Q6P2E9 1401 aaKnown RBP16.24■□□□□ 0.19
HDAC4-214ENST00000535493 CUL4AQ13619 759 aa16.24■□□□□ 0.19
HDAC4-214ENST00000535493 LRRFIP2Q9Y608 721 aaKnown RBP16.24■□□□□ 0.19
HDAC4-214ENST00000535493 METP08581 1390 aa16.24■□□□□ 0.19
HDAC4-214ENST00000535493 TMEM131LA2VDJ0 1609 aa16.24■□□□□ 0.19
HDAC4-214ENST00000535493 SRCIN1Q9C0H9 1055 aa16.24■□□□□ 0.19
HDAC4-214ENST00000535493 OSBPL3Q9H4L5 887 aa16.24■□□□□ 0.19
HDAC4-214ENST00000535493 CDK12Q9NYV4 1490 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-214ENST00000535493 MCCP23508 829 aa16.23■□□□□ 0.19
HDAC4-214ENST00000535493 PRR36Q9H6K5 1346 aa16.23■□□□□ 0.19
HDAC4-214ENST00000535493 CPSF1Q10570 1443 aaKnown RBP16.23■□□□□ 0.19
HDAC4-214ENST00000535493 FIBPO43427 364 aa16.23■□□□□ 0.19
HDAC4-214ENST00000535493 KIAA2012Q0VF49 1180 aa16.23■□□□□ 0.19
HDAC4-214ENST00000535493 SASS6Q6UVJ0 657 aa16.23■□□□□ 0.19
HDAC4-214ENST00000535493 CSPP1Q1MSJ5 1256 aa16.22■□□□□ 0.19
HDAC4-214ENST00000535493 RTF1Q92541 710 aaKnown RBP16.22■□□□□ 0.19
HDAC4-214ENST00000535493 TCHHQ07283 1943 aa16.22■□□□□ 0.19
HDAC4-214ENST00000535493 TERF1P54274 439 aa16.22■□□□□ 0.19
HDAC4-214ENST00000535493 CHMP3Q9Y3E7 222 aa16.22■□□□□ 0.19
HDAC4-214ENST00000535493 ADCY5O95622 1261 aa16.21■□□□□ 0.19
HDAC4-214ENST00000535493 ATP7BP35670 1465 aa16.21■□□□□ 0.19
HDAC4-214ENST00000535493 MAP3K19Q56UN5 1328 aa16.21■□□□□ 0.19
HDAC4-214ENST00000535493 SALL3Q9BXA9 1300 aa16.21■□□□□ 0.19
HDAC4-214ENST00000535493 GIMAP6Q6P9H5 292 aa16.21■□□□□ 0.19
HDAC4-214ENST00000535493 CLTCQ00610 1675 aaKnown RBP16.21■□□□□ 0.18
HDAC4-214ENST00000535493 FLIIQ13045 1269 aa16.2■□□□□ 0.18
HDAC4-214ENST00000535493 SPG7Q9UQ90 795 aa16.2■□□□□ 0.18
HDAC4-214ENST00000535493 CCT4P50991 539 aaKnown RBP16.2■□□□□ 0.18
HDAC4-214ENST00000535493 RASEFQ8IZ41 740 aa16.2■□□□□ 0.18
HDAC4-214ENST00000535493 REREQ9P2R6 1566 aa16.2■□□□□ 0.18
HDAC4-214ENST00000535493 DIP2CQ9Y2E4 1556 aa16.2■□□□□ 0.18
HDAC4-214ENST00000535493 AATKQ6ZMQ8 1374 aa16.2■□□□□ 0.18
HDAC4-214ENST00000535493 DYNC1I1O14576 645 aa16.19■□□□□ 0.18
HDAC4-214ENST00000535493 STK31Q9BXU1 1019 aa16.19■□□□□ 0.18
HDAC4-214ENST00000535493 MCM5P33992 734 aa16.18■□□□□ 0.18
HDAC4-214ENST00000535493 MCM2P49736 904 aa16.18■□□□□ 0.18
HDAC4-214ENST00000535493 HAP1P54257 671 aaPredicted RBP16.18■□□□□ 0.18
HDAC4-214ENST00000535493 SPC24Q8NBT2 197 aa16.18■□□□□ 0.18
HDAC4-214ENST00000535493 SYAP1Q96A49 352 aaPredicted RBP16.18■□□□□ 0.18
HDAC4-214ENST00000535493 NOLC1Q14978 699 aaKnown RBP eCLIP16.18■□□□□ 0.18
HDAC4-214ENST00000535493 CWC27Q6UX04 472 aaKnown RBP16.18■□□□□ 0.18
HDAC4-214ENST00000535493 PRDM4Q9UKN5 801 aa16.18■□□□□ 0.18
HDAC4-214ENST00000535493 LARGE1O95461 756 aa16.18■□□□□ 0.18
HDAC4-214ENST00000535493 INTS4Q96HW7 963 aaKnown RBP16.18■□□□□ 0.18
HDAC4-214ENST00000535493 BCL11BQ9C0K0 894 aaPredicted RBP16.18■□□□□ 0.18
HDAC4-214ENST00000535493 ZHX1Q9UKY1 873 aaPredicted RBP16.18■□□□□ 0.18
HDAC4-214ENST00000535493 ACEP12821 1306 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 CRB1P82279 1406 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 AP5Z1O43299 807 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 SURF6O75683 361 aaKnown RBP16.17■□□□□ 0.18
HDAC4-214ENST00000535493 AK2P54819 239 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 ATP8B2P98198 1209 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 NUTM2GQ5VZR2 741 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 PHAXQ9H814 394 aaKnown RBP16.17■□□□□ 0.18
HDAC4-214ENST00000535493 KIAA0232Q92628 1395 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 TTC21BQ7Z4L5 1316 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 WDR33Q9C0J8 1336 aaKnown RBP16.17■□□□□ 0.18
HDAC4-214ENST00000535493 SYT1P21579 422 aa16.17■□□□□ 0.18
HDAC4-214ENST00000535493 USP44Q9H0E7 712 aa16.16■□□□□ 0.18
HDAC4-214ENST00000535493 RPAP1Q9BWH6 1393 aaPredicted RBP16.16■□□□□ 0.18
HDAC4-214ENST00000535493 ZNF710Q8N1W2 664 aa16.16■□□□□ 0.18
HDAC4-214ENST00000535493 LTV1Q96GA3 475 aaPredicted RBP16.16■□□□□ 0.18
HDAC4-214ENST00000535493 PREX1Q8TCU6 1659 aa16.15■□□□□ 0.18
HDAC4-214ENST00000535493 SNX14Q9Y5W7 946 aa16.15■□□□□ 0.18
HDAC4-214ENST00000535493 CBX1P83916 185 aa16.15■□□□□ 0.18
HDAC4-214ENST00000535493 DNM1Q05193 864 aaKnown RBP16.15■□□□□ 0.18
HDAC4-214ENST00000535493 COL9A3Q14050 684 aaPredicted RBP16.15■□□□□ 0.18
HDAC4-214ENST00000535493 FAM173BQ6P4H8 233 aa16.15■□□□□ 0.18
HDAC4-214ENST00000535493 RUFY3Q7L099 469 aa16.15■□□□□ 0.18
HDAC4-214ENST00000535493 EIF2S2P20042 333 aaKnown RBP16.14■□□□□ 0.17
HDAC4-214ENST00000535493 HSPA4P34932 840 aa16.14■□□□□ 0.17
HDAC4-214ENST00000535493 ANAPC15P60006 121 aa16.14■□□□□ 0.17
HDAC4-214ENST00000535493 PPP1R42Q7Z4L9 355 aa16.14■□□□□ 0.17
HDAC4-214ENST00000535493 CCDC83Q8IWF9 413 aa16.14■□□□□ 0.17
HDAC4-214ENST00000535493 STX6O43752 255 aa16.14■□□□□ 0.17
HDAC4-214ENST00000535493 ANXA1P04083 346 aa16.14■□□□□ 0.17
HDAC4-214ENST00000535493 CCDC183Q5T5S1 534 aa16.14■□□□□ 0.17
HDAC4-214ENST00000535493 MAP7D2Q96T17 732 aa16.14■□□□□ 0.17
HDAC4-214ENST00000535493 PHF14O94880 888 aa16.13■□□□□ 0.17
HDAC4-214ENST00000535493 GNAI3P08754 354 aa16.13■□□□□ 0.17
HDAC4-214ENST00000535493 UBTFL1P0CB47 393 aaPredicted RBP16.13■□□□□ 0.17
HDAC4-214ENST00000535493 ZSCAN22P10073 491 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms