RNA–Protein interactions for RNA: ENST00000533789.5

HIF3A-216, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-216ENST00000533789 ERVV-2B6SEH9 535 aa25.09■■□□□ 1.61
HIF3A-216ENST00000533789 ZNF530Q6P9A1 599 aaPredicted RBP25.09■■□□□ 1.61
HIF3A-216ENST00000533789 PER1O15534 1290 aaPredicted RBP25.08■■□□□ 1.61
HIF3A-216ENST00000533789 IL13P35225 146 aa25.08■■□□□ 1.61
HIF3A-216ENST00000533789 GOLGB1Q14789 3259 aaKnown RBP25.08■■□□□ 1.61
HIF3A-216ENST00000533789 TJP1Q07157 1748 aa25.08■■□□□ 1.61
HIF3A-216ENST00000533789 MSL1Q68DK7 614 aa25.07■■□□□ 1.6
HIF3A-216ENST00000533789 LINC00116Q8NCU8 138 aa25.07■■□□□ 1.6
HIF3A-216ENST00000533789 ATG3Q9NT62 314 aa25.07■■□□□ 1.6
HIF3A-216ENST00000533789 ADAMTS7Q9UKP4 1686 aa25.07■■□□□ 1.6
HIF3A-216ENST00000533789 SULT6B1Q6IMI4 303 aa25.06■■□□□ 1.6
HIF3A-216ENST00000533789 AMIGO3Q86WK7 504 aa25.06■■□□□ 1.6
HIF3A-216ENST00000533789 KIF13BQ9NQT8 1826 aa25.05■■□□□ 1.6
HIF3A-216ENST00000533789 SSFA2P28290 1259 aa25.05■■□□□ 1.6
HIF3A-216ENST00000533789 ATP6V1AP38606 617 aa25.05■■□□□ 1.6
HIF3A-216ENST00000533789 ITPK1Q13572 414 aa25.05■■□□□ 1.6
HIF3A-216ENST00000533789 NPC1L1Q9UHC9 1359 aa25.05■■□□□ 1.6
HIF3A-216ENST00000533789 PHF14O94880 888 aa25.04■■□□□ 1.6
HIF3A-216ENST00000533789 C1orf141Q5JVX7 400 aa25.04■■□□□ 1.6
HIF3A-216ENST00000533789 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.03■■□□□ 1.6
HIF3A-216ENST00000533789 MTHFSP49914 203 aa25.03■■□□□ 1.6
HIF3A-216ENST00000533789 NLGN2Q8NFZ4 835 aa25.03■■□□□ 1.6
HIF3A-216ENST00000533789 COL3A1P02461 1466 aaPredicted RBP25.02■■□□□ 1.6
HIF3A-216ENST00000533789 CC2D1BQ5T0F9 858 aaKnown RBP25.02■■□□□ 1.6
HIF3A-216ENST00000533789 MRC1P22897 1456 aa25.02■■□□□ 1.6
HIF3A-216ENST00000533789 GNPATO15228 680 aa25■■□□□ 1.59
HIF3A-216ENST00000533789 CABP4P57796 275 aa25■■□□□ 1.59
HIF3A-216ENST00000533789 GPR162Q16538 588 aa25■■□□□ 1.59
HIF3A-216ENST00000533789 UBR2Q8IWV8 1755 aa25■■□□□ 1.59
HIF3A-216ENST00000533789 SMIM5Q71RC9 77 aa24.99■■□□□ 1.59
HIF3A-216ENST00000533789 SLC4A9Q96Q91 983 aa24.98■■□□□ 1.59
HIF3A-216ENST00000533789 RBM42Q9BTD8 480 aaKnown RBP24.98■■□□□ 1.59
HIF3A-216ENST00000533789 SIPA1L3O60292 1781 aaPredicted RBP24.98■■□□□ 1.59
HIF3A-216ENST00000533789 KIAA1551Q9HCM1 1747 aa24.98■■□□□ 1.59
HIF3A-216ENST00000533789 N4BP2Q86UW6 1770 aaPredicted RBP24.95■■□□□ 1.59
HIF3A-216ENST00000533789 CNTNAP4Q9C0A0 1308 aa24.95■■□□□ 1.58
HIF3A-216ENST00000533789 DIAPH1O60610 1272 aaKnown RBP24.95■■□□□ 1.58
HIF3A-216ENST00000533789 AKAP4Q5JQC9 854 aa24.95■■□□□ 1.58
HIF3A-216ENST00000533789 PELP1Q8IZL8 1130 aaKnown RBP24.95■■□□□ 1.58
HIF3A-216ENST00000533789 CD2APQ9Y5K6 639 aa24.95■■□□□ 1.58
HIF3A-216ENST00000533789 HMOX1P09601 288 aa24.94■■□□□ 1.58
HIF3A-216ENST00000533789 BRCA1P38398 1863 aaKnown RBP24.94■■□□□ 1.58
HIF3A-216ENST00000533789 NFATC2IPQ8NCF5 419 aa24.93■■□□□ 1.58
HIF3A-216ENST00000533789 RC3H1Q5TC82 1133 aaKnown RBP24.92■■□□□ 1.58
HIF3A-216ENST00000533789 ZNF784Q8NCA9 323 aaPredicted RBP24.92■■□□□ 1.58
HIF3A-216ENST00000533789 RTCBQ9Y3I0 505 aaKnown RBP24.92■■□□□ 1.58
HIF3A-216ENST00000533789 YBX3P16989 372 aaKnown RBP eCLIP24.9■■□□□ 1.58
HIF3A-216ENST00000533789 PTCD1O75127 700 aaKnown RBP24.89■■□□□ 1.58
HIF3A-216ENST00000533789 ADRA2BP18089 450 aa24.89■■□□□ 1.58
HIF3A-216ENST00000533789 SLC52A2Q9HAB3 445 aa24.89■■□□□ 1.58
HIF3A-216ENST00000533789 KCPQ6ZWJ8 1503 aa24.89■■□□□ 1.57
HIF3A-216ENST00000533789 TRAPPC3LQ5T215 181 aa24.88■■□□□ 1.57
HIF3A-216ENST00000533789 GRIN3BO60391 1043 aa24.87■■□□□ 1.57
HIF3A-216ENST00000533789 CNGB1Q14028 1251 aaPredicted RBP24.87■■□□□ 1.57
HIF3A-216ENST00000533789 RNMTO43148 476 aaKnown RBP24.86■■□□□ 1.57
HIF3A-216ENST00000533789 RPS6KA4O75676 772 aa24.86■■□□□ 1.57
HIF3A-216ENST00000533789 MTHFSDQ2M296 383 aaKnown RBP24.86■■□□□ 1.57
HIF3A-216ENST00000533789 LGR6Q9HBX8 967 aa24.86■■□□□ 1.57
HIF3A-216ENST00000533789 ARHGEF1Q92888 912 aaKnown RBP24.85■■□□□ 1.57
HIF3A-216ENST00000533789 ARFGEF1Q9Y6D6 1849 aa24.84■■□□□ 1.57
HIF3A-216ENST00000533789 MMP10P09238 476 aa24.84■■□□□ 1.57
HIF3A-216ENST00000533789 CRKLP46109 303 aaKnown RBP24.84■■□□□ 1.57
HIF3A-216ENST00000533789 AFDNP55196 1824 aaKnown RBP24.84■■□□□ 1.57
HIF3A-216ENST00000533789 U2SURPO15042 1029 aaKnown RBP24.82■■□□□ 1.56
HIF3A-216ENST00000533789 RFC4P35249 363 aa24.82■■□□□ 1.56
HIF3A-216ENST00000533789 C10orf71Q711Q0 1435 aa24.82■■□□□ 1.56
HIF3A-216ENST00000533789 NLGN1Q8N2Q7 840 aa24.82■■□□□ 1.56
HIF3A-216ENST00000533789 DLG5Q8TDM6 1919 aa24.81■■□□□ 1.56
HIF3A-216ENST00000533789 GYS1P13807 737 aa24.81■■□□□ 1.56
HIF3A-216ENST00000533789 PXDNLA1KZ92 1463 aa24.8■■□□□ 1.56
HIF3A-216ENST00000533789 SLC39A6Q13433 755 aa24.78■■□□□ 1.56
HIF3A-216ENST00000533789 CFAP53Q96M91 514 aa24.78■■□□□ 1.56
HIF3A-216ENST00000533789 DNAJC10Q8IXB1 793 aa24.77■■□□□ 1.56
HIF3A-216ENST00000533789 GAS2L2Q8NHY3 880 aa24.77■■□□□ 1.56
HIF3A-216ENST00000533789 USP42Q9H9J4 1324 aaKnown RBP24.77■■□□□ 1.56
HIF3A-216ENST00000533789 NRXN2Q9P2S2 1712 aa24.77■■□□□ 1.56
HIF3A-216ENST00000533789 INTS5Q6P9B9 1019 aaKnown RBP24.76■■□□□ 1.55
HIF3A-216ENST00000533789 SCN7AQ01118 1682 aa24.75■■□□□ 1.55
HIF3A-216ENST00000533789 DLEC1Q9Y238 1755 aa24.75■■□□□ 1.55
HIF3A-216ENST00000533789 CCDC87Q9NVE4 849 aa24.75■■□□□ 1.55
HIF3A-216ENST00000533789 GNAT3A8MTJ3 354 aa24.74■■□□□ 1.55
HIF3A-216ENST00000533789 CYP19A1P11511 503 aaPredicted RBP24.73■■□□□ 1.55
HIF3A-216ENST00000533789 PPP2R1AP30153 589 aa24.73■■□□□ 1.55
HIF3A-216ENST00000533789 VSIG10Q8N0Z9 540 aa24.73■■□□□ 1.55
HIF3A-216ENST00000533789 SRP68Q9UHB9 627 aaKnown RBP24.73■■□□□ 1.55
HIF3A-216ENST00000533789 PARP3Q9Y6F1 533 aa24.73■■□□□ 1.55
HIF3A-216ENST00000533789 SOS1Q07889 1333 aaPredicted RBP24.72■■□□□ 1.55
HIF3A-216ENST00000533789 RSPH6AQ9H0K4 717 aa24.72■■□□□ 1.55
HIF3A-216ENST00000533789 WWC3Q9ULE0 1092 aa24.72■■□□□ 1.55
HIF3A-216ENST00000533789 ADCY9O60503 1353 aa24.71■■□□□ 1.55
HIF3A-216ENST00000533789 COL15A1P39059 1388 aa24.71■■□□□ 1.55
HIF3A-216ENST00000533789 CEMIPQ8WUJ3 1361 aa24.71■■□□□ 1.55
HIF3A-216ENST00000533789 PRKAR2BP31323 418 aa24.71■■□□□ 1.55
HIF3A-216ENST00000533789 TGFB2P61812 414 aa24.71■■□□□ 1.55
HIF3A-216ENST00000533789 NUDCQ9Y266 331 aa24.71■■□□□ 1.55
HIF3A-216ENST00000533789 BCORQ6W2J9 1755 aa24.71■■□□□ 1.55
HIF3A-216ENST00000533789 TEFQ10587 303 aa24.7■■□□□ 1.54
HIF3A-216ENST00000533789 TTC5Q8N0Z6 440 aa24.7■■□□□ 1.54
HIF3A-216ENST00000533789 ATP10DQ9P241 1426 aa24.69■■□□□ 1.54
HIF3A-216ENST00000533789 FKBP8Q14318 412 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms