RNA–Protein interactions for RNA: ENST00000533145.5

HIF3A-215, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-215ENST00000533145 TOGARAM1Q9Y4F4 1720 aa18.32■□□□□ 0.52
HIF3A-215ENST00000533145 SEPT12Q8IYM1 358 aa18.32■□□□□ 0.52
HIF3A-215ENST00000533145 FANCIQ9NVI1 1328 aa18.31■□□□□ 0.52
HIF3A-215ENST00000533145 MBIPQ9NS73 344 aa18.31■□□□□ 0.52
HIF3A-215ENST00000533145 BCL9O00512 1426 aa18.31■□□□□ 0.52
HIF3A-215ENST00000533145 RXRBP28702 533 aa18.3■□□□□ 0.52
HIF3A-215ENST00000533145 LAS1LQ9Y4W2 734 aaKnown RBP18.3■□□□□ 0.52
HIF3A-215ENST00000533145 BRWD3Q6RI45 1802 aa18.3■□□□□ 0.52
HIF3A-215ENST00000533145 CT47B1P0C2W7 299 aaPredicted RBP18.29■□□□□ 0.52
HIF3A-215ENST00000533145 CABP4P57796 275 aa18.29■□□□□ 0.52
HIF3A-215ENST00000533145 NFATC2IPQ8NCF5 419 aa18.29■□□□□ 0.52
HIF3A-215ENST00000533145 UPF1Q92900 1129 aaKnown RBP eCLIP18.29■□□□□ 0.52
HIF3A-215ENST00000533145 TSR2Q969E8 191 aaKnown RBP18.29■□□□□ 0.52
HIF3A-215ENST00000533145 TSPYL4Q9UJ04 414 aa18.29■□□□□ 0.52
HIF3A-215ENST00000533145 KAT6BQ8WYB5 2073 aa18.29■□□□□ 0.52
HIF3A-215ENST00000533145 BTBD11A6QL63 1104 aa18.28■□□□□ 0.52
HIF3A-215ENST00000533145 DOT1LQ8TEK3 1739 aa18.27■□□□□ 0.52
HIF3A-215ENST00000533145 A0A0G2JS52 829 aa18.27■□□□□ 0.52
HIF3A-215ENST00000533145 MYT1Q01538 1121 aa18.27■□□□□ 0.52
HIF3A-215ENST00000533145 EXOSC9Q06265 439 aaKnown RBP18.26■□□□□ 0.51
HIF3A-215ENST00000533145 MIS18AQ9NYP9 233 aa18.26■□□□□ 0.51
HIF3A-215ENST00000533145 SBF2Q86WG5 1849 aa18.26■□□□□ 0.51
HIF3A-215ENST00000533145 PAPPAQ13219 1627 aa18.25■□□□□ 0.51
HIF3A-215ENST00000533145 SOS1Q07889 1333 aaPredicted RBP18.24■□□□□ 0.51
HIF3A-215ENST00000533145 ZNF790Q6PG37 636 aa18.24■□□□□ 0.51
HIF3A-215ENST00000533145 ZNF428Q96B54 188 aa18.24■□□□□ 0.51
HIF3A-215ENST00000533145 HEG1Q9ULI3 1381 aa18.24■□□□□ 0.51
HIF3A-215ENST00000533145 UBR2Q8IWV8 1755 aa18.23■□□□□ 0.51
HIF3A-215ENST00000533145 EIF4A1P60842 406 aaKnown RBP18.23■□□□□ 0.51
HIF3A-215ENST00000533145 TMOD3Q9NYL9 352 aa18.23■□□□□ 0.51
HIF3A-215ENST00000533145 VAMP4O75379 141 aa18.22■□□□□ 0.51
HIF3A-215ENST00000533145 PRIM1P49642 420 aaKnown RBP18.22■□□□□ 0.51
HIF3A-215ENST00000533145 KRT27Q7Z3Y8 459 aa18.22■□□□□ 0.51
HIF3A-215ENST00000533145 C8orf58Q8NAV2 365 aa18.22■□□□□ 0.51
HIF3A-215ENST00000533145 PIGBQ92521 554 aa18.22■□□□□ 0.51
HIF3A-215ENST00000533145 KCNQ3O43525 872 aa18.21■□□□□ 0.51
HIF3A-215ENST00000533145 NHSQ6T4R5 1651 aa18.21■□□□□ 0.51
HIF3A-215ENST00000533145 HOXB7P09629 217 aa18.2■□□□□ 0.5
HIF3A-215ENST00000533145 SLC39A6Q13433 755 aa18.2■□□□□ 0.5
HIF3A-215ENST00000533145 TWISTNBQ3B726 338 aaPredicted RBP18.2■□□□□ 0.5
HIF3A-215ENST00000533145 TSPYL6Q8N831 410 aa18.2■□□□□ 0.5
HIF3A-215ENST00000533145 RCAN3Q9UKA8 241 aa18.2■□□□□ 0.5
HIF3A-215ENST00000533145 CACNA1FO60840 1977 aa18.2■□□□□ 0.5
HIF3A-215ENST00000533145 RGS12O14924 1447 aa18.19■□□□□ 0.5
HIF3A-215ENST00000533145 FAM196AQ6ZSG2 479 aa18.19■□□□□ 0.5
HIF3A-215ENST00000533145 TTC5Q8N0Z6 440 aa18.18■□□□□ 0.5
HIF3A-215ENST00000533145 ACSBG1Q96GR2 724 aa18.18■□□□□ 0.5
HIF3A-215ENST00000533145 CHMP4AQ9BY43 222 aa18.18■□□□□ 0.5
HIF3A-215ENST00000533145 ATG3Q9NT62 314 aa18.18■□□□□ 0.5
HIF3A-215ENST00000533145 GIGYF1O75420 1035 aaPredicted RBP18.17■□□□□ 0.5
HIF3A-215ENST00000533145 RARSP54136 660 aaKnown RBP18.17■□□□□ 0.5
HIF3A-215ENST00000533145 KRT24Q2M2I5 525 aa18.17■□□□□ 0.5
HIF3A-215ENST00000533145 ALDH1L2Q3SY69 923 aa18.17■□□□□ 0.5
HIF3A-215ENST00000533145 FMNL2Q96PY5 1086 aa18.17■□□□□ 0.5
HIF3A-215ENST00000533145 KCPQ6ZWJ8 1503 aa18.17■□□□□ 0.5
HIF3A-215ENST00000533145 KCNQ2O43526 872 aa18.16■□□□□ 0.5
HIF3A-215ENST00000533145 BRPF1P55201 1214 aaPredicted RBP18.16■□□□□ 0.5
HIF3A-215ENST00000533145 SYTL4Q96C24 671 aaPredicted RBP18.16■□□□□ 0.5
HIF3A-215ENST00000533145 ZNF496Q96IT1 587 aaPredicted RBP18.16■□□□□ 0.5
HIF3A-215ENST00000533145 ASAP1Q9ULH1 1129 aa18.16■□□□□ 0.5
HIF3A-215ENST00000533145 BTAF1O14981 1849 aa18.15■□□□□ 0.5
HIF3A-215ENST00000533145 ELL2O00472 640 aaPredicted RBP18.15■□□□□ 0.5
HIF3A-215ENST00000533145 FAM182BQ5T319 152 aa18.15■□□□□ 0.5
HIF3A-215ENST00000533145 VSIG10Q8N0Z9 540 aa18.15■□□□□ 0.5
HIF3A-215ENST00000533145 RNF123Q5XPI4 1314 aa18.15■□□□□ 0.5
HIF3A-215ENST00000533145 SNRPA1P09661 255 aaKnown RBP18.14■□□□□ 0.49
HIF3A-215ENST00000533145 SMARCC1Q92922 1105 aaPredicted RBP18.14■□□□□ 0.49
HIF3A-215ENST00000533145 ZNF831Q5JPB2 1677 aa18.14■□□□□ 0.49
HIF3A-215ENST00000533145 BCL11BQ9C0K0 894 aaPredicted RBP18.13■□□□□ 0.49
HIF3A-215ENST00000533145 CICQ96RK0 1608 aaPredicted RBP18.12■□□□□ 0.49
HIF3A-215ENST00000533145 C5P01031 1676 aa18.12■□□□□ 0.49
HIF3A-215ENST00000533145 LAMB4A4D0S4 1761 aa18.12■□□□□ 0.49
HIF3A-215ENST00000533145 CCDC30Q5VVM6 783 aa18.12■□□□□ 0.49
HIF3A-215ENST00000533145 SSH1Q8WYL5 1049 aa18.12■□□□□ 0.49
HIF3A-215ENST00000533145 TEX13AQ9BXU3 409 aaPredicted RBP18.11■□□□□ 0.49
HIF3A-215ENST00000533145 SUPT16HQ9Y5B9 1047 aaKnown RBP18.11■□□□□ 0.49
HIF3A-215ENST00000533145 BCAR3O75815 825 aa18.1■□□□□ 0.49
HIF3A-215ENST00000533145 LY75O60449 1722 aa18.09■□□□□ 0.49
HIF3A-215ENST00000533145 PTCD1O75127 700 aaKnown RBP18.09■□□□□ 0.49
HIF3A-215ENST00000533145 PTF1AQ7RTS3 328 aa18.09■□□□□ 0.49
HIF3A-215ENST00000533145 MRPL50Q8N5N7 158 aaKnown RBP18.09■□□□□ 0.49
HIF3A-215ENST00000533145 PALLDQ8WX93 1383 aa18.08■□□□□ 0.49
HIF3A-215ENST00000533145 PRAMEF22A3QJZ6 481 aa18.08■□□□□ 0.48
HIF3A-215ENST00000533145 HDGFL1Q5TGJ6 251 aa18.08■□□□□ 0.48
HIF3A-215ENST00000533145 SLC4A9Q96Q91 983 aa18.08■□□□□ 0.48
HIF3A-215ENST00000533145 SMC4Q9NTJ3 1288 aa18.08■□□□□ 0.48
HIF3A-215ENST00000533145 USP16Q9Y5T5 823 aa18.08■□□□□ 0.48
HIF3A-215ENST00000533145 TJP1Q07157 1748 aa18.07■□□□□ 0.48
HIF3A-215ENST00000533145 RBM42Q9BTD8 480 aaKnown RBP18.07■□□□□ 0.48
HIF3A-215ENST00000533145 ERBB4Q15303 1308 aa18.06■□□□□ 0.48
HIF3A-215ENST00000533145 LOC102724428A0A0B4J2F2 783 aa18.06■□□□□ 0.48
HIF3A-215ENST00000533145 EIF2S2P20042 333 aaKnown RBP18.06■□□□□ 0.48
HIF3A-215ENST00000533145 RRP1P56182 461 aaKnown RBP18.06■□□□□ 0.48
HIF3A-215ENST00000533145 SIK1P57059 783 aa18.06■□□□□ 0.48
HIF3A-215ENST00000533145 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.06■□□□□ 0.48
HIF3A-215ENST00000533145 ARHGAP45Q92619 1136 aa18.06■□□□□ 0.48
HIF3A-215ENST00000533145 STK31Q9BXU1 1019 aa18.06■□□□□ 0.48
HIF3A-215ENST00000533145 DBF4Q9UBU7 674 aaPredicted RBP18.06■□□□□ 0.48
HIF3A-215ENST00000533145 SRCAPQ6ZRS2 3230 aa18.05■□□□□ 0.48
HIF3A-215ENST00000533145 TRIM37O94972 964 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms