RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 SBF2Q86WG5 1849 aa18.44■□□□□ 0.54
TRIM3-212ENST00000533064 CACNA1FO60840 1977 aa18.44■□□□□ 0.54
TRIM3-212ENST00000533064 FANCIQ9NVI1 1328 aa18.44■□□□□ 0.54
TRIM3-212ENST00000533064 ERVV-2B6SEH9 535 aa18.44■□□□□ 0.54
TRIM3-212ENST00000533064 TSR2Q969E8 191 aaKnown RBP18.44■□□□□ 0.54
TRIM3-212ENST00000533064 SLC52A2Q9HAB3 445 aa18.44■□□□□ 0.54
TRIM3-212ENST00000533064 TSPYL4Q9UJ04 414 aa18.44■□□□□ 0.54
TRIM3-212ENST00000533064 CHL1O00533 1208 aa18.43■□□□□ 0.54
TRIM3-212ENST00000533064 CABP4P57796 275 aa18.43■□□□□ 0.54
TRIM3-212ENST00000533064 SEPT12Q8IYM1 358 aa18.43■□□□□ 0.54
TRIM3-212ENST00000533064 MBIPQ9NS73 344 aa18.43■□□□□ 0.54
TRIM3-212ENST00000533064 RXRBP28702 533 aa18.42■□□□□ 0.54
TRIM3-212ENST00000533064 BTBD11A6QL63 1104 aa18.41■□□□□ 0.54
TRIM3-212ENST00000533064 MARCH10Q8NA82 808 aaPredicted RBP18.41■□□□□ 0.54
TRIM3-212ENST00000533064 NFATC2IPQ8NCF5 419 aa18.41■□□□□ 0.54
TRIM3-212ENST00000533064 MIS18AQ9NYP9 233 aa18.4■□□□□ 0.54
TRIM3-212ENST00000533064 TMOD3Q9NYL9 352 aa18.39■□□□□ 0.53
TRIM3-212ENST00000533064 PAPPAQ13219 1627 aa18.38■□□□□ 0.53
TRIM3-212ENST00000533064 EXOSC9Q06265 439 aaKnown RBP18.38■□□□□ 0.53
TRIM3-212ENST00000533064 RGS17Q9UGC6 210 aaPredicted RBP18.38■□□□□ 0.53
TRIM3-212ENST00000533064 UBR2Q8IWV8 1755 aa18.38■□□□□ 0.53
TRIM3-212ENST00000533064 CT47B1P0C2W7 299 aaPredicted RBP18.37■□□□□ 0.53
TRIM3-212ENST00000533064 SYTL4Q96C24 671 aaPredicted RBP18.37■□□□□ 0.53
TRIM3-212ENST00000533064 NHSQ6T4R5 1651 aa18.36■□□□□ 0.53
TRIM3-212ENST00000533064 NEFLP07196 543 aa18.36■□□□□ 0.53
TRIM3-212ENST00000533064 TTC5Q8N0Z6 440 aa18.36■□□□□ 0.53
TRIM3-212ENST00000533064 POTEAQ6S8J7 498 aa18.35■□□□□ 0.53
TRIM3-212ENST00000533064 SUPT16HQ9Y5B9 1047 aaKnown RBP18.35■□□□□ 0.53
TRIM3-212ENST00000533064 BTAF1O14981 1849 aa18.35■□□□□ 0.53
TRIM3-212ENST00000533064 ZNF790Q6PG37 636 aa18.34■□□□□ 0.53
TRIM3-212ENST00000533064 KRT27Q7Z3Y8 459 aa18.34■□□□□ 0.53
TRIM3-212ENST00000533064 PRIM1P49642 420 aaKnown RBP18.34■□□□□ 0.53
TRIM3-212ENST00000533064 ACSBG1Q96GR2 724 aa18.34■□□□□ 0.53
TRIM3-212ENST00000533064 RCAN3Q9UKA8 241 aa18.34■□□□□ 0.53
TRIM3-212ENST00000533064 BCL9O00512 1426 aa18.33■□□□□ 0.53
TRIM3-212ENST00000533064 TWISTNBQ3B726 338 aaPredicted RBP18.33■□□□□ 0.52
TRIM3-212ENST00000533064 LAMB4A4D0S4 1761 aa18.32■□□□□ 0.52
TRIM3-212ENST00000533064 SLC39A6Q13433 755 aa18.32■□□□□ 0.52
TRIM3-212ENST00000533064 C5P01031 1676 aa18.32■□□□□ 0.52
TRIM3-212ENST00000533064 ELL2O00472 640 aaPredicted RBP18.31■□□□□ 0.52
TRIM3-212ENST00000533064 EIF4A1P60842 406 aaKnown RBP18.31■□□□□ 0.52
TRIM3-212ENST00000533064 C8orf58Q8NAV2 365 aa18.31■□□□□ 0.52
TRIM3-212ENST00000533064 PIGBQ92521 554 aa18.31■□□□□ 0.52
TRIM3-212ENST00000533064 ZNF428Q96B54 188 aa18.31■□□□□ 0.52
TRIM3-212ENST00000533064 RGS12O14924 1447 aa18.31■□□□□ 0.52
TRIM3-212ENST00000533064 SOS1Q07889 1333 aaPredicted RBP18.31■□□□□ 0.52
TRIM3-212ENST00000533064 EP400Q96L91 3159 aa18.3■□□□□ 0.52
TRIM3-212ENST00000533064 KCNQ3O43525 872 aa18.3■□□□□ 0.52
TRIM3-212ENST00000533064 FAM182BQ5T319 152 aa18.3■□□□□ 0.52
TRIM3-212ENST00000533064 FAM196AQ6ZSG2 479 aa18.3■□□□□ 0.52
TRIM3-212ENST00000533064 TSPYL6Q8N831 410 aa18.3■□□□□ 0.52
TRIM3-212ENST00000533064 FMNL2Q96PY5 1086 aa18.3■□□□□ 0.52
TRIM3-212ENST00000533064 CHMP4AQ9BY43 222 aa18.3■□□□□ 0.52
TRIM3-212ENST00000533064 FKBP8Q14318 412 aa18.29■□□□□ 0.52
TRIM3-212ENST00000533064 VAMP4O75379 141 aa18.28■□□□□ 0.52
TRIM3-212ENST00000533064 KRT24Q2M2I5 525 aa18.28■□□□□ 0.52
TRIM3-212ENST00000533064 HOXB7P09629 217 aa18.28■□□□□ 0.52
TRIM3-212ENST00000533064 KCPQ6ZWJ8 1503 aa18.27■□□□□ 0.52
TRIM3-212ENST00000533064 ZNF496Q96IT1 587 aaPredicted RBP18.27■□□□□ 0.52
TRIM3-212ENST00000533064 ASAP1Q9ULH1 1129 aa18.27■□□□□ 0.52
TRIM3-212ENST00000533064 KCNQ2O43526 872 aa18.26■□□□□ 0.51
TRIM3-212ENST00000533064 RARSP54136 660 aaKnown RBP18.26■□□□□ 0.51
TRIM3-212ENST00000533064 ALDH1L2Q3SY69 923 aa18.26■□□□□ 0.51
TRIM3-212ENST00000533064 ATG3Q9NT62 314 aa18.26■□□□□ 0.51
TRIM3-212ENST00000533064 PTCD1O75127 700 aaKnown RBP18.25■□□□□ 0.51
TRIM3-212ENST00000533064 SNRPA1P09661 255 aaKnown RBP18.25■□□□□ 0.51
TRIM3-212ENST00000533064 SMARCC1Q92922 1105 aaPredicted RBP18.25■□□□□ 0.51
TRIM3-212ENST00000533064 RNF123Q5XPI4 1314 aa18.25■□□□□ 0.51
TRIM3-212ENST00000533064 HEG1Q9ULI3 1381 aa18.25■□□□□ 0.51
TRIM3-212ENST00000533064 LY75O60449 1722 aa18.25■□□□□ 0.51
TRIM3-212ENST00000533064 GIGYF1O75420 1035 aaPredicted RBP18.25■□□□□ 0.51
TRIM3-212ENST00000533064 CCDC30Q5VVM6 783 aa18.25■□□□□ 0.51
TRIM3-212ENST00000533064 SMC4Q9NTJ3 1288 aa18.25■□□□□ 0.51
TRIM3-212ENST00000533064 ZNF831Q5JPB2 1677 aa18.24■□□□□ 0.51
TRIM3-212ENST00000533064 HDGFL1Q5TGJ6 251 aa18.24■□□□□ 0.51
TRIM3-212ENST00000533064 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.24■□□□□ 0.51
TRIM3-212ENST00000533064 RBM42Q9BTD8 480 aaKnown RBP18.24■□□□□ 0.51
TRIM3-212ENST00000533064 STK31Q9BXU1 1019 aa18.24■□□□□ 0.51
TRIM3-212ENST00000533064 EIF2S2P20042 333 aaKnown RBP18.22■□□□□ 0.51
TRIM3-212ENST00000533064 SSH1Q8WYL5 1049 aa18.22■□□□□ 0.51
TRIM3-212ENST00000533064 BCL2L13Q9BXK5 485 aa18.22■□□□□ 0.51
TRIM3-212ENST00000533064 BCL11BQ9C0K0 894 aaPredicted RBP18.22■□□□□ 0.51
TRIM3-212ENST00000533064 TJP1Q07157 1748 aa18.22■□□□□ 0.51
TRIM3-212ENST00000533064 BCAR3O75815 825 aa18.22■□□□□ 0.51
TRIM3-212ENST00000533064 VSIG10Q8N0Z9 540 aa18.22■□□□□ 0.51
TRIM3-212ENST00000533064 TEX13AQ9BXU3 409 aaPredicted RBP18.22■□□□□ 0.51
TRIM3-212ENST00000533064 TAF1LQ8IZX4 1826 aa18.21■□□□□ 0.51
TRIM3-212ENST00000533064 PALLDQ8WX93 1383 aa18.21■□□□□ 0.51
TRIM3-212ENST00000533064 CICQ96RK0 1608 aaPredicted RBP18.21■□□□□ 0.51
TRIM3-212ENST00000533064 CANXP27824 592 aaKnown RBP18.21■□□□□ 0.51
TRIM3-212ENST00000533064 ERICH6BQ5W0A0 696 aa18.21■□□□□ 0.51
TRIM3-212ENST00000533064 NECTIN2Q92692 538 aa18.21■□□□□ 0.51
TRIM3-212ENST00000533064 KIF16BQ96L93 1317 aa18.2■□□□□ 0.5
TRIM3-212ENST00000533064 COL5A3P25940 1745 aaPredicted RBP18.2■□□□□ 0.5
TRIM3-212ENST00000533064 TRIM37O94972 964 aa18.19■□□□□ 0.5
TRIM3-212ENST00000533064 PRAMEF22A3QJZ6 481 aa18.18■□□□□ 0.5
TRIM3-212ENST00000533064 TCERG1O14776 1098 aaKnown RBP18.18■□□□□ 0.5
TRIM3-212ENST00000533064 RRP1P56182 461 aaKnown RBP18.18■□□□□ 0.5
TRIM3-212ENST00000533064 FRAT1Q92837 279 aaPredicted RBP18.18■□□□□ 0.5
TRIM3-212ENST00000533064 TNS1Q9HBL0 1735 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms