RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 AMIGO3Q86WK7 504 aa24.26■■□□□ 1.47
PCF11-206ENST00000533018 AEBP1Q8IUX7 1158 aa24.26■■□□□ 1.47
PCF11-206ENST00000533018 ZNF784Q8NCA9 323 aaPredicted RBP24.26■■□□□ 1.47
PCF11-206ENST00000533018 DCAF5Q96JK2 942 aa24.26■■□□□ 1.47
PCF11-206ENST00000533018 PLEKHG2Q9H7P9 1386 aa24.26■■□□□ 1.47
PCF11-206ENST00000533018 ERVV-2B6SEH9 535 aa24.25■■□□□ 1.47
PCF11-206ENST00000533018 C1orf141Q5JVX7 400 aa24.25■■□□□ 1.47
PCF11-206ENST00000533018 RBM42Q9BTD8 480 aaKnown RBP24.25■■□□□ 1.47
PCF11-206ENST00000533018 GNPATO15228 680 aa24.24■■□□□ 1.47
PCF11-206ENST00000533018 SSFA2P28290 1259 aa24.24■■□□□ 1.47
PCF11-206ENST00000533018 ITPK1Q13572 414 aa24.24■■□□□ 1.47
PCF11-206ENST00000533018 MTHFSP49914 203 aa24.23■■□□□ 1.47
PCF11-206ENST00000533018 CABP4P57796 275 aa24.23■■□□□ 1.47
PCF11-206ENST00000533018 AMER1Q5JTC6 1135 aaPredicted RBP24.23■■□□□ 1.47
PCF11-206ENST00000533018 IL13P35225 146 aa24.2■■□□□ 1.46
PCF11-206ENST00000533018 CNGB1Q14028 1251 aaPredicted RBP24.2■■□□□ 1.46
PCF11-206ENST00000533018 CD2APQ9Y5K6 639 aa24.2■■□□□ 1.46
PCF11-206ENST00000533018 CC2D1BQ5T0F9 858 aaKnown RBP24.19■■□□□ 1.46
PCF11-206ENST00000533018 GRIN3BO60391 1043 aa24.18■■□□□ 1.46
PCF11-206ENST00000533018 KDM6AO15550 1401 aaPredicted RBP24.18■■□□□ 1.46
PCF11-206ENST00000533018 YBX3P16989 372 aaKnown RBP eCLIP24.17■■□□□ 1.46
PCF11-206ENST00000533018 RTCBQ9Y3I0 505 aaKnown RBP24.17■■□□□ 1.46
PCF11-206ENST00000533018 TRAPPC3LQ5T215 181 aa24.16■■□□□ 1.46
PCF11-206ENST00000533018 NFATC2IPQ8NCF5 419 aa24.16■■□□□ 1.46
PCF11-206ENST00000533018 PTCD1O75127 700 aaKnown RBP24.15■■□□□ 1.46
PCF11-206ENST00000533018 SLC4A9Q96Q91 983 aa24.15■■□□□ 1.46
PCF11-206ENST00000533018 KDRP35968 1356 aa24.15■■□□□ 1.46
PCF11-206ENST00000533018 HMOX1P09601 288 aa24.14■■□□□ 1.45
PCF11-206ENST00000533018 PER1O15534 1290 aaPredicted RBP24.13■■□□□ 1.45
PCF11-206ENST00000533018 WWC3Q9ULE0 1092 aa24.13■■□□□ 1.45
PCF11-206ENST00000533018 ZNF831Q5JPB2 1677 aa24.11■■□□□ 1.45
PCF11-206ENST00000533018 AKAP4Q5JQC9 854 aa24.11■■□□□ 1.45
PCF11-206ENST00000533018 DIAPH1O60610 1272 aaKnown RBP24.1■■□□□ 1.45
PCF11-206ENST00000533018 MMP10P09238 476 aa24.1■■□□□ 1.45
PCF11-206ENST00000533018 RFC4P35249 363 aa24.1■■□□□ 1.45
PCF11-206ENST00000533018 RC3H1Q5TC82 1133 aaKnown RBP24.1■■□□□ 1.45
PCF11-206ENST00000533018 SCN11AQ9UI33 1791 aa24.1■■□□□ 1.45
PCF11-206ENST00000533018 COL5A3P25940 1745 aaPredicted RBP24.1■■□□□ 1.45
PCF11-206ENST00000533018 ARHGEF1Q92888 912 aaKnown RBP24.09■■□□□ 1.45
PCF11-206ENST00000533018 CNTNAP4Q9C0A0 1308 aa24.09■■□□□ 1.45
PCF11-206ENST00000533018 ADRA2BP18089 450 aa24.08■■□□□ 1.45
PCF11-206ENST00000533018 RPS6KA4O75676 772 aa24.07■■□□□ 1.44
PCF11-206ENST00000533018 NLGN1Q8N2Q7 840 aa24.07■■□□□ 1.44
PCF11-206ENST00000533018 LGR6Q9HBX8 967 aa24.07■■□□□ 1.44
PCF11-206ENST00000533018 MYH14Q7Z406 1995 aaKnown RBP24.07■■□□□ 1.44
PCF11-206ENST00000533018 VIRMAQ69YN4 1812 aaKnown RBP24.05■■□□□ 1.44
PCF11-206ENST00000533018 SLC52A2Q9HAB3 445 aa24.05■■□□□ 1.44
PCF11-206ENST00000533018 U2SURPO15042 1029 aaKnown RBP24.04■■□□□ 1.44
PCF11-206ENST00000533018 CRKLP46109 303 aaKnown RBP24.04■■□□□ 1.44
PCF11-206ENST00000533018 RNMTO43148 476 aaKnown RBP24.03■■□□□ 1.44
PCF11-206ENST00000533018 MTHFSDQ2M296 383 aaKnown RBP24.03■■□□□ 1.44
PCF11-206ENST00000533018 GIGYF1O75420 1035 aaPredicted RBP24.02■■□□□ 1.44
PCF11-206ENST00000533018 GYS1P13807 737 aa24.02■■□□□ 1.44
PCF11-206ENST00000533018 SLC39A6Q13433 755 aa24.01■■□□□ 1.43
PCF11-206ENST00000533018 PARP3Q9Y6F1 533 aa24.01■■□□□ 1.43
PCF11-206ENST00000533018 CICQ96RK0 1608 aaPredicted RBP24.01■■□□□ 1.43
PCF11-206ENST00000533018 C1QTNF8P60827 252 aa24■■□□□ 1.43
PCF11-206ENST00000533018 C4AP0C0L4 1744 aa24■■□□□ 1.43
PCF11-206ENST00000533018 NPC1L1Q9UHC9 1359 aa24■■□□□ 1.43
PCF11-206ENST00000533018 TJP1Q07157 1748 aa23.99■■□□□ 1.43
PCF11-206ENST00000533018 CCDC87Q9NVE4 849 aa23.99■■□□□ 1.43
PCF11-206ENST00000533018 N4BP2Q86UW6 1770 aaPredicted RBP23.98■■□□□ 1.43
PCF11-206ENST00000533018 DNAJC10Q8IXB1 793 aa23.98■■□□□ 1.43
PCF11-206ENST00000533018 SRP68Q9UHB9 627 aaKnown RBP23.98■■□□□ 1.43
PCF11-206ENST00000533018 TGFB2P61812 414 aa23.97■■□□□ 1.43
PCF11-206ENST00000533018 KIF13BQ9NQT8 1826 aa23.96■■□□□ 1.43
PCF11-206ENST00000533018 A0A0G2JLW4 131 aa23.96■■□□□ 1.43
PCF11-206ENST00000533018 INTS5Q6P9B9 1019 aaKnown RBP23.96■■□□□ 1.43
PCF11-206ENST00000533018 ATP10DQ9P241 1426 aa23.95■■□□□ 1.42
PCF11-206ENST00000533018 SENP3-EIF4A1A0A087X0R7 540 aa23.95■■□□□ 1.42
PCF11-206ENST00000533018 PXDNLA1KZ92 1463 aa23.94■■□□□ 1.42
PCF11-206ENST00000533018 MRC1P22897 1456 aa23.94■■□□□ 1.42
PCF11-206ENST00000533018 USP42Q9H9J4 1324 aaKnown RBP23.94■■□□□ 1.42
PCF11-206ENST00000533018 ZPR1O75312 459 aa23.94■■□□□ 1.42
PCF11-206ENST00000533018 ZNF526Q8TF50 670 aaPredicted RBP23.94■■□□□ 1.42
PCF11-206ENST00000533018 CFAP53Q96M91 514 aa23.94■■□□□ 1.42
PCF11-206ENST00000533018 BCS1LQ9Y276 419 aa23.94■■□□□ 1.42
PCF11-206ENST00000533018 COL3A1P02461 1466 aaPredicted RBP23.94■■□□□ 1.42
PCF11-206ENST00000533018 FKBP8Q14318 412 aa23.93■■□□□ 1.42
PCF11-206ENST00000533018 TTC5Q8N0Z6 440 aa23.93■■□□□ 1.42
PCF11-206ENST00000533018 C10orf71Q711Q0 1435 aa23.93■■□□□ 1.42
PCF11-206ENST00000533018 GAS2L2Q8NHY3 880 aa23.92■■□□□ 1.42
PCF11-206ENST00000533018 GPBP1L1Q9HC44 474 aaPredicted RBP23.92■■□□□ 1.42
PCF11-206ENST00000533018 GNAT3A8MTJ3 354 aa23.91■■□□□ 1.42
PCF11-206ENST00000533018 CYP19A1P11511 503 aaPredicted RBP23.91■■□□□ 1.42
PCF11-206ENST00000533018 DPEP1P16444 411 aa23.91■■□□□ 1.42
PCF11-206ENST00000533018 TEFQ10587 303 aa23.91■■□□□ 1.42
PCF11-206ENST00000533018 USPL1Q5W0Q7 1092 aa23.91■■□□□ 1.42
PCF11-206ENST00000533018 KIAA1551Q9HCM1 1747 aa23.9■■□□□ 1.42
PCF11-206ENST00000533018 KCPQ6ZWJ8 1503 aa23.89■■□□□ 1.42
PCF11-206ENST00000533018 ADAMTS7Q9UKP4 1686 aa23.89■■□□□ 1.42
PCF11-206ENST00000533018 SOS1Q07889 1333 aaPredicted RBP23.88■■□□□ 1.41
PCF11-206ENST00000533018 FCHSD2O94868 740 aa23.88■■□□□ 1.41
PCF11-206ENST00000533018 VSIG10Q8N0Z9 540 aa23.88■■□□□ 1.41
PCF11-206ENST00000533018 NUDCQ9Y266 331 aa23.88■■□□□ 1.41
PCF11-206ENST00000533018 ZBTB1Q9Y2K1 713 aa23.88■■□□□ 1.41
PCF11-206ENST00000533018 CANXP27824 592 aaKnown RBP23.87■■□□□ 1.41
PCF11-206ENST00000533018 DDR1Q08345 913 aa23.87■■□□□ 1.41
PCF11-206ENST00000533018 ARHGAP27Q6ZUM4 889 aa23.87■■□□□ 1.41
PCF11-206ENST00000533018 IL17REQ8NFR9 667 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms