RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 CTSOP43234 321 aaPredicted RBP9.31□□□□□ -0.92
CD44-231ENST00000531110 MTFR1Q15390 333 aa9.31□□□□□ -0.92
CD44-231ENST00000531110 CRTC2Q53ET0 693 aaPredicted RBP9.31□□□□□ -0.92
CD44-231ENST00000531110 WDR44Q5JSH3 913 aa9.31□□□□□ -0.92
CD44-231ENST00000531110 FOXD4L5Q5VV16 416 aaPredicted RBP9.31□□□□□ -0.92
CD44-231ENST00000531110 TPCN2Q8NHX9 752 aa9.31□□□□□ -0.92
CD44-231ENST00000531110 RNF217Q8TC41 542 aa9.31□□□□□ -0.92
CD44-231ENST00000531110 GRIP2Q9C0E4 1043 aa9.31□□□□□ -0.92
CD44-231ENST00000531110 POLMQ9NP87 494 aaPredicted RBP9.31□□□□□ -0.92
CD44-231ENST00000531110 KIAA1024Q9UPX6 916 aa9.31□□□□□ -0.92
CD44-231ENST00000531110 RBM19Q9Y4C8 960 aaKnown RBP9.31□□□□□ -0.92
CD44-231ENST00000531110 SPATA31C2B4DYI2 1134 aa9.3□□□□□ -0.92
CD44-231ENST00000531110 MEN1O00255 615 aa9.3□□□□□ -0.92
CD44-231ENST00000531110 RFX1P22670 979 aa9.3□□□□□ -0.92
CD44-231ENST00000531110 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.3□□□□□ -0.92
CD44-231ENST00000531110 FHDC1Q9C0D6 1143 aaPredicted RBP9.3□□□□□ -0.92
CD44-231ENST00000531110 RAB6BQ9NRW1 208 aa9.3□□□□□ -0.92
CD44-231ENST00000531110 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.29□□□□□ -0.92
CD44-231ENST00000531110 C11orf95C9JLR9 678 aaPredicted RBP9.29□□□□□ -0.92
CD44-231ENST00000531110 SMTNP53814 917 aa9.29□□□□□ -0.92
CD44-231ENST00000531110 SEC13P55735 322 aa9.29□□□□□ -0.92
CD44-231ENST00000531110 CENPCQ03188 943 aa9.29□□□□□ -0.92
CD44-231ENST00000531110 ANKMY2Q8IV38 441 aa9.29□□□□□ -0.92
CD44-231ENST00000531110 ZNF358Q9NW07 568 aa9.29□□□□□ -0.92
CD44-231ENST00000531110 NBPF15Q8N660 670 aa9.28□□□□□ -0.92
CD44-231ENST00000531110 ZNF594Q96JF6 807 aaPredicted RBP9.28□□□□□ -0.92
CD44-231ENST00000531110 ARXQ96QS3 562 aa9.28□□□□□ -0.92
CD44-231ENST00000531110 DNMT3LQ9UJW3 386 aa9.28□□□□□ -0.92
CD44-231ENST00000531110 MAN1A2O60476 641 aa9.27□□□□□ -0.93
CD44-231ENST00000531110 EPHA4P54764 986 aa9.27□□□□□ -0.93
CD44-231ENST00000531110 TLR1Q15399 786 aa9.27□□□□□ -0.93
CD44-231ENST00000531110 LYSMD3Q7Z3D4 306 aa9.27□□□□□ -0.93
CD44-231ENST00000531110 PPARGC1BQ86YN6 1023 aaKnown RBP9.27□□□□□ -0.93
CD44-231ENST00000531110 A6NJY4 79 aa9.26□□□□□ -0.93
CD44-231ENST00000531110 CDK2AP1O14519 115 aa9.26□□□□□ -0.93
CD44-231ENST00000531110 GTF2E1P29083 439 aaPredicted RBP9.26□□□□□ -0.93
CD44-231ENST00000531110 DPYDQ12882 1025 aa9.26□□□□□ -0.93
CD44-231ENST00000531110 SLC27A3Q5K4L6 730 aa9.26□□□□□ -0.93
CD44-231ENST00000531110 ZSCAN10Q96SZ4 725 aaPredicted RBP9.26□□□□□ -0.93
CD44-231ENST00000531110 SNRPBP14678 240 aaKnown RBP9.25□□□□□ -0.93
CD44-231ENST00000531110 SWI5Q1ZZU3 235 aa9.25□□□□□ -0.93
CD44-231ENST00000531110 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.25□□□□□ -0.93
CD44-231ENST00000531110 FAM200AQ8TCP9 573 aa9.25□□□□□ -0.93
CD44-231ENST00000531110 SCHIP1Q9P0W5 487 aaPredicted RBP9.25□□□□□ -0.93
CD44-231ENST00000531110 NOVA2Q9UNW9 492 aaKnown RBP9.25□□□□□ -0.93
CD44-231ENST00000531110 STAU1O95793 577 aaKnown RBP9.24□□□□□ -0.93
CD44-231ENST00000531110 FOXK2Q01167 660 aa9.24□□□□□ -0.93
CD44-231ENST00000531110 ZNF787Q6DD87 383 aa9.24□□□□□ -0.93
CD44-231ENST00000531110 GAS2L2Q8NHY3 880 aa9.24□□□□□ -0.93
CD44-231ENST00000531110 RHBDD1Q8TEB9 315 aa9.24□□□□□ -0.93
CD44-231ENST00000531110 IQSEC3Q9UPP2 1182 aaPredicted RBP9.24□□□□□ -0.93
CD44-231ENST00000531110 ACIN1Q9UKV3 1341 aaKnown RBP9.24□□□□□ -0.93
CD44-231ENST00000531110 POTECB2RU33 542 aa9.23□□□□□ -0.93
CD44-231ENST00000531110 GNASQ5JWF2 1037 aa9.23□□□□□ -0.93
CD44-231ENST00000531110 TAS1R3Q7RTX0 852 aa9.23□□□□□ -0.93
CD44-231ENST00000531110 NPAS3Q8IXF0 933 aa9.23□□□□□ -0.93
CD44-231ENST00000531110 ZMIZ1Q9ULJ6 1067 aa9.23□□□□□ -0.93
CD44-231ENST00000531110 TMEM214Q6NUQ4 689 aaKnown RBP9.22□□□□□ -0.93
CD44-231ENST00000531110 NBPF10Q6P3W6 841 aaKnown RBP9.22□□□□□ -0.93
CD44-231ENST00000531110 POTEAQ6S8J7 498 aa9.22□□□□□ -0.93
CD44-231ENST00000531110 ZNF295-AS1Q8N0V1 137 aa9.22□□□□□ -0.93
CD44-231ENST00000531110 STAG2Q8N3U4 1231 aa9.22□□□□□ -0.93
CD44-231ENST00000531110 SERTAD1Q9UHV2 236 aa9.22□□□□□ -0.93
CD44-231ENST00000531110 SFI1A8K8P3 1242 aa9.21□□□□□ -0.94
CD44-231ENST00000531110 CDCA8Q53HL2 280 aa9.21□□□□□ -0.94
CD44-231ENST00000531110 NIFKQ9BYG3 293 aaKnown RBP9.21□□□□□ -0.94
CD44-231ENST00000531110 DYRK1BQ9Y463 629 aa9.2□□□□□ -0.94
CD44-231ENST00000531110 FIGNL2A6NMB9 653 aa9.19□□□□□ -0.94
CD44-231ENST00000531110 HIRAP54198 1017 aaPredicted RBP9.19□□□□□ -0.94
CD44-231ENST00000531110 PTSQ03393 145 aa9.19□□□□□ -0.94
CD44-231ENST00000531110 PRICKLE2Q7Z3G6 844 aa9.19□□□□□ -0.94
CD44-231ENST00000531110 TSEN2Q8NCE0 465 aaKnown RBP9.19□□□□□ -0.94
CD44-231ENST00000531110 C1orf216Q8TAB5 229 aa9.19□□□□□ -0.94
CD44-231ENST00000531110 ARID3AQ99856 593 aa9.19□□□□□ -0.94
CD44-231ENST00000531110 USTQ9Y2C2 406 aa9.19□□□□□ -0.94
CD44-231ENST00000531110 A0A1B0GTH6 734 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 SLC35F4A4IF30 521 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 IGFBP4P22692 258 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 PSMA6P60900 246 aaKnown RBP9.18□□□□□ -0.94
CD44-231ENST00000531110 PDE4CQ08493 712 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 FAM69CQ0P6D2 419 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 TEAD4Q15561 434 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 C4orf17Q53FE4 359 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 SLC9A9Q8IVB4 645 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 TNS4Q8IZW8 715 aa9.18□□□□□ -0.94
CD44-231ENST00000531110 SENP3-EIF4A1A0A087X0R7 540 aa9.17□□□□□ -0.94
CD44-231ENST00000531110 POU4F2Q12837 409 aa9.17□□□□□ -0.94
CD44-231ENST00000531110 TMEM164Q5U3C3 297 aa9.17□□□□□ -0.94
CD44-231ENST00000531110 STK32AQ8WU08 396 aa9.17□□□□□ -0.94
CD44-231ENST00000531110 CLP1Q92989 425 aaKnown RBP9.17□□□□□ -0.94
CD44-231ENST00000531110 GMCL1Q96IK5 515 aa9.17□□□□□ -0.94
CD44-231ENST00000531110 SOBPA7XYQ1 873 aa9.16□□□□□ -0.94
CD44-231ENST00000531110 CSB-PGBD3P0DP91 1061 aa9.16□□□□□ -0.94
CD44-231ENST00000531110 WEE1P30291 646 aa9.16□□□□□ -0.94
CD44-231ENST00000531110 TSPAN10Q9H1Z9 355 aaPredicted RBP9.16□□□□□ -0.94
CD44-231ENST00000531110 ZDHHC3Q9NYG2 299 aa9.16□□□□□ -0.94
CD44-231ENST00000531110 NXF1Q9UBU9 619 aaKnown RBP9.16□□□□□ -0.94
CD44-231ENST00000531110 CHMP3Q9Y3E7 222 aa9.16□□□□□ -0.94
CD44-231ENST00000531110 GPC6Q9Y625 555 aaPredicted RBP9.16□□□□□ -0.94
CD44-231ENST00000531110 FOXO3O43524 673 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms