RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 ZNF530Q6P9A1 599 aaPredicted RBP21.53■■□□□ 1.04
CPSF1-205ENST00000531042 GOLGB1Q14789 3259 aaKnown RBP21.53■■□□□ 1.04
CPSF1-205ENST00000531042 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.52■■□□□ 1.04
CPSF1-205ENST00000531042 PHF14O94880 888 aa21.52■■□□□ 1.04
CPSF1-205ENST00000531042 SSFA2P28290 1259 aa21.52■■□□□ 1.04
CPSF1-205ENST00000531042 IL13P35225 146 aa21.52■■□□□ 1.04
CPSF1-205ENST00000531042 SMIM5Q71RC9 77 aa21.52■■□□□ 1.04
CPSF1-205ENST00000531042 SULT6B1Q6IMI4 303 aa21.51■■□□□ 1.03
CPSF1-205ENST00000531042 KDRP35968 1356 aa21.5■■□□□ 1.03
CPSF1-205ENST00000531042 KDM6AO15550 1401 aaPredicted RBP21.5■■□□□ 1.03
CPSF1-205ENST00000531042 PELP1Q8IZL8 1130 aaKnown RBP21.5■■□□□ 1.03
CPSF1-205ENST00000531042 ZNF784Q8NCA9 323 aaPredicted RBP21.5■■□□□ 1.03
CPSF1-205ENST00000531042 ZNF831Q5JPB2 1677 aa21.5■■□□□ 1.03
CPSF1-205ENST00000531042 PER1O15534 1290 aaPredicted RBP21.49■■□□□ 1.03
CPSF1-205ENST00000531042 GNPATO15228 680 aa21.48■■□□□ 1.03
CPSF1-205ENST00000531042 MTHFSP49914 203 aa21.48■■□□□ 1.03
CPSF1-205ENST00000531042 SLC4A9Q96Q91 983 aa21.48■■□□□ 1.03
CPSF1-205ENST00000531042 CD2APQ9Y5K6 639 aa21.48■■□□□ 1.03
CPSF1-205ENST00000531042 CABP4P57796 275 aa21.47■■□□□ 1.03
CPSF1-205ENST00000531042 C1orf141Q5JVX7 400 aa21.47■■□□□ 1.03
CPSF1-205ENST00000531042 RBM42Q9BTD8 480 aaKnown RBP21.46■■□□□ 1.03
CPSF1-205ENST00000531042 YBX3P16989 372 aaKnown RBP eCLIP21.45■■□□□ 1.029e-7■□□□□ 11.2
CPSF1-205ENST00000531042 COL5A3P25940 1745 aaPredicted RBP21.44■■□□□ 1.02
CPSF1-205ENST00000531042 CC2D1BQ5T0F9 858 aaKnown RBP21.44■■□□□ 1.02
CPSF1-205ENST00000531042 GRIN3BO60391 1043 aa21.43■■□□□ 1.02
CPSF1-205ENST00000531042 SCN11AQ9UI33 1791 aa21.43■■□□□ 1.02
CPSF1-205ENST00000531042 RC3H1Q5TC82 1133 aaKnown RBP21.42■■□□□ 1.02
CPSF1-205ENST00000531042 NFATC2IPQ8NCF5 419 aa21.42■■□□□ 1.02
CPSF1-205ENST00000531042 RTCBQ9Y3I0 505 aaKnown RBP21.42■■□□□ 1.02
CPSF1-205ENST00000531042 CNTNAP4Q9C0A0 1308 aa21.41■■□□□ 1.02
CPSF1-205ENST00000531042 TRAPPC3LQ5T215 181 aa21.41■■□□□ 1.02
CPSF1-205ENST00000531042 AKAP4Q5JQC9 854 aa21.4■■□□□ 1.02
CPSF1-205ENST00000531042 NPC1L1Q9UHC9 1359 aa21.39■■□□□ 1.02
CPSF1-205ENST00000531042 DIAPH1O60610 1272 aaKnown RBP21.39■■□□□ 1.01
CPSF1-205ENST00000531042 PTCD1O75127 700 aaKnown RBP21.39■■□□□ 1.01
CPSF1-205ENST00000531042 HMOX1P09601 288 aa21.39■■□□□ 1.01
CPSF1-205ENST00000531042 MYH14Q7Z406 1995 aaKnown RBP21.38■■□□□ 1.01
CPSF1-205ENST00000531042 RPS6KA4O75676 772 aa21.38■■□□□ 1.01
CPSF1-205ENST00000531042 ADRA2BP18089 450 aa21.38■■□□□ 1.01
CPSF1-205ENST00000531042 ARHGEF1Q92888 912 aaKnown RBP21.37■■□□□ 1.01
CPSF1-205ENST00000531042 MMP10P09238 476 aa21.36■■□□□ 1.01
CPSF1-205ENST00000531042 LGR6Q9HBX8 967 aa21.36■■□□□ 1.01
CPSF1-205ENST00000531042 CICQ96RK0 1608 aaPredicted RBP21.36■■□□□ 1.01
CPSF1-205ENST00000531042 VIRMAQ69YN4 1812 aaKnown RBP21.36■■□□□ 1.01
CPSF1-205ENST00000531042 TJP1Q07157 1748 aa21.35■■□□□ 1.01
CPSF1-205ENST00000531042 NLGN1Q8N2Q7 840 aa21.35■■□□□ 1.01
CPSF1-205ENST00000531042 SLC52A2Q9HAB3 445 aa21.35■■□□□ 1.01
CPSF1-205ENST00000531042 RNMTO43148 476 aaKnown RBP21.34■■□□□ 1.01
CPSF1-205ENST00000531042 CRKLP46109 303 aaKnown RBP21.34■■□□□ 1.01
CPSF1-205ENST00000531042 MTHFSDQ2M296 383 aaKnown RBP21.34■■□□□ 1.01
CPSF1-205ENST00000531042 C4AP0C0L4 1744 aa21.34■■□□□ 1.01
CPSF1-205ENST00000531042 COL3A1P02461 1466 aaPredicted RBP21.33■■□□□ 1.01
CPSF1-205ENST00000531042 GYS1P13807 737 aa21.33■■□□□ 1.01
CPSF1-205ENST00000531042 RFC4P35249 363 aa21.33■■□□□ 1.01
CPSF1-205ENST00000531042 CNGB1Q14028 1251 aaPredicted RBP21.33■■□□□ 1.01
CPSF1-205ENST00000531042 MRC1P22897 1456 aa21.32■■□□□ 1
CPSF1-205ENST00000531042 KIF13BQ9NQT8 1826 aa21.32■■□□□ 1
CPSF1-205ENST00000531042 ADAMTS7Q9UKP4 1686 aa21.32■■□□□ 1
CPSF1-205ENST00000531042 WWC3Q9ULE0 1092 aa21.3■■□□□ 1
CPSF1-205ENST00000531042 KIAA1551Q9HCM1 1747 aa21.29■■□□□ 1
CPSF1-205ENST00000531042 U2SURPO15042 1029 aaKnown RBP21.28■■□□□ 1
CPSF1-205ENST00000531042 SLC39A6Q13433 755 aa21.28■■□□□ 1
CPSF1-205ENST00000531042 INTS5Q6P9B9 1019 aaKnown RBP21.28■■□□□ 1
CPSF1-205ENST00000531042 C10orf71Q711Q0 1435 aa21.28■■□□□ 1
CPSF1-205ENST00000531042 PXDNLA1KZ92 1463 aa21.27■■□□□ 1
CPSF1-205ENST00000531042 C1QTNF8P60827 252 aa21.27■■□□□ 1
CPSF1-205ENST00000531042 DNAJC10Q8IXB1 793 aa21.27■■□□□ 1
CPSF1-205ENST00000531042 KCPQ6ZWJ8 1503 aa21.27■■□□□ 1
CPSF1-205ENST00000531042 N4BP2Q86UW6 1770 aaPredicted RBP21.27■■□□□ 1
CPSF1-205ENST00000531042 TGFB2P61812 414 aa21.26■□□□□ 0.99
CPSF1-205ENST00000531042 CCDC87Q9NVE4 849 aa21.26■□□□□ 0.99
CPSF1-205ENST00000531042 SRP68Q9UHB9 627 aaKnown RBP21.26■□□□□ 0.99
CPSF1-205ENST00000531042 PARP3Q9Y6F1 533 aa21.26■□□□□ 0.99
CPSF1-205ENST00000531042 USP42Q9H9J4 1324 aaKnown RBP21.26■□□□□ 0.99
CPSF1-205ENST00000531042 ATP10DQ9P241 1426 aa21.24■□□□□ 0.99
CPSF1-205ENST00000531042 GIGYF1O75420 1035 aaPredicted RBP21.24■□□□□ 0.99
CPSF1-205ENST00000531042 CYP19A1P11511 503 aaPredicted RBP21.24■□□□□ 0.99
CPSF1-205ENST00000531042 FKBP8Q14318 412 aa21.24■□□□□ 0.99
CPSF1-205ENST00000531042 UBR2Q8IWV8 1755 aa21.23■□□□□ 0.99
CPSF1-205ENST00000531042 A0A0G2JLW4 131 aa21.23■□□□□ 0.99
CPSF1-205ENST00000531042 GAS2L2Q8NHY3 880 aa21.23■□□□□ 0.99
CPSF1-205ENST00000531042 ADCY9O60503 1353 aa21.23■□□□□ 0.99
CPSF1-205ENST00000531042 VSIG10Q8N0Z9 540 aa21.22■□□□□ 0.99
CPSF1-205ENST00000531042 SOS1Q07889 1333 aaPredicted RBP21.22■□□□□ 0.99
CPSF1-205ENST00000531042 GNAT3A8MTJ3 354 aa21.21■□□□□ 0.99
CPSF1-205ENST00000531042 IL17REQ8NFR9 667 aa21.21■□□□□ 0.99
CPSF1-205ENST00000531042 CFAP53Q96M91 514 aa21.21■□□□□ 0.99
CPSF1-205ENST00000531042 DPEP1P16444 411 aa21.2■□□□□ 0.98
CPSF1-205ENST00000531042 DDR1Q08345 913 aa21.2■□□□□ 0.98
CPSF1-205ENST00000531042 BRCA1P38398 1863 aaKnown RBP21.2■□□□□ 0.98
CPSF1-205ENST00000531042 SIPA1L3O60292 1781 aaPredicted RBP21.19■□□□□ 0.98
CPSF1-205ENST00000531042 ZPR1O75312 459 aa21.19■□□□□ 0.98
CPSF1-205ENST00000531042 TM4SF1P30408 202 aa21.19■□□□□ 0.98
CPSF1-205ENST00000531042 USPL1Q5W0Q7 1092 aa21.19■□□□□ 0.98
CPSF1-205ENST00000531042 BCS1LQ9Y276 419 aa21.19■□□□□ 0.98
CPSF1-205ENST00000531042 ZBTB1Q9Y2K1 713 aa21.19■□□□□ 0.98
CPSF1-205ENST00000531042 TEFQ10587 303 aa21.18■□□□□ 0.98
CPSF1-205ENST00000531042 TTC5Q8N0Z6 440 aa21.18■□□□□ 0.98
CPSF1-205ENST00000531042 RSPH6AQ9H0K4 717 aa21.18■□□□□ 0.98
CPSF1-205ENST00000531042 SENP3-EIF4A1A0A087X0R7 540 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms