RNA–Protein interactions for RNA: ENST00000530618.1

SSBP3-213, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 524 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-213ENST00000530618 KDRP35968 1356 aa6.44□□□□□ -1.38
SSBP3-213ENST00000530618 AMPHP49418 695 aa6.43□□□□□ -1.38
SSBP3-213ENST00000530618 NKX1-1Q15270 411 aaPredicted RBP6.43□□□□□ -1.38
SSBP3-213ENST00000530618 PIP4P2Q8N4L2 257 aa6.43□□□□□ -1.38
SSBP3-213ENST00000530618 ARFGEF1Q9Y6D6 1849 aa6.43□□□□□ -1.38
SSBP3-213ENST00000530618 PALLDQ8WX93 1383 aa6.43□□□□□ -1.38
SSBP3-213ENST00000530618 SMIM5Q71RC9 77 aa6.42□□□□□ -1.38
SSBP3-213ENST00000530618 RBM42Q9BTD8 480 aaKnown RBP6.42□□□□□ -1.38
SSBP3-213ENST00000530618 SPINK5Q9NQ38 1064 aaPredicted RBP6.42□□□□□ -1.38
SSBP3-213ENST00000530618 CCNL1Q9UK58 526 aaPredicted RBP6.42□□□□□ -1.38
SSBP3-213ENST00000530618 PCDH11XQ9BZA7 1347 aa6.42□□□□□ -1.38
SSBP3-213ENST00000530618 PCDH11YQ9BZA8 1340 aa6.42□□□□□ -1.38
SSBP3-213ENST00000530618 SBF1O95248 1867 aa6.41□□□□□ -1.38
SSBP3-213ENST00000530618 CC2D1BQ5T0F9 858 aaKnown RBP6.41□□□□□ -1.38
SSBP3-213ENST00000530618 PIGBQ92521 554 aa6.41□□□□□ -1.38
SSBP3-213ENST00000530618 SYTL4Q96C24 671 aaPredicted RBP6.41□□□□□ -1.38
SSBP3-213ENST00000530618 SLC4A9Q96Q91 983 aa6.41□□□□□ -1.38
SSBP3-213ENST00000530618 POLKQ9UBT6 870 aa6.41□□□□□ -1.38
SSBP3-213ENST00000530618 PLEKHG2Q9H7P9 1386 aa6.41□□□□□ -1.38
SSBP3-213ENST00000530618 SIPA1L3O60292 1781 aaPredicted RBP6.41□□□□□ -1.38
SSBP3-213ENST00000530618 UBR2Q8IWV8 1755 aa6.41□□□□□ -1.38
SSBP3-213ENST00000530618 AFDNP55196 1824 aaKnown RBP6.41□□□□□ -1.38
SSBP3-213ENST00000530618 KDM6AO15550 1401 aaPredicted RBP6.41□□□□□ -1.38
SSBP3-213ENST00000530618 NRXN2Q9P2S2 1712 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 DLEC1Q9Y238 1755 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 NEFMP07197 916 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 TATP17735 454 aaPredicted RBP6.4□□□□□ -1.38
SSBP3-213ENST00000530618 C1QTNF8P60827 252 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 ITPK1Q13572 414 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 CNGB1Q14028 1251 aaPredicted RBP6.4□□□□□ -1.38
SSBP3-213ENST00000530618 AMER1Q5JTC6 1135 aaPredicted RBP6.4□□□□□ -1.38
SSBP3-213ENST00000530618 MSL1Q68DK7 614 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 LINC00116Q8NCU8 138 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 EYA1Q99502 592 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 PNNQ9H307 717 aaKnown RBP6.4□□□□□ -1.38
SSBP3-213ENST00000530618 TFCP2L1Q9NZI6 479 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 NUDCQ9Y266 331 aa6.4□□□□□ -1.38
SSBP3-213ENST00000530618 MYBBP1AQ9BQG0 1328 aaKnown RBP6.4□□□□□ -1.39
SSBP3-213ENST00000530618 PER1O15534 1290 aaPredicted RBP6.39□□□□□ -1.39
SSBP3-213ENST00000530618 CAPN15O75808 1086 aa6.39□□□□□ -1.39
SSBP3-213ENST00000530618 RAPGEF4Q8WZA2 1011 aa6.39□□□□□ -1.39
SSBP3-213ENST00000530618 IGSF1Q8N6C5 1336 aa6.39□□□□□ -1.39
SSBP3-213ENST00000530618 ATP10DQ9P241 1426 aa6.39□□□□□ -1.39
SSBP3-213ENST00000530618 PXDNLA1KZ92 1463 aa6.39□□□□□ -1.39
SSBP3-213ENST00000530618 MRC1P22897 1456 aa6.39□□□□□ -1.39
SSBP3-213ENST00000530618 PPM1GO15355 546 aaPredicted RBP6.38□□□□□ -1.39
SSBP3-213ENST00000530618 PHKG2P15735 406 aa6.38□□□□□ -1.39
SSBP3-213ENST00000530618 POLD1P28340 1107 aa6.38□□□□□ -1.39
SSBP3-213ENST00000530618 TNNT2P45379 298 aaPredicted RBP6.38□□□□□ -1.39
SSBP3-213ENST00000530618 EIF4A2Q14240 407 aaKnown RBP6.38□□□□□ -1.39
SSBP3-213ENST00000530618 WDR43Q15061 677 aaKnown RBP eCLIP6.38□□□□□ -1.39
SSBP3-213ENST00000530618 MPRIPQ6WCQ1 1025 aa6.38□□□□□ -1.39
SSBP3-213ENST00000530618 PRKRIP1Q9H875 184 aaPredicted RBP6.38□□□□□ -1.39
SSBP3-213ENST00000530618 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.38□□□□□ -1.39
SSBP3-213ENST00000530618 ASAP1Q9ULH1 1129 aa6.38□□□□□ -1.39
SSBP3-213ENST00000530618 C10orf71Q711Q0 1435 aa6.38□□□□□ -1.39
SSBP3-213ENST00000530618 CCDC88AQ3V6T2 1871 aa6.37□□□□□ -1.39
SSBP3-213ENST00000530618 ANKRD31Q8N7Z5 1873 aa6.37□□□□□ -1.39
SSBP3-213ENST00000530618 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.37□□□□□ -1.39
SSBP3-213ENST00000530618 LOC102724428A0A0B4J2F2 783 aa6.37□□□□□ -1.39
SSBP3-213ENST00000530618 SIK1P57059 783 aa6.37□□□□□ -1.39
SSBP3-213ENST00000530618 GPR162Q16538 588 aa6.37□□□□□ -1.39
SSBP3-213ENST00000530618 ATG3Q9NT62 314 aa6.37□□□□□ -1.39
SSBP3-213ENST00000530618 CD2APQ9Y5K6 639 aa6.37□□□□□ -1.39
SSBP3-213ENST00000530618 KCPQ6ZWJ8 1503 aa6.36□□□□□ -1.39
SSBP3-213ENST00000530618 COL3A1P02461 1466 aaPredicted RBP6.36□□□□□ -1.39
SSBP3-213ENST00000530618 CCER2I3L3R5 266 aa6.36□□□□□ -1.39
SSBP3-213ENST00000530618 SSFA2P28290 1259 aa6.36□□□□□ -1.39
SSBP3-213ENST00000530618 KLHL34Q8N239 644 aa6.36□□□□□ -1.39
SSBP3-213ENST00000530618 SMARCC1Q92922 1105 aaPredicted RBP6.36□□□□□ -1.39
SSBP3-213ENST00000530618 COL11A2P13942 1736 aaPredicted RBP6.36□□□□□ -1.39
SSBP3-213ENST00000530618 DIAPH1O60610 1272 aaKnown RBP6.35□□□□□ -1.39
SSBP3-213ENST00000530618 AEBP1Q8IUX7 1158 aa6.35□□□□□ -1.39
SSBP3-213ENST00000530618 FLAD1Q8NFF5 587 aa6.35□□□□□ -1.39
SSBP3-213ENST00000530618 MRS2Q9HD23 443 aa6.35□□□□□ -1.39
SSBP3-213ENST00000530618 SCN7AQ01118 1682 aa6.35□□□□□ -1.39
SSBP3-213ENST00000530618 BCORQ6W2J9 1755 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 WDR90Q96KV7 1748 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 CNTNAP4Q9C0A0 1308 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 SENP3-EIF4A1A0A087X0R7 540 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 GRIN3BO60391 1043 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 GIGYF1O75420 1035 aaPredicted RBP6.34□□□□□ -1.39
SSBP3-213ENST00000530618 PHF14O94880 888 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 PPP2R1AP30153 589 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 MTHFSP49914 203 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 IFNL2Q8IZJ0 200 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 AK7Q96M32 723 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 SPG7Q9UQ90 795 aa6.34□□□□□ -1.39
SSBP3-213ENST00000530618 DICER1Q9UPY3 1922 aaKnown RBP6.34□□□□□ -1.39
SSBP3-213ENST00000530618 TIAM2Q8IVF5 1701 aa6.33□□□□□ -1.4
SSBP3-213ENST00000530618 MAPK8IP3Q9UPT6 1336 aa6.33□□□□□ -1.4
SSBP3-213ENST00000530618 CACNA1SQ13698 1873 aa6.33□□□□□ -1.4
SSBP3-213ENST00000530618 KIF3CO14782 793 aa6.33□□□□□ -1.4
SSBP3-213ENST00000530618 GNPATO15228 680 aa6.33□□□□□ -1.4
SSBP3-213ENST00000530618 GYS1P13807 737 aa6.33□□□□□ -1.4
SSBP3-213ENST00000530618 KCNA3P22001 575 aa6.33□□□□□ -1.4
SSBP3-213ENST00000530618 RC3H1Q5TC82 1133 aaKnown RBP6.33□□□□□ -1.4
SSBP3-213ENST00000530618 PELP1Q8IZL8 1130 aaKnown RBP6.33□□□□□ -1.4
SSBP3-213ENST00000530618 TMOD3Q9NYL9 352 aa6.33□□□□□ -1.4
SSBP3-213ENST00000530618 ARFGEF2Q9Y6D5 1785 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms