RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 RBM42Q9BTD8 480 aaKnown RBP16.62■□□□□ 0.25
USH1C-208ENST00000529563 WWC3Q9ULE0 1092 aa16.62■□□□□ 0.25
USH1C-208ENST00000529563 ZNF530Q6P9A1 599 aaPredicted RBP16.6■□□□□ 0.25
USH1C-208ENST00000529563 CABP4P57796 275 aa16.59■□□□□ 0.25
USH1C-208ENST00000529563 C1orf141Q5JVX7 400 aa16.59■□□□□ 0.25
USH1C-208ENST00000529563 AMIGO3Q86WK7 504 aa16.59■□□□□ 0.25
USH1C-208ENST00000529563 ATG3Q9NT62 314 aa16.59■□□□□ 0.25
USH1C-208ENST00000529563 RTCBQ9Y3I0 505 aaKnown RBP16.59■□□□□ 0.25
USH1C-208ENST00000529563 IGSF1Q8N6C5 1336 aa16.59■□□□□ 0.25
USH1C-208ENST00000529563 ERVV-2B6SEH9 535 aa16.58■□□□□ 0.24
USH1C-208ENST00000529563 ITPK1Q13572 414 aa16.58■□□□□ 0.24
USH1C-208ENST00000529563 AMOTQ4VCS5 1084 aa16.58■□□□□ 0.24
USH1C-208ENST00000529563 TRAPPC3LQ5T215 181 aa16.58■□□□□ 0.24
USH1C-208ENST00000529563 DCAF5Q96JK2 942 aa16.58■□□□□ 0.24
USH1C-208ENST00000529563 KNSTRNQ9Y448 316 aa16.58■□□□□ 0.24
USH1C-208ENST00000529563 UBR3Q6ZT12 1888 aa16.57■□□□□ 0.24
USH1C-208ENST00000529563 GOLGB1Q14789 3259 aaKnown RBP16.56■□□□□ 0.24
USH1C-208ENST00000529563 PLEKHG2Q9H7P9 1386 aa16.56■□□□□ 0.24
USH1C-208ENST00000529563 MMP10P09238 476 aa16.56■□□□□ 0.24
USH1C-208ENST00000529563 MTHFSP49914 203 aa16.56■□□□□ 0.24
USH1C-208ENST00000529563 ZNF526Q8TF50 670 aaPredicted RBP16.56■□□□□ 0.24
USH1C-208ENST00000529563 GPBP1L1Q9HC44 474 aaPredicted RBP16.56■□□□□ 0.24
USH1C-208ENST00000529563 ATP10DQ9P241 1426 aa16.55■□□□□ 0.24
USH1C-208ENST00000529563 RFC4P35249 363 aa16.54■□□□□ 0.24
USH1C-208ENST00000529563 SULT6B1Q6IMI4 303 aa16.53■□□□□ 0.24
USH1C-208ENST00000529563 NLGN1Q8N2Q7 840 aa16.53■□□□□ 0.24
USH1C-208ENST00000529563 PTCD1O75127 700 aaKnown RBP16.52■□□□□ 0.24
USH1C-208ENST00000529563 ADRA2BP18089 450 aa16.52■□□□□ 0.24
USH1C-208ENST00000529563 AEBP1Q8IUX7 1158 aa16.52■□□□□ 0.24
USH1C-208ENST00000529563 PARP3Q9Y6F1 533 aa16.52■□□□□ 0.24
USH1C-208ENST00000529563 CCDC87Q9NVE4 849 aa16.51■□□□□ 0.23
USH1C-208ENST00000529563 RC3H1Q5TC82 1133 aaKnown RBP16.5■□□□□ 0.23
USH1C-208ENST00000529563 ARHGEF1Q92888 912 aaKnown RBP16.5■□□□□ 0.23
USH1C-208ENST00000529563 KDRP35968 1356 aa16.5■□□□□ 0.23
USH1C-208ENST00000529563 CNTNAP4Q9C0A0 1308 aa16.49■□□□□ 0.23
USH1C-208ENST00000529563 RPS6KA4O75676 772 aa16.49■□□□□ 0.23
USH1C-208ENST00000529563 NFATC2IPQ8NCF5 419 aa16.49■□□□□ 0.23
USH1C-208ENST00000529563 BCS1LQ9Y276 419 aa16.49■□□□□ 0.23
USH1C-208ENST00000529563 KDM6AO15550 1401 aaPredicted RBP16.48■□□□□ 0.23
USH1C-208ENST00000529563 TGFB2P61812 414 aa16.48■□□□□ 0.23
USH1C-208ENST00000529563 SLC4A9Q96Q91 983 aa16.48■□□□□ 0.23
USH1C-208ENST00000529563 CICQ96RK0 1608 aaPredicted RBP16.48■□□□□ 0.23
USH1C-208ENST00000529563 A0A0G2JLW4 131 aa16.47■□□□□ 0.23
USH1C-208ENST00000529563 CRKLP46109 303 aaKnown RBP16.46■□□□□ 0.23
USH1C-208ENST00000529563 ARHGAP27Q6ZUM4 889 aa16.46■□□□□ 0.23
USH1C-208ENST00000529563 FCHSD2O94868 740 aa16.45■□□□□ 0.22
USH1C-208ENST00000529563 GYS1P13807 737 aa16.45■□□□□ 0.22
USH1C-208ENST00000529563 IL13P35225 146 aa16.45■□□□□ 0.22
USH1C-208ENST00000529563 CNGB1Q14028 1251 aaPredicted RBP16.45■□□□□ 0.22
USH1C-208ENST00000529563 AKAP4Q5JQC9 854 aa16.45■□□□□ 0.22
USH1C-208ENST00000529563 PXDNLA1KZ92 1463 aa16.44■□□□□ 0.22
USH1C-208ENST00000529563 HMOX1P09601 288 aa16.44■□□□□ 0.22
USH1C-208ENST00000529563 ZNF831Q5JPB2 1677 aa16.43■□□□□ 0.22
USH1C-208ENST00000529563 ADCY9O60503 1353 aa16.43■□□□□ 0.22
USH1C-208ENST00000529563 ZPR1O75312 459 aa16.43■□□□□ 0.22
USH1C-208ENST00000529563 DPEP1P16444 411 aa16.43■□□□□ 0.22
USH1C-208ENST00000529563 CC2D1BQ5T0F9 858 aaKnown RBP16.43■□□□□ 0.22
USH1C-208ENST00000529563 C10orf71Q711Q0 1435 aa16.43■□□□□ 0.22
USH1C-208ENST00000529563 COL5A3P25940 1745 aaPredicted RBP16.42■□□□□ 0.22
USH1C-208ENST00000529563 SLC52A2Q9HAB3 445 aa16.42■□□□□ 0.22
USH1C-208ENST00000529563 SRP68Q9UHB9 627 aaKnown RBP16.42■□□□□ 0.22
USH1C-208ENST00000529563 KIF7Q2M1P5 1343 aa16.42■□□□□ 0.22
USH1C-208ENST00000529563 C4AP0C0L4 1744 aa16.42■□□□□ 0.22
USH1C-208ENST00000529563 N4BP2Q86UW6 1770 aaPredicted RBP16.41■□□□□ 0.22
USH1C-208ENST00000529563 DIAPH1O60610 1272 aaKnown RBP16.41■□□□□ 0.22
USH1C-208ENST00000529563 ZEB1P37275 1124 aaPredicted RBP16.41■□□□□ 0.22
USH1C-208ENST00000529563 AMER1Q5JTC6 1135 aaPredicted RBP16.41■□□□□ 0.22
USH1C-208ENST00000529563 FKBP8Q14318 412 aa16.4■□□□□ 0.22
USH1C-208ENST00000529563 PIM2Q9P1W9 311 aa16.4■□□□□ 0.22
USH1C-208ENST00000529563 USP42Q9H9J4 1324 aaKnown RBP16.4■□□□□ 0.22
USH1C-208ENST00000529563 RNMTO43148 476 aaKnown RBP16.39■□□□□ 0.21
USH1C-208ENST00000529563 HSPA6P17066 643 aa16.39■□□□□ 0.21
USH1C-208ENST00000529563 DNAJC10Q8IXB1 793 aa16.39■□□□□ 0.21
USH1C-208ENST00000529563 TTC5Q8N0Z6 440 aa16.39■□□□□ 0.21
USH1C-208ENST00000529563 LGR6Q9HBX8 967 aa16.39■□□□□ 0.21
USH1C-208ENST00000529563 U2SURPO15042 1029 aaKnown RBP16.38■□□□□ 0.21
USH1C-208ENST00000529563 SLC39A6Q13433 755 aa16.38■□□□□ 0.21
USH1C-208ENST00000529563 DALRD3Q5D0E6 543 aaKnown RBP16.38■□□□□ 0.21
USH1C-208ENST00000529563 SCN11AQ9UI33 1791 aa16.38■□□□□ 0.21
USH1C-208ENST00000529563 KIF13BQ9NQT8 1826 aa16.38■□□□□ 0.21
USH1C-208ENST00000529563 MYH14Q7Z406 1995 aaKnown RBP16.37■□□□□ 0.21
USH1C-208ENST00000529563 USPL1Q5W0Q7 1092 aa16.37■□□□□ 0.21
USH1C-208ENST00000529563 INTS5Q6P9B9 1019 aaKnown RBP16.37■□□□□ 0.21
USH1C-208ENST00000529563 MTHFSDQ2M296 383 aaKnown RBP16.36■□□□□ 0.21
USH1C-208ENST00000529563 C16orf71Q8IYS4 520 aaPredicted RBP16.36■□□□□ 0.21
USH1C-208ENST00000529563 TJP1Q07157 1748 aa16.36■□□□□ 0.21
USH1C-208ENST00000529563 DDR1Q08345 913 aa16.35■□□□□ 0.21
USH1C-208ENST00000529563 C9orf131Q5VYM1 1079 aa16.35■□□□□ 0.21
USH1C-208ENST00000529563 KIF3CO14782 793 aa16.34■□□□□ 0.21
USH1C-208ENST00000529563 CYP19A1P11511 503 aaPredicted RBP16.34■□□□□ 0.21
USH1C-208ENST00000529563 CANXP27824 592 aaKnown RBP16.34■□□□□ 0.21
USH1C-208ENST00000529563 CHRNA5P30532 468 aa16.34■□□□□ 0.21
USH1C-208ENST00000529563 TEFQ10587 303 aa16.34■□□□□ 0.21
USH1C-208ENST00000529563 NPM2Q86SE8 214 aaKnown RBP16.34■□□□□ 0.21
USH1C-208ENST00000529563 SOS1Q07889 1333 aaPredicted RBP16.34■□□□□ 0.21
USH1C-208ENST00000529563 POLRMTO00411 1230 aaKnown RBP16.33■□□□□ 0.2
USH1C-208ENST00000529563 STARD3NLO95772 234 aa16.33■□□□□ 0.2
USH1C-208ENST00000529563 RNF181Q9P0P0 153 aa16.33■□□□□ 0.2
USH1C-208ENST00000529563 ZNF330Q9Y3S2 320 aaPredicted RBP16.33■□□□□ 0.2
USH1C-208ENST00000529563 COL15A1P39059 1388 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms