RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 PANK3Q9H999 370 aa19.63■□□□□ 0.73
HIF3A-213ENST00000529542 ATG3Q9NT62 314 aa19.63■□□□□ 0.73
HIF3A-213ENST00000529542 GNPATO15228 680 aa19.62■□□□□ 0.73
HIF3A-213ENST00000529542 ITPK1Q13572 414 aa19.62■□□□□ 0.73
HIF3A-213ENST00000529542 AMIGO3Q86WK7 504 aa19.62■□□□□ 0.73
HIF3A-213ENST00000529542 HSPA5P11021 654 aaKnown RBP19.61■□□□□ 0.73
HIF3A-213ENST00000529542 ADRA2BP18089 450 aa19.6■□□□□ 0.73
HIF3A-213ENST00000529542 RC3H1Q5TC82 1133 aaKnown RBP19.6■□□□□ 0.73
HIF3A-213ENST00000529542 RTCBQ9Y3I0 505 aaKnown RBP19.6■□□□□ 0.73
HIF3A-213ENST00000529542 TRAPPC3LQ5T215 181 aa19.59■□□□□ 0.73
HIF3A-213ENST00000529542 NLGN1Q8N2Q7 840 aa19.59■□□□□ 0.73
HIF3A-213ENST00000529542 GOLGB1Q14789 3259 aaKnown RBP19.59■□□□□ 0.73
HIF3A-213ENST00000529542 MORC1Q86VD1 984 aa19.58■□□□□ 0.72
HIF3A-213ENST00000529542 KDRP35968 1356 aa19.57■□□□□ 0.72
HIF3A-213ENST00000529542 CABP4P57796 275 aa19.57■□□□□ 0.72
HIF3A-213ENST00000529542 ZNF831Q5JPB2 1677 aa19.56■□□□□ 0.72
HIF3A-213ENST00000529542 C1orf141Q5JVX7 400 aa19.56■□□□□ 0.72
HIF3A-213ENST00000529542 ZNF530Q6P9A1 599 aaPredicted RBP19.56■□□□□ 0.72
HIF3A-213ENST00000529542 SMIM5Q71RC9 77 aa19.56■□□□□ 0.72
HIF3A-213ENST00000529542 RBM42Q9BTD8 480 aaKnown RBP19.56■□□□□ 0.72
HIF3A-213ENST00000529542 KNSTRNQ9Y448 316 aa19.56■□□□□ 0.72
HIF3A-213ENST00000529542 CNTNAP4Q9C0A0 1308 aa19.55■□□□□ 0.72
HIF3A-213ENST00000529542 MMP10P09238 476 aa19.55■□□□□ 0.72
HIF3A-213ENST00000529542 MTHFSP49914 203 aa19.55■□□□□ 0.72
HIF3A-213ENST00000529542 TGFB2P61812 414 aa19.55■□□□□ 0.72
HIF3A-213ENST00000529542 GPBP1L1Q9HC44 474 aaPredicted RBP19.55■□□□□ 0.72
HIF3A-213ENST00000529542 ATP10DQ9P241 1426 aa19.55■□□□□ 0.72
HIF3A-213ENST00000529542 RPS6KA4O75676 772 aa19.54■□□□□ 0.72
HIF3A-213ENST00000529542 ADCY9O60503 1353 aa19.54■□□□□ 0.72
HIF3A-213ENST00000529542 RFC4P35249 363 aa19.52■□□□□ 0.72
HIF3A-213ENST00000529542 ARHGEF1Q92888 912 aaKnown RBP19.52■□□□□ 0.72
HIF3A-213ENST00000529542 SLC4A9Q96Q91 983 aa19.52■□□□□ 0.72
HIF3A-213ENST00000529542 KDM6AO15550 1401 aaPredicted RBP19.51■□□□□ 0.71
HIF3A-213ENST00000529542 SULT6B1Q6IMI4 303 aa19.5■□□□□ 0.71
HIF3A-213ENST00000529542 CCER1Q8TC90 406 aaPredicted RBP19.5■□□□□ 0.71
HIF3A-213ENST00000529542 CCDC87Q9NVE4 849 aa19.5■□□□□ 0.71
HIF3A-213ENST00000529542 GYS1P13807 737 aa19.49■□□□□ 0.71
HIF3A-213ENST00000529542 PARP3Q9Y6F1 533 aa19.49■□□□□ 0.71
HIF3A-213ENST00000529542 IL13P35225 146 aa19.48■□□□□ 0.71
HIF3A-213ENST00000529542 AEBP1Q8IUX7 1158 aa19.48■□□□□ 0.71
HIF3A-213ENST00000529542 NFATC2IPQ8NCF5 419 aa19.48■□□□□ 0.71
HIF3A-213ENST00000529542 PTCD1O75127 700 aaKnown RBP19.47■□□□□ 0.71
HIF3A-213ENST00000529542 AKAP4Q5JQC9 854 aa19.47■□□□□ 0.71
HIF3A-213ENST00000529542 C10orf71Q711Q0 1435 aa19.46■□□□□ 0.71
HIF3A-213ENST00000529542 PXDNLA1KZ92 1463 aa19.46■□□□□ 0.71
HIF3A-213ENST00000529542 KIF13BQ9NQT8 1826 aa19.46■□□□□ 0.71
HIF3A-213ENST00000529542 COL5A3P25940 1745 aaPredicted RBP19.45■□□□□ 0.7
HIF3A-213ENST00000529542 CRKLP46109 303 aaKnown RBP19.45■□□□□ 0.7
HIF3A-213ENST00000529542 AMER1Q5JTC6 1135 aaPredicted RBP19.45■□□□□ 0.7
HIF3A-213ENST00000529542 CICQ96RK0 1608 aaPredicted RBP19.44■□□□□ 0.7
HIF3A-213ENST00000529542 WWC3Q9ULE0 1092 aa19.44■□□□□ 0.7
HIF3A-213ENST00000529542 BCS1LQ9Y276 419 aa19.44■□□□□ 0.7
HIF3A-213ENST00000529542 A0A0G2JLW4 131 aa19.43■□□□□ 0.7
HIF3A-213ENST00000529542 ZNF526Q8TF50 670 aaPredicted RBP19.42■□□□□ 0.7
HIF3A-213ENST00000529542 SLC52A2Q9HAB3 445 aa19.42■□□□□ 0.7
HIF3A-213ENST00000529542 USP42Q9H9J4 1324 aaKnown RBP19.42■□□□□ 0.7
HIF3A-213ENST00000529542 HSPA6P17066 643 aa19.41■□□□□ 0.7
HIF3A-213ENST00000529542 C4AP0C0L4 1744 aa19.41■□□□□ 0.7
HIF3A-213ENST00000529542 MYH14Q7Z406 1995 aaKnown RBP19.41■□□□□ 0.7
HIF3A-213ENST00000529542 FCHSD2O94868 740 aa19.4■□□□□ 0.7
HIF3A-213ENST00000529542 DPEP1P16444 411 aa19.4■□□□□ 0.7
HIF3A-213ENST00000529542 PIM2Q9P1W9 311 aa19.4■□□□□ 0.7
HIF3A-213ENST00000529542 INTS5Q6P9B9 1019 aaKnown RBP19.39■□□□□ 0.69
HIF3A-213ENST00000529542 ARHGAP27Q6ZUM4 889 aa19.39■□□□□ 0.69
HIF3A-213ENST00000529542 KIF7Q2M1P5 1343 aa19.39■□□□□ 0.69
HIF3A-213ENST00000529542 KIF3CO14782 793 aa19.38■□□□□ 0.69
HIF3A-213ENST00000529542 RNMTO43148 476 aaKnown RBP19.38■□□□□ 0.69
HIF3A-213ENST00000529542 ZPR1O75312 459 aa19.38■□□□□ 0.69
HIF3A-213ENST00000529542 SCN11AQ9UI33 1791 aa19.38■□□□□ 0.69
HIF3A-213ENST00000529542 KIAA1551Q9HCM1 1747 aa19.37■□□□□ 0.69
HIF3A-213ENST00000529542 PER1O15534 1290 aaPredicted RBP19.37■□□□□ 0.69
HIF3A-213ENST00000529542 DIAPH1O60610 1272 aaKnown RBP19.37■□□□□ 0.69
HIF3A-213ENST00000529542 KCNA3P22001 575 aa19.37■□□□□ 0.69
HIF3A-213ENST00000529542 FKBP8Q14318 412 aa19.37■□□□□ 0.69
HIF3A-213ENST00000529542 VSIG10Q8N0Z9 540 aa19.37■□□□□ 0.69
HIF3A-213ENST00000529542 TM4SF1P30408 202 aa19.36■□□□□ 0.69
HIF3A-213ENST00000529542 LGR6Q9HBX8 967 aa19.36■□□□□ 0.69
HIF3A-213ENST00000529542 SRP68Q9UHB9 627 aaKnown RBP19.36■□□□□ 0.69
HIF3A-213ENST00000529542 N4BP2Q86UW6 1770 aaPredicted RBP19.36■□□□□ 0.69
HIF3A-213ENST00000529542 HMOX1P09601 288 aa19.35■□□□□ 0.69
HIF3A-213ENST00000529542 CYP19A1P11511 503 aaPredicted RBP19.35■□□□□ 0.69
HIF3A-213ENST00000529542 DALRD3Q5D0E6 543 aaKnown RBP19.35■□□□□ 0.69
HIF3A-213ENST00000529542 DNAJC10Q8IXB1 793 aa19.35■□□□□ 0.69
HIF3A-213ENST00000529542 MRC1P22897 1456 aa19.35■□□□□ 0.69
HIF3A-213ENST00000529542 NPC1L1Q9UHC9 1359 aa19.34■□□□□ 0.69
HIF3A-213ENST00000529542 SOS1Q07889 1333 aaPredicted RBP19.34■□□□□ 0.69
HIF3A-213ENST00000529542 TOMM70O94826 608 aa19.34■□□□□ 0.69
HIF3A-213ENST00000529542 TJP1Q07157 1748 aa19.34■□□□□ 0.69
HIF3A-213ENST00000529542 POLRMTO00411 1230 aaKnown RBP19.33■□□□□ 0.68
HIF3A-213ENST00000529542 DDR1Q08345 913 aa19.33■□□□□ 0.68
HIF3A-213ENST00000529542 MTHFSDQ2M296 383 aaKnown RBP19.33■□□□□ 0.68
HIF3A-213ENST00000529542 NARFQ9UHQ1 456 aa19.33■□□□□ 0.68
HIF3A-213ENST00000529542 BRCA1P38398 1863 aaKnown RBP19.31■□□□□ 0.68
HIF3A-213ENST00000529542 SLC39A6Q13433 755 aa19.31■□□□□ 0.68
HIF3A-213ENST00000529542 USPL1Q5W0Q7 1092 aa19.31■□□□□ 0.68
HIF3A-213ENST00000529542 ARFGEF1Q9Y6D6 1849 aa19.3■□□□□ 0.68
HIF3A-213ENST00000529542 STARD3NLO95772 234 aa19.3■□□□□ 0.68
HIF3A-213ENST00000529542 APLP1P51693 650 aa19.3■□□□□ 0.68
HIF3A-213ENST00000529542 CC2D1BQ5T0F9 858 aaKnown RBP19.3■□□□□ 0.68
HIF3A-213ENST00000529542 C9orf131Q5VYM1 1079 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms