RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 SIK1P57059 783 aa12.92□□□□□ -0.34
CHD7-208ENST00000528280 AKAP4Q5JQC9 854 aa12.92□□□□□ -0.34
CHD7-208ENST00000528280 GPBP1L1Q9HC44 474 aaPredicted RBP12.92□□□□□ -0.34
CHD7-208ENST00000528280 LY75O60449 1722 aa12.91□□□□□ -0.34
CHD7-208ENST00000528280 MSH5O43196 834 aa12.91□□□□□ -0.34
CHD7-208ENST00000528280 AEBP1Q8IUX7 1158 aa12.91□□□□□ -0.34
CHD7-208ENST00000528280 AK7Q96M32 723 aa12.91□□□□□ -0.34
CHD7-208ENST00000528280 ASAP1Q9ULH1 1129 aa12.91□□□□□ -0.34
CHD7-208ENST00000528280 NUDCQ9Y266 331 aa12.91□□□□□ -0.34
CHD7-208ENST00000528280 PNPLA7Q6ZV29 1317 aa12.9□□□□□ -0.34
CHD7-208ENST00000528280 YBX3P16989 372 aaKnown RBP eCLIP12.9□□□□□ -0.34
CHD7-208ENST00000528280 ATP6V1AP38606 617 aa12.9□□□□□ -0.34
CHD7-208ENST00000528280 NLGN2Q8NFZ4 835 aa12.9□□□□□ -0.34
CHD7-208ENST00000528280 ATG3Q9NT62 314 aa12.9□□□□□ -0.34
CHD7-208ENST00000528280 CNGB1Q14028 1251 aaPredicted RBP12.89□□□□□ -0.35
CHD7-208ENST00000528280 KLHL34Q8N239 644 aa12.89□□□□□ -0.35
CHD7-208ENST00000528280 DNAJC5GQ8N7S2 189 aa12.89□□□□□ -0.35
CHD7-208ENST00000528280 ITGB4P16144 1822 aa12.88□□□□□ -0.35
CHD7-208ENST00000528280 TUBGCP6Q96RT7 1819 aa12.88□□□□□ -0.35
CHD7-208ENST00000528280 U2SURPO15042 1029 aaKnown RBP12.88□□□□□ -0.35
CHD7-208ENST00000528280 HMOX1P09601 288 aa12.88□□□□□ -0.35
CHD7-208ENST00000528280 COL23A1Q86Y22 540 aaPredicted RBP12.88□□□□□ -0.35
CHD7-208ENST00000528280 NFATC2IPQ8NCF5 419 aa12.88□□□□□ -0.35
CHD7-208ENST00000528280 SSFA2P28290 1259 aa12.87□□□□□ -0.35
CHD7-208ENST00000528280 RC3H1Q5TC82 1133 aaKnown RBP12.87□□□□□ -0.35
CHD7-208ENST00000528280 RBM42Q9BTD8 480 aaKnown RBP12.87□□□□□ -0.35
CHD7-208ENST00000528280 ADCY9O60503 1353 aa12.86□□□□□ -0.35
CHD7-208ENST00000528280 APLP1P51693 650 aa12.86□□□□□ -0.35
CHD7-208ENST00000528280 GAS2L2Q8NHY3 880 aa12.86□□□□□ -0.35
CHD7-208ENST00000528280 PPP2R1AP30153 589 aa12.85□□□□□ -0.35
CHD7-208ENST00000528280 MTHFSDQ2M296 383 aaKnown RBP12.85□□□□□ -0.35
CHD7-208ENST00000528280 COL13A1Q5TAT6 717 aaPredicted RBP12.85□□□□□ -0.35
CHD7-208ENST00000528280 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.84□□□□□ -0.35
CHD7-208ENST00000528280 RNMTO43148 476 aaKnown RBP12.84□□□□□ -0.35
CHD7-208ENST00000528280 CAPN15O75808 1086 aa12.84□□□□□ -0.35
CHD7-208ENST00000528280 FCHSD2O94868 740 aa12.84□□□□□ -0.35
CHD7-208ENST00000528280 ADRA2BP18089 450 aa12.84□□□□□ -0.35
CHD7-208ENST00000528280 PRELPP51888 382 aa12.84□□□□□ -0.35
CHD7-208ENST00000528280 TRAPPC3LQ5T215 181 aa12.84□□□□□ -0.35
CHD7-208ENST00000528280 LINC00116Q8NCU8 138 aa12.84□□□□□ -0.35
CHD7-208ENST00000528280 SLC52A2Q9HAB3 445 aa12.84□□□□□ -0.35
CHD7-208ENST00000528280 RTCBQ9Y3I0 505 aaKnown RBP12.84□□□□□ -0.35
CHD7-208ENST00000528280 TOGARAM1Q9Y4F4 1720 aa12.83□□□□□ -0.36
CHD7-208ENST00000528280 GNAT3A8MTJ3 354 aa12.83□□□□□ -0.36
CHD7-208ENST00000528280 GNPATO15228 680 aa12.83□□□□□ -0.36
CHD7-208ENST00000528280 NEFMP07197 916 aa12.83□□□□□ -0.36
CHD7-208ENST00000528280 ITPK1Q13572 414 aa12.83□□□□□ -0.36
CHD7-208ENST00000528280 PNNQ9H307 717 aaKnown RBP12.83□□□□□ -0.36
CHD7-208ENST00000528280 LGR6Q9HBX8 967 aa12.83□□□□□ -0.36
CHD7-208ENST00000528280 KDM6AO15550 1401 aaPredicted RBP12.82□□□□□ -0.36
CHD7-208ENST00000528280 KIF3CO14782 793 aa12.82□□□□□ -0.36
CHD7-208ENST00000528280 PTCD1O75127 700 aaKnown RBP12.82□□□□□ -0.36
CHD7-208ENST00000528280 RPS6KA4O75676 772 aa12.82□□□□□ -0.36
CHD7-208ENST00000528280 NLGN1Q8N2Q7 840 aa12.82□□□□□ -0.36
CHD7-208ENST00000528280 ZNF526Q8TF50 670 aaPredicted RBP12.82□□□□□ -0.36
CHD7-208ENST00000528280 C5P01031 1676 aa12.82□□□□□ -0.36
CHD7-208ENST00000528280 WDR90Q96KV7 1748 aa12.82□□□□□ -0.36
CHD7-208ENST00000528280 PHF14O94880 888 aa12.81□□□□□ -0.36
CHD7-208ENST00000528280 U2AF1L5P0DN76 240 aaPredicted RBP12.81□□□□□ -0.36
CHD7-208ENST00000528280 ZEB1P37275 1124 aaPredicted RBP12.81□□□□□ -0.36
CHD7-208ENST00000528280 U2AF1Q01081 240 aaKnown RBP eCLIP12.81□□□□□ -0.36
CHD7-208ENST00000528280 TEFQ10587 303 aa12.81□□□□□ -0.36
CHD7-208ENST00000528280 CD2APQ9Y5K6 639 aa12.81□□□□□ -0.36
CHD7-208ENST00000528280 C4BP0C0L5 1744 aa12.81□□□□□ -0.36
CHD7-208ENST00000528280 CNTNAP4Q9C0A0 1308 aa12.81□□□□□ -0.36
CHD7-208ENST00000528280 TAF1LQ8IZX4 1826 aa12.81□□□□□ -0.36
CHD7-208ENST00000528280 RFC4P35249 363 aa12.8□□□□□ -0.36
CHD7-208ENST00000528280 RALBP1Q15311 655 aa12.8□□□□□ -0.36
CHD7-208ENST00000528280 VSIG10Q8N0Z9 540 aa12.8□□□□□ -0.36
CHD7-208ENST00000528280 SLC34A2O95436 690 aa12.79□□□□□ -0.36
CHD7-208ENST00000528280 PRKAR2BP31323 418 aa12.79□□□□□ -0.36
CHD7-208ENST00000528280 TNS4Q8IZW8 715 aa12.79□□□□□ -0.36
CHD7-208ENST00000528280 TTC5Q8N0Z6 440 aa12.79□□□□□ -0.36
CHD7-208ENST00000528280 RTF1Q92541 710 aaKnown RBP12.79□□□□□ -0.36
CHD7-208ENST00000528280 SLC4A9Q96Q91 983 aa12.79□□□□□ -0.36
CHD7-208ENST00000528280 TEX13AQ9BXU3 409 aaPredicted RBP12.79□□□□□ -0.36
CHD7-208ENST00000528280 ZNF831Q5JPB2 1677 aa12.79□□□□□ -0.36
CHD7-208ENST00000528280 COL3A1P02461 1466 aaPredicted RBP12.78□□□□□ -0.36
CHD7-208ENST00000528280 HTATSF1O43719 755 aaKnown RBP12.78□□□□□ -0.36
CHD7-208ENST00000528280 MSL1Q68DK7 614 aa12.78□□□□□ -0.36
CHD7-208ENST00000528280 ARHGEF1Q92888 912 aaKnown RBP12.78□□□□□ -0.36
CHD7-208ENST00000528280 RSPH6AQ9H0K4 717 aa12.78□□□□□ -0.36
CHD7-208ENST00000528280 STARD3NLO95772 234 aa12.77□□□□□ -0.37
CHD7-208ENST00000528280 CRKLP46109 303 aaKnown RBP12.77□□□□□ -0.37
CHD7-208ENST00000528280 IL17REQ8NFR9 667 aa12.77□□□□□ -0.37
CHD7-208ENST00000528280 SCN11AQ9UI33 1791 aa12.76□□□□□ -0.37
CHD7-208ENST00000528280 DDX10Q13206 875 aaKnown RBP12.76□□□□□ -0.37
CHD7-208ENST00000528280 JMYQ8N9B5 988 aa12.76□□□□□ -0.37
CHD7-208ENST00000528280 PHACTR3Q96KR7 559 aa12.76□□□□□ -0.37
CHD7-208ENST00000528280 TOMM70O94826 608 aa12.75□□□□□ -0.37
CHD7-208ENST00000528280 SLC39A6Q13433 755 aa12.75□□□□□ -0.37
CHD7-208ENST00000528280 AMIGO3Q86WK7 504 aa12.75□□□□□ -0.37
CHD7-208ENST00000528280 CCDC87Q9NVE4 849 aa12.75□□□□□ -0.37
CHD7-208ENST00000528280 UBR3Q6ZT12 1888 aa12.74□□□□□ -0.37
CHD7-208ENST00000528280 BTBD11A6QL63 1104 aa12.74□□□□□ -0.37
CHD7-208ENST00000528280 ZPR1O75312 459 aa12.74□□□□□ -0.37
CHD7-208ENST00000528280 CYP19A1P11511 503 aaPredicted RBP12.74□□□□□ -0.37
CHD7-208ENST00000528280 INTS5Q6P9B9 1019 aaKnown RBP12.74□□□□□ -0.37
CHD7-208ENST00000528280 ZNF790Q6PG37 636 aa12.74□□□□□ -0.37
CHD7-208ENST00000528280 DNAJC10Q8IXB1 793 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms