RNA–Protein interactions for RNA: ENST00000526877.1

SSSCA1-203, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3 BASIC

Gene SSSCA1, Length 713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-203ENST00000526877 ASAP1Q9ULH1 1129 aa16.78■□□□□ 0.28
SSSCA1-203ENST00000526877 U2AF1L5P0DN76 240 aaPredicted RBP16.77■□□□□ 0.28
SSSCA1-203ENST00000526877 U2AF1Q01081 240 aaKnown RBP eCLIP16.77■□□□□ 0.28
SSSCA1-203ENST00000526877 COL23A1Q86Y22 540 aaPredicted RBP16.77■□□□□ 0.28
SSSCA1-203ENST00000526877 TMOD3Q9NYL9 352 aa16.77■□□□□ 0.28
SSSCA1-203ENST00000526877 ERVV-2B6SEH9 535 aa16.76■□□□□ 0.27
SSSCA1-203ENST00000526877 DCAF5Q96JK2 942 aa16.76■□□□□ 0.27
SSSCA1-203ENST00000526877 ARXQ96QS3 562 aa16.76■□□□□ 0.27
SSSCA1-203ENST00000526877 SYT17Q9BSW7 474 aa16.76■□□□□ 0.27
SSSCA1-203ENST00000526877 PNNQ9H307 717 aaKnown RBP16.76■□□□□ 0.27
SSSCA1-203ENST00000526877 ATG3Q9NT62 314 aa16.76■□□□□ 0.27
SSSCA1-203ENST00000526877 ZNF530Q6P9A1 599 aaPredicted RBP16.75■□□□□ 0.27
SSSCA1-203ENST00000526877 FHDC1Q9C0D6 1143 aaPredicted RBP16.75■□□□□ 0.27
SSSCA1-203ENST00000526877 KDM6AO15550 1401 aaPredicted RBP16.75■□□□□ 0.27
SSSCA1-203ENST00000526877 C4BP0C0L5 1744 aa16.74■□□□□ 0.27
SSSCA1-203ENST00000526877 LOC102724428A0A0B4J2F2 783 aa16.74■□□□□ 0.27
SSSCA1-203ENST00000526877 HSP90AB1P08238 724 aaKnown RBP16.74■□□□□ 0.27
SSSCA1-203ENST00000526877 HMGB2P26583 209 aaKnown RBP16.74■□□□□ 0.27
SSSCA1-203ENST00000526877 SIK1P57059 783 aa16.74■□□□□ 0.27
SSSCA1-203ENST00000526877 AMIGO3Q86WK7 504 aa16.74■□□□□ 0.27
SSSCA1-203ENST00000526877 CENPBP07199 599 aaPredicted RBP16.73■□□□□ 0.27
SSSCA1-203ENST00000526877 UBR3Q6ZT12 1888 aa16.72■□□□□ 0.27
SSSCA1-203ENST00000526877 ITPK1Q13572 414 aa16.72■□□□□ 0.27
SSSCA1-203ENST00000526877 LINC00116Q8NCU8 138 aa16.72■□□□□ 0.27
SSSCA1-203ENST00000526877 SLC4A9Q96Q91 983 aa16.72■□□□□ 0.27
SSSCA1-203ENST00000526877 MAP3K5Q99683 1374 aa16.72■□□□□ 0.27
SSSCA1-203ENST00000526877 HMOX1P09601 288 aa16.71■□□□□ 0.27
SSSCA1-203ENST00000526877 RUNDC1Q96C34 613 aa16.71■□□□□ 0.27
SSSCA1-203ENST00000526877 FCHSD2O94868 740 aa16.7■□□□□ 0.26
SSSCA1-203ENST00000526877 NEFMP07197 916 aa16.7■□□□□ 0.26
SSSCA1-203ENST00000526877 C1orf141Q5JVX7 400 aa16.7■□□□□ 0.26
SSSCA1-203ENST00000526877 SMIM5Q71RC9 77 aa16.7■□□□□ 0.26
SSSCA1-203ENST00000526877 CCDC146Q8IYE0 955 aa16.7■□□□□ 0.26
SSSCA1-203ENST00000526877 FLAD1Q8NFF5 587 aa16.7■□□□□ 0.26
SSSCA1-203ENST00000526877 SCN11AQ9UI33 1791 aa16.69■□□□□ 0.26
SSSCA1-203ENST00000526877 ZNF831Q5JPB2 1677 aa16.69■□□□□ 0.26
SSSCA1-203ENST00000526877 MSH5O43196 834 aa16.69■□□□□ 0.26
SSSCA1-203ENST00000526877 POLD1P28340 1107 aa16.69■□□□□ 0.26
SSSCA1-203ENST00000526877 ATP6V1AP38606 617 aa16.69■□□□□ 0.26
SSSCA1-203ENST00000526877 CABP4P57796 275 aa16.69■□□□□ 0.26
SSSCA1-203ENST00000526877 AKAP4Q5JQC9 854 aa16.69■□□□□ 0.26
SSSCA1-203ENST00000526877 ZBED9Q6R2W3 1325 aa16.69■□□□□ 0.26
SSSCA1-203ENST00000526877 NFATC2IPQ8NCF5 419 aa16.68■□□□□ 0.26
SSSCA1-203ENST00000526877 AK7Q96M32 723 aa16.68■□□□□ 0.26
SSSCA1-203ENST00000526877 MAPK8IP3Q9UPT6 1336 aa16.68■□□□□ 0.26
SSSCA1-203ENST00000526877 MTHFSDQ2M296 383 aaKnown RBP16.67■□□□□ 0.26
SSSCA1-203ENST00000526877 NGEFQ8N5V2 710 aa16.67■□□□□ 0.26
SSSCA1-203ENST00000526877 LGR6Q9HBX8 967 aa16.67■□□□□ 0.26
SSSCA1-203ENST00000526877 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.66■□□□□ 0.26
SSSCA1-203ENST00000526877 APAF1O14727 1248 aa16.66■□□□□ 0.26
SSSCA1-203ENST00000526877 MSL1Q68DK7 614 aa16.66■□□□□ 0.26
SSSCA1-203ENST00000526877 RSPH6AQ9H0K4 717 aa16.66■□□□□ 0.26
SSSCA1-203ENST00000526877 VIRMAQ69YN4 1812 aaKnown RBP16.66■□□□□ 0.26
SSSCA1-203ENST00000526877 DCAF8L1A6NGE4 600 aa16.65■□□□□ 0.26
SSSCA1-203ENST00000526877 SSFA2P28290 1259 aa16.65■□□□□ 0.26
SSSCA1-203ENST00000526877 RBM42Q9BTD8 480 aaKnown RBP16.65■□□□□ 0.26
SSSCA1-203ENST00000526877 COL5A3P25940 1745 aaPredicted RBP16.65■□□□□ 0.26
SSSCA1-203ENST00000526877 MYH14Q7Z406 1995 aaKnown RBP16.64■□□□□ 0.25
SSSCA1-203ENST00000526877 RNMTO43148 476 aaKnown RBP16.64■□□□□ 0.25
SSSCA1-203ENST00000526877 PHF14O94880 888 aa16.64■□□□□ 0.25
SSSCA1-203ENST00000526877 PRKAR2BP31323 418 aa16.64■□□□□ 0.25
SSSCA1-203ENST00000526877 PLEKHF1Q96S99 279 aa16.64■□□□□ 0.25
SSSCA1-203ENST00000526877 SLC52A2Q9HAB3 445 aa16.64■□□□□ 0.25
SSSCA1-203ENST00000526877 SALL2Q9Y467 1007 aaPredicted RBP16.64■□□□□ 0.25
SSSCA1-203ENST00000526877 ADAMTS7Q9UKP4 1686 aa16.64■□□□□ 0.25
SSSCA1-203ENST00000526877 SENP3-EIF4A1A0A087X0R7 540 aa16.63■□□□□ 0.25
SSSCA1-203ENST00000526877 GNPATO15228 680 aa16.63■□□□□ 0.25
SSSCA1-203ENST00000526877 RC3H1Q5TC82 1133 aaKnown RBP16.63■□□□□ 0.25
SSSCA1-203ENST00000526877 PTCD1O75127 700 aaKnown RBP16.62■□□□□ 0.25
SSSCA1-203ENST00000526877 NLGN2Q8NFZ4 835 aa16.62■□□□□ 0.25
SSSCA1-203ENST00000526877 MRC1P22897 1456 aa16.61■□□□□ 0.25
SSSCA1-203ENST00000526877 NCBP3Q53F19 620 aaKnown RBP16.61■□□□□ 0.25
SSSCA1-203ENST00000526877 CNTNAP4Q9C0A0 1308 aa16.61■□□□□ 0.25
SSSCA1-203ENST00000526877 CICQ96RK0 1608 aaPredicted RBP16.6■□□□□ 0.25
SSSCA1-203ENST00000526877 RPS6KA4O75676 772 aa16.6■□□□□ 0.25
SSSCA1-203ENST00000526877 YY1P25490 414 aa16.6■□□□□ 0.25
SSSCA1-203ENST00000526877 KLHL34Q8N239 644 aa16.6■□□□□ 0.25
SSSCA1-203ENST00000526877 TJP1Q07157 1748 aa16.59■□□□□ 0.25
SSSCA1-203ENST00000526877 TRAPPC3LQ5T215 181 aa16.59■□□□□ 0.25
SSSCA1-203ENST00000526877 ARHGEF1Q92888 912 aaKnown RBP16.59■□□□□ 0.25
SSSCA1-203ENST00000526877 PHACTR3Q96KR7 559 aa16.59■□□□□ 0.25
SSSCA1-203ENST00000526877 RTCBQ9Y3I0 505 aaKnown RBP16.59■□□□□ 0.25
SSSCA1-203ENST00000526877 TMPOP42166 694 aaKnown RBP16.58■□□□□ 0.24
SSSCA1-203ENST00000526877 SLC39A6Q13433 755 aa16.58■□□□□ 0.24
SSSCA1-203ENST00000526877 NEUROD2Q15784 382 aa16.58■□□□□ 0.24
SSSCA1-203ENST00000526877 IL17REQ8NFR9 667 aa16.58■□□□□ 0.24
SSSCA1-203ENST00000526877 RRP7AQ9Y3A4 280 aaKnown RBP16.58■□□□□ 0.24
SSSCA1-203ENST00000526877 CD2APQ9Y5K6 639 aa16.58■□□□□ 0.24
SSSCA1-203ENST00000526877 CHD4Q14839 1912 aa16.57■□□□□ 0.24
SSSCA1-203ENST00000526877 ADRA2BP18089 450 aa16.57■□□□□ 0.24
SSSCA1-203ENST00000526877 CRKLP46109 303 aaKnown RBP16.57■□□□□ 0.24
SSSCA1-203ENST00000526877 NFE2L2Q16236 605 aa16.57■□□□□ 0.24
SSSCA1-203ENST00000526877 CCDC27Q2M243 656 aa16.57■□□□□ 0.24
SSSCA1-203ENST00000526877 UTRNP46939 3433 aa16.56■□□□□ 0.24
SSSCA1-203ENST00000526877 GNAT3A8MTJ3 354 aa16.56■□□□□ 0.24
SSSCA1-203ENST00000526877 RIPK4P57078 832 aa16.56■□□□□ 0.24
SSSCA1-203ENST00000526877 INTS5Q6P9B9 1019 aaKnown RBP16.56■□□□□ 0.24
SSSCA1-203ENST00000526877 GAS2L2Q8NHY3 880 aa16.56■□□□□ 0.24
SSSCA1-203ENST00000526877 KCPQ6ZWJ8 1503 aa16.55■□□□□ 0.24
SSSCA1-203ENST00000526877 DLG5Q8TDM6 1919 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms