RNA–Protein interactions for RNA: ENST00000525990.1

SSBP3-210, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-210ENST00000525990 COL3A1P02461 1466 aaPredicted RBP16.42■□□□□ 0.22
SSBP3-210ENST00000525990 C4AP0C0L4 1744 aa16.42■□□□□ 0.22
SSBP3-210ENST00000525990 MAP3K5Q99683 1374 aa16.41■□□□□ 0.22
SSBP3-210ENST00000525990 PHF14O94880 888 aa16.41■□□□□ 0.22
SSBP3-210ENST00000525990 YY1P25490 414 aa16.41■□□□□ 0.22
SSBP3-210ENST00000525990 PLEKHO1Q53GL0 409 aaPredicted RBP16.41■□□□□ 0.22
SSBP3-210ENST00000525990 SLC4A9Q96Q91 983 aa16.41■□□□□ 0.22
SSBP3-210ENST00000525990 HMOX1P09601 288 aa16.4■□□□□ 0.22
SSBP3-210ENST00000525990 POLD1P28340 1107 aa16.4■□□□□ 0.22
SSBP3-210ENST00000525990 NLGN2Q8NFZ4 835 aa16.4■□□□□ 0.22
SSBP3-210ENST00000525990 AK7Q96M32 723 aa16.4■□□□□ 0.22
SSBP3-210ENST00000525990 ATP6V1AP38606 617 aa16.39■□□□□ 0.21
SSBP3-210ENST00000525990 DCAF5Q96JK2 942 aa16.39■□□□□ 0.21
SSBP3-210ENST00000525990 ADAMTS7Q9UKP4 1686 aa16.39■□□□□ 0.21
SSBP3-210ENST00000525990 AMOTQ4VCS5 1084 aa16.38■□□□□ 0.21
SSBP3-210ENST00000525990 CICQ96RK0 1608 aaPredicted RBP16.37■□□□□ 0.21
SSBP3-210ENST00000525990 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.37■□□□□ 0.21
SSBP3-210ENST00000525990 DCAF8L1A6NGE4 600 aa16.37■□□□□ 0.21
SSBP3-210ENST00000525990 ERVV-2B6SEH9 535 aa16.37■□□□□ 0.21
SSBP3-210ENST00000525990 RBM42Q9BTD8 480 aaKnown RBP16.37■□□□□ 0.21
SSBP3-210ENST00000525990 GNPATO15228 680 aa16.36■□□□□ 0.21
SSBP3-210ENST00000525990 CABP4P57796 275 aa16.36■□□□□ 0.21
SSBP3-210ENST00000525990 C1orf141Q5JVX7 400 aa16.36■□□□□ 0.21
SSBP3-210ENST00000525990 NPC1L1Q9UHC9 1359 aa16.36■□□□□ 0.21
SSBP3-210ENST00000525990 HSP90AB1P08238 724 aaKnown RBP16.35■□□□□ 0.21
SSBP3-210ENST00000525990 UTRNP46939 3433 aa16.35■□□□□ 0.21
SSBP3-210ENST00000525990 SIPA1L3O60292 1781 aaPredicted RBP16.35■□□□□ 0.21
SSBP3-210ENST00000525990 MRC1P22897 1456 aa16.35■□□□□ 0.21
SSBP3-210ENST00000525990 KIAA1551Q9HCM1 1747 aa16.34■□□□□ 0.21
SSBP3-210ENST00000525990 UBR2Q8IWV8 1755 aa16.34■□□□□ 0.21
SSBP3-210ENST00000525990 DIAPH1O60610 1272 aaKnown RBP16.34■□□□□ 0.21
SSBP3-210ENST00000525990 NFATC2IPQ8NCF5 419 aa16.34■□□□□ 0.21
SSBP3-210ENST00000525990 LGR6Q9HBX8 967 aa16.34■□□□□ 0.21
SSBP3-210ENST00000525990 PTCD1O75127 700 aaKnown RBP16.33■□□□□ 0.2
SSBP3-210ENST00000525990 SSFA2P28290 1259 aa16.33■□□□□ 0.2
SSBP3-210ENST00000525990 PELP1Q8IZL8 1130 aaKnown RBP16.33■□□□□ 0.2
SSBP3-210ENST00000525990 FLAD1Q8NFF5 587 aa16.33■□□□□ 0.2
SSBP3-210ENST00000525990 N4BP2Q86UW6 1770 aaPredicted RBP16.33■□□□□ 0.2
SSBP3-210ENST00000525990 MTHFSDQ2M296 383 aaKnown RBP16.32■□□□□ 0.2
SSBP3-210ENST00000525990 KIF13BQ9NQT8 1826 aa16.32■□□□□ 0.2
SSBP3-210ENST00000525990 KCPQ6ZWJ8 1503 aa16.31■□□□□ 0.2
SSBP3-210ENST00000525990 GPR162Q16538 588 aa16.31■□□□□ 0.2
SSBP3-210ENST00000525990 AKAP4Q5JQC9 854 aa16.31■□□□□ 0.2
SSBP3-210ENST00000525990 U2SURPO15042 1029 aaKnown RBP16.3■□□□□ 0.2
SSBP3-210ENST00000525990 YBX3P16989 372 aaKnown RBP eCLIP16.3■□□□□ 0.2
SSBP3-210ENST00000525990 RNMTO43148 476 aaKnown RBP16.29■□□□□ 0.2
SSBP3-210ENST00000525990 SLC39A6Q13433 755 aa16.29■□□□□ 0.2
SSBP3-210ENST00000525990 CNTNAP4Q9C0A0 1308 aa16.28■□□□□ 0.2
SSBP3-210ENST00000525990 SLC52A2Q9HAB3 445 aa16.28■□□□□ 0.2
SSBP3-210ENST00000525990 WWC3Q9ULE0 1092 aa16.28■□□□□ 0.2
SSBP3-210ENST00000525990 GOLGB1Q14789 3259 aaKnown RBP16.27■□□□□ 0.2
SSBP3-210ENST00000525990 CRKLP46109 303 aaKnown RBP16.27■□□□□ 0.2
SSBP3-210ENST00000525990 ARHGEF1Q92888 912 aaKnown RBP16.27■□□□□ 0.2
SSBP3-210ENST00000525990 RTCBQ9Y3I0 505 aaKnown RBP16.27■□□□□ 0.2
SSBP3-210ENST00000525990 DLG5Q8TDM6 1919 aa16.26■□□□□ 0.19
SSBP3-210ENST00000525990 HMGB2P26583 209 aaKnown RBP16.26■□□□□ 0.19
SSBP3-210ENST00000525990 BRCA1P38398 1863 aaKnown RBP16.26■□□□□ 0.19
SSBP3-210ENST00000525990 RPS6KA4O75676 772 aa16.25■□□□□ 0.19
SSBP3-210ENST00000525990 PPP2R1AP30153 589 aa16.25■□□□□ 0.19
SSBP3-210ENST00000525990 TRAPPC3LQ5T215 181 aa16.25■□□□□ 0.19
SSBP3-210ENST00000525990 RC3H1Q5TC82 1133 aaKnown RBP16.25■□□□□ 0.19
SSBP3-210ENST00000525990 ZNF784Q8NCA9 323 aaPredicted RBP16.25■□□□□ 0.19
SSBP3-210ENST00000525990 CD2APQ9Y5K6 639 aa16.25■□□□□ 0.19
SSBP3-210ENST00000525990 MMP10P09238 476 aa16.24■□□□□ 0.19
SSBP3-210ENST00000525990 DNAJC10Q8IXB1 793 aa16.24■□□□□ 0.19
SSBP3-210ENST00000525990 PHACTR3Q96KR7 559 aa16.24■□□□□ 0.19
SSBP3-210ENST00000525990 SRP68Q9UHB9 627 aaKnown RBP16.24■□□□□ 0.19
SSBP3-210ENST00000525990 AFDNP55196 1824 aaKnown RBP16.24■□□□□ 0.19
SSBP3-210ENST00000525990 GYS1P13807 737 aa16.23■□□□□ 0.19
SSBP3-210ENST00000525990 INTS5Q6P9B9 1019 aaKnown RBP16.23■□□□□ 0.19
SSBP3-210ENST00000525990 PRKAR2BP31323 418 aa16.22■□□□□ 0.19
SSBP3-210ENST00000525990 IL17REQ8NFR9 667 aa16.22■□□□□ 0.19
SSBP3-210ENST00000525990 RSPH6AQ9H0K4 717 aa16.22■□□□□ 0.19
SSBP3-210ENST00000525990 RFC4P35249 363 aa16.21■□□□□ 0.19
SSBP3-210ENST00000525990 PXDNLA1KZ92 1463 aa16.21■□□□□ 0.19
SSBP3-210ENST00000525990 C10orf71Q711Q0 1435 aa16.2■□□□□ 0.18
SSBP3-210ENST00000525990 ADRA2BP18089 450 aa16.2■□□□□ 0.18
SSBP3-210ENST00000525990 CYP19A1P11511 503 aaPredicted RBP16.19■□□□□ 0.18
SSBP3-210ENST00000525990 CFAP53Q96M91 514 aa16.19■□□□□ 0.18
SSBP3-210ENST00000525990 CCDC87Q9NVE4 849 aa16.19■□□□□ 0.18
SSBP3-210ENST00000525990 ZBTB1Q9Y2K1 713 aa16.19■□□□□ 0.18
SSBP3-210ENST00000525990 USP42Q9H9J4 1324 aaKnown RBP16.19■□□□□ 0.18
SSBP3-210ENST00000525990 GNAT3A8MTJ3 354 aa16.18■□□□□ 0.18
SSBP3-210ENST00000525990 FKBP8Q14318 412 aa16.18■□□□□ 0.18
SSBP3-210ENST00000525990 NLGN1Q8N2Q7 840 aa16.18■□□□□ 0.18
SSBP3-210ENST00000525990 GAS2L2Q8NHY3 880 aa16.18■□□□□ 0.18
SSBP3-210ENST00000525990 SOS1Q07889 1333 aaPredicted RBP16.18■□□□□ 0.18
SSBP3-210ENST00000525990 SCN7AQ01118 1682 aa16.18■□□□□ 0.18
SSBP3-210ENST00000525990 CEMIPQ8WUJ3 1361 aa16.17■□□□□ 0.18
SSBP3-210ENST00000525990 U2AF1L5P0DN76 240 aaPredicted RBP16.17■□□□□ 0.18
SSBP3-210ENST00000525990 U2AF1Q01081 240 aaKnown RBP eCLIP16.17■□□□□ 0.18
SSBP3-210ENST00000525990 DDR1Q08345 913 aa16.17■□□□□ 0.18
SSBP3-210ENST00000525990 ARFGEF1Q9Y6D6 1849 aa16.17■□□□□ 0.18
SSBP3-210ENST00000525990 NRXN2Q9P2S2 1712 aa16.16■□□□□ 0.18
SSBP3-210ENST00000525990 COL15A1P39059 1388 aa16.16■□□□□ 0.18
SSBP3-210ENST00000525990 KCNQ3O43525 872 aa16.16■□□□□ 0.18
SSBP3-210ENST00000525990 TEFQ10587 303 aa16.16■□□□□ 0.18
SSBP3-210ENST00000525990 ZNF496Q96IT1 587 aaPredicted RBP16.16■□□□□ 0.18
SSBP3-210ENST00000525990 A0A0G2JLW4 131 aa16.15■□□□□ 0.18
SSBP3-210ENST00000525990 GRIN3BO60391 1043 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms