RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 G3BP2Q9UN86 482 aaKnown RBP5.97□□□□□ -1.45
CD44-213ENST00000525209 MRPL42Q9Y6G3 142 aaKnown RBP5.97□□□□□ -1.45
CD44-213ENST00000525209 RGS20O76081 388 aa5.96□□□□□ -1.46
CD44-213ENST00000525209 ABL1P00519 1130 aa5.96□□□□□ -1.46
CD44-213ENST00000525209 DNAJB2P25686 324 aa5.96□□□□□ -1.46
CD44-213ENST00000525209 TBX4P57082 545 aa5.96□□□□□ -1.46
CD44-213ENST00000525209 FOXD4Q12950 439 aaPredicted RBP5.96□□□□□ -1.46
CD44-213ENST00000525209 ECM1Q16610 540 aa5.96□□□□□ -1.46
CD44-213ENST00000525209 GLYCTKQ8IVS8 523 aa5.96□□□□□ -1.46
CD44-213ENST00000525209 STAG1Q8WVM7 1258 aa5.96□□□□□ -1.46
CD44-213ENST00000525209 IRX2Q9BZI1 471 aaPredicted RBP5.96□□□□□ -1.46
CD44-213ENST00000525209 PIK3CDO00329 1044 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 DNAJC6O75061 913 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 S100BP04271 92 aaPredicted RBP5.95□□□□□ -1.46
CD44-213ENST00000525209 TNNI2P48788 182 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 ARID5AQ03989 594 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 ZNF211Q13398 564 aaPredicted RBP5.95□□□□□ -1.46
CD44-213ENST00000525209 BIRC2Q13490 618 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 LARP1Q6PKG0 1096 aaKnown RBP5.95□□□□□ -1.46
CD44-213ENST00000525209 TAS1R3Q7RTX0 852 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 RNF135Q8IUD6 432 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 CNPY4Q8N129 248 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 PNISRQ8TF01 805 aaKnown RBP5.95□□□□□ -1.46
CD44-213ENST00000525209 ZBTB3Q9H5J0 574 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 TMEM134Q9H6X4 195 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 GEMIN8Q9NWZ8 242 aaKnown RBP5.95□□□□□ -1.46
CD44-213ENST00000525209 PRR12Q9ULL5 1215 aa5.95□□□□□ -1.46
CD44-213ENST00000525209 USP17L5A8MUK1 530 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 ENPP3O14638 875 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 C21orf2O43822 256 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 P4HBP07237 508 aaKnown RBP5.94□□□□□ -1.46
CD44-213ENST00000525209 XRCC5P13010 732 aaKnown RBP5.94□□□□□ -1.46
CD44-213ENST00000525209 NFE2L2Q16236 605 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 GRIPAP1Q4V328 841 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 KRBA2Q6ZNG9 492 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 ANKMY2Q8IV38 441 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 FMNL3Q8IVF7 1028 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 FAM9BQ8IZU0 186 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 PNMA1Q8ND90 353 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 EPS8L1Q8TE68 723 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 LRRN4Q8WUT4 740 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 RPS6KC1Q96S38 1066 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 SPC25Q9HBM1 224 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 ANO2Q9NQ90 1003 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 MKRN1Q9UHC7 482 aaKnown RBP5.94□□□□□ -1.46
CD44-213ENST00000525209 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.94□□□□□ -1.46
CD44-213ENST00000525209 RPS6KL1Q9Y6S9 549 aa5.94□□□□□ -1.46
CD44-213ENST00000525209 PRC1O43663 620 aa5.93□□□□□ -1.46
CD44-213ENST00000525209 SKIP12755 728 aa5.93□□□□□ -1.46
CD44-213ENST00000525209 MCCP23508 829 aa5.93□□□□□ -1.46
CD44-213ENST00000525209 SLC4A3P48751 1232 aa5.93□□□□□ -1.46
CD44-213ENST00000525209 ARHGAP4P98171 946 aa5.93□□□□□ -1.46
CD44-213ENST00000525209 BLOC1S3Q6QNY0 202 aa5.93□□□□□ -1.46
CD44-213ENST00000525209 MTA3Q9BTC8 594 aa5.93□□□□□ -1.46
CD44-213ENST00000525209 GNL3LQ9NVN8 582 aaKnown RBP5.93□□□□□ -1.46
CD44-213ENST00000525209 BSDC1Q9NW68 430 aaPredicted RBP5.93□□□□□ -1.46
CD44-213ENST00000525209 TLL1O43897 1013 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 CFHP08603 1231 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 SLC10A3P09131 477 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 RASA1P20936 1047 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 ZNF76P36508 570 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 ITGAEP38570 1179 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 XPCQ01831 940 aaPredicted RBP5.92□□□□□ -1.46
CD44-213ENST00000525209 C11orf96Q7Z7L8 435 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 MRFAP1L1Q96HT8 127 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 PCDHB3Q9Y5E6 796 aa5.92□□□□□ -1.46
CD44-213ENST00000525209 ATP5J2-PTCD1G3V325 749 aa5.91□□□□□ -1.46
CD44-213ENST00000525209 WDHD1O75717 1129 aaPredicted RBP5.91□□□□□ -1.46
CD44-213ENST00000525209 STK10O94804 968 aaKnown RBP5.91□□□□□ -1.46
CD44-213ENST00000525209 TMC4Q7Z404 712 aa5.91□□□□□ -1.46
CD44-213ENST00000525209 TSC1Q92574 1164 aa5.91□□□□□ -1.46
CD44-213ENST00000525209 PRKD2Q9BZL6 878 aa5.91□□□□□ -1.46
CD44-213ENST00000525209 TYW1Q9NV66 732 aaKnown RBP5.91□□□□□ -1.46
CD44-213ENST00000525209 PRKAB1Q9Y478 270 aa5.91□□□□□ -1.46
CD44-213ENST00000525209 COMMD10Q9Y6G5 202 aa5.91□□□□□ -1.46
CD44-213ENST00000525209 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.9□□□□□ -1.46
CD44-213ENST00000525209 SORBS3O60504 671 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 ZPR1O75312 459 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 PDGFRBP09619 1106 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 DPYDQ12882 1025 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 DEPDC4Q8N2C3 294 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 HELBQ8NG08 1087 aaPredicted RBP5.9□□□□□ -1.46
CD44-213ENST00000525209 JDP2Q8WYK2 163 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 SCYL1Q96KG9 808 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 FAM161BQ96MY7 647 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 TMX1Q9H3N1 280 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 MRS2Q9HD23 443 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.9□□□□□ -1.46
CD44-213ENST00000525209 PARP2Q9UGN5 583 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 INPP5FQ9Y2H2 1132 aa5.9□□□□□ -1.46
CD44-213ENST00000525209 EXOC5O00471 708 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 PPP1R12AO14974 1030 aaPredicted RBP5.89□□□□□ -1.47
CD44-213ENST00000525209 AMPD3Q01432 767 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 FKBP4Q02790 459 aaKnown RBP eCLIP5.89□□□□□ -1.47
CD44-213ENST00000525209 SF3B2Q13435 895 aaKnown RBP5.89□□□□□ -1.47
CD44-213ENST00000525209 SLFNL1Q499Z3 407 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 PLEKHG4Q58EX7 1191 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 PPARGC1BQ86YN6 1023 aaKnown RBP5.89□□□□□ -1.47
CD44-213ENST00000525209 MCF2L2Q86YR7 1114 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 SULF1Q8IWU6 871 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms