RNA–Protein interactions for RNA: ENST00000524330.1

VPS13B-212, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 218 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-212ENST00000524330 ZCRB1Q8TBF4 217 aaKnown RBP12.58□□□□□ -0.4
VPS13B-212ENST00000524330 LGR6Q9HBX8 967 aa12.58□□□□□ -0.4
VPS13B-212ENST00000524330 COL14A1Q05707 1796 aaKnown RBP12.57□□□□□ -0.4
VPS13B-212ENST00000524330 EIF4A1P60842 406 aaKnown RBP12.57□□□□□ -0.4
VPS13B-212ENST00000524330 HDAC1Q13547 482 aaPredicted RBP12.57□□□□□ -0.4
VPS13B-212ENST00000524330 INTS3Q68E01 1043 aaKnown RBP12.57□□□□□ -0.4
VPS13B-212ENST00000524330 TTC5Q8N0Z6 440 aa12.57□□□□□ -0.4
VPS13B-212ENST00000524330 ZBTB40Q9NUA8 1239 aa12.57□□□□□ -0.4
VPS13B-212ENST00000524330 COL22A1Q8NFW1 1626 aaPredicted RBP12.57□□□□□ -0.4
VPS13B-212ENST00000524330 CABP4P57796 275 aa12.56□□□□□ -0.4
VPS13B-212ENST00000524330 AEBP2Q6ZN18 517 aaPredicted RBP12.56□□□□□ -0.4
VPS13B-212ENST00000524330 SLC52A2Q9HAB3 445 aa12.56□□□□□ -0.4
VPS13B-212ENST00000524330 STRN4Q9NRL3 753 aa12.56□□□□□ -0.4
VPS13B-212ENST00000524330 ZBTB47Q9UFB7 747 aaPredicted RBP12.56□□□□□ -0.4
VPS13B-212ENST00000524330 HDAC5Q9UQL6 1122 aa12.56□□□□□ -0.4
VPS13B-212ENST00000524330 TNNQ9UQP3 1299 aa12.56□□□□□ -0.4
VPS13B-212ENST00000524330 KDM3BQ7LBC6 1761 aa12.56□□□□□ -0.4
VPS13B-212ENST00000524330 PHLPP1O60346 1717 aa12.55□□□□□ -0.4
VPS13B-212ENST00000524330 PKD1L3Q7Z443 1732 aa12.55□□□□□ -0.4
VPS13B-212ENST00000524330 FKBP5Q13451 457 aaPredicted RBP12.55□□□□□ -0.4
VPS13B-212ENST00000524330 KRT24Q2M2I5 525 aa12.55□□□□□ -0.4
VPS13B-212ENST00000524330 CDCA7Q9BWT1 371 aaPredicted RBP12.55□□□□□ -0.4
VPS13B-212ENST00000524330 MEGF6O75095 1541 aa12.55□□□□□ -0.4
VPS13B-212ENST00000524330 ADAMTS7Q9UKP4 1686 aa12.54□□□□□ -0.4
VPS13B-212ENST00000524330 ERVV-2B6SEH9 535 aa12.54□□□□□ -0.4
VPS13B-212ENST00000524330 ZBTB7BO15156 539 aaPredicted RBP12.54□□□□□ -0.4
VPS13B-212ENST00000524330 FLIIQ13045 1269 aa12.54□□□□□ -0.4
VPS13B-212ENST00000524330 GCC1Q96CN9 775 aa12.54□□□□□ -0.4
VPS13B-212ENST00000524330 DBF4Q9UBU7 674 aaPredicted RBP12.54□□□□□ -0.4
VPS13B-212ENST00000524330 PCDHB15Q9Y5E8 787 aa12.54□□□□□ -0.4
VPS13B-212ENST00000524330 SCN11AQ9UI33 1791 aa12.53□□□□□ -0.4
VPS13B-212ENST00000524330 HMMRO75330 724 aa12.53□□□□□ -0.4
VPS13B-212ENST00000524330 DDX58O95786 925 aaKnown RBP12.53□□□□□ -0.4
VPS13B-212ENST00000524330 GNAI3P08754 354 aa12.53□□□□□ -0.4
VPS13B-212ENST00000524330 RPAP2Q8IXW5 612 aaPredicted RBP12.53□□□□□ -0.4
VPS13B-212ENST00000524330 BTG4Q9NY30 223 aa12.53□□□□□ -0.4
VPS13B-212ENST00000524330 VIRMAQ69YN4 1812 aaKnown RBP12.53□□□□□ -0.4
VPS13B-212ENST00000524330 PXDNLA1KZ92 1463 aa12.53□□□□□ -0.4
VPS13B-212ENST00000524330 UBAP1LF5GYI3 381 aa12.52□□□□□ -0.41
VPS13B-212ENST00000524330 IGHDP01880 384 aa12.52□□□□□ -0.41
VPS13B-212ENST00000524330 EIF2S2P20042 333 aaKnown RBP12.52□□□□□ -0.41
VPS13B-212ENST00000524330 FMNL2Q96PY5 1086 aa12.52□□□□□ -0.41
VPS13B-212ENST00000524330 HYPKQ9NX55 129 aa12.52□□□□□ -0.41
VPS13B-212ENST00000524330 ZNF790Q6PG37 636 aa12.51□□□□□ -0.41
VPS13B-212ENST00000524330 LARP1Q6PKG0 1096 aaKnown RBP12.51□□□□□ -0.41
VPS13B-212ENST00000524330 SLC4A10Q6U841 1118 aa12.51□□□□□ -0.41
VPS13B-212ENST00000524330 RBM19Q9Y4C8 960 aaKnown RBP12.51□□□□□ -0.41
VPS13B-212ENST00000524330 SIPA1L3O60292 1781 aaPredicted RBP12.51□□□□□ -0.41
VPS13B-212ENST00000524330 EIF5BO60841 1220 aaKnown RBP12.5□□□□□ -0.41
VPS13B-212ENST00000524330 GIGYF1O75420 1035 aaPredicted RBP12.5□□□□□ -0.41
VPS13B-212ENST00000524330 SNRPA1P09661 255 aaKnown RBP12.5□□□□□ -0.41
VPS13B-212ENST00000524330 RGS3P49796 1198 aa12.5□□□□□ -0.41
VPS13B-212ENST00000524330 PIP4K2BP78356 416 aa12.5□□□□□ -0.41
VPS13B-212ENST00000524330 NKX1-1Q15270 411 aaPredicted RBP12.5□□□□□ -0.41
VPS13B-212ENST00000524330 THRAP3Q9Y2W1 955 aaKnown RBP12.5□□□□□ -0.41
VPS13B-212ENST00000524330 KDM6AO15550 1401 aaPredicted RBP12.5□□□□□ -0.41
VPS13B-212ENST00000524330 MRC1P22897 1456 aa12.5□□□□□ -0.41
VPS13B-212ENST00000524330 CYP27B1O15528 508 aa12.49□□□□□ -0.41
VPS13B-212ENST00000524330 FAM161AQ3B820 660 aa12.49□□□□□ -0.41
VPS13B-212ENST00000524330 SMC5Q8IY18 1101 aa12.49□□□□□ -0.41
VPS13B-212ENST00000524330 NFATC2IPQ8NCF5 419 aa12.49□□□□□ -0.41
VPS13B-212ENST00000524330 NECTIN2Q92692 538 aa12.49□□□□□ -0.41
VPS13B-212ENST00000524330 COL16A1Q07092 1604 aaPredicted RBP12.48□□□□□ -0.41
VPS13B-212ENST00000524330 HEG1Q9ULI3 1381 aa12.48□□□□□ -0.41
VPS13B-212ENST00000524330 ERBB4Q15303 1308 aa12.48□□□□□ -0.41
VPS13B-212ENST00000524330 EXOC5O00471 708 aa12.48□□□□□ -0.41
VPS13B-212ENST00000524330 GNAI2P04899 355 aa12.48□□□□□ -0.41
VPS13B-212ENST00000524330 DDX21Q9NR30 783 aaKnown RBP eCLIP12.48□□□□□ -0.41
VPS13B-212ENST00000524330 PDZRN3Q9UPQ7 1066 aa12.48□□□□□ -0.41
VPS13B-212ENST00000524330 PDE4AP27815 886 aa12.47□□□□□ -0.41
VPS13B-212ENST00000524330 ANP32AP39687 249 aaKnown RBP12.47□□□□□ -0.41
VPS13B-212ENST00000524330 G2E3Q7L622 706 aa12.47□□□□□ -0.41
VPS13B-212ENST00000524330 ANKRD44Q8N8A2 993 aa12.47□□□□□ -0.41
VPS13B-212ENST00000524330 DDX54Q8TDD1 881 aaKnown RBP12.47□□□□□ -0.41
VPS13B-212ENST00000524330 DNAAF4Q8WXU2 420 aa12.47□□□□□ -0.41
VPS13B-212ENST00000524330 SRCIN1Q9C0H9 1055 aa12.47□□□□□ -0.41
VPS13B-212ENST00000524330 CHPF2Q9P2E5 772 aa12.47□□□□□ -0.41
VPS13B-212ENST00000524330 RGS12O14924 1447 aa12.46□□□□□ -0.41
VPS13B-212ENST00000524330 JCADQ9P266 1359 aa12.46□□□□□ -0.41
VPS13B-212ENST00000524330 KCNQ3O43525 872 aa12.46□□□□□ -0.41
VPS13B-212ENST00000524330 ALDH1L1O75891 902 aa12.46□□□□□ -0.41
VPS13B-212ENST00000524330 NEXNQ0ZGT2 675 aa12.46□□□□□ -0.41
VPS13B-212ENST00000524330 TEX13AQ9BXU3 409 aaPredicted RBP12.46□□□□□ -0.41
VPS13B-212ENST00000524330 TMOD3Q9NYL9 352 aa12.46□□□□□ -0.41
VPS13B-212ENST00000524330 USP35Q9P2H5 1018 aa12.46□□□□□ -0.41
VPS13B-212ENST00000524330 ADAMTS2O95450 1211 aa12.45□□□□□ -0.42
VPS13B-212ENST00000524330 UBTFL1P0CB47 393 aaPredicted RBP12.45□□□□□ -0.42
VPS13B-212ENST00000524330 BACH2Q9BYV9 841 aa12.45□□□□□ -0.42
VPS13B-212ENST00000524330 ATP10DQ9P241 1426 aa12.45□□□□□ -0.42
VPS13B-212ENST00000524330 PLCH1Q4KWH8 1693 aa12.45□□□□□ -0.42
VPS13B-212ENST00000524330 NUTM2BA6NNL0 878 aaPredicted RBP12.44□□□□□ -0.42
VPS13B-212ENST00000524330 NUTM2EB1AL46 878 aaPredicted RBP12.44□□□□□ -0.42
VPS13B-212ENST00000524330 F6X3S4 739 aa12.44□□□□□ -0.42
VPS13B-212ENST00000524330 NUCB1Q02818 461 aa12.44□□□□□ -0.42
VPS13B-212ENST00000524330 KSR2Q6VAB6 950 aa12.44□□□□□ -0.42
VPS13B-212ENST00000524330 CHD1LQ86WJ1 897 aa12.44□□□□□ -0.42
VPS13B-212ENST00000524330 NUTM2AQ8IVF1 878 aaPredicted RBP12.44□□□□□ -0.42
VPS13B-212ENST00000524330 UPF2Q9HAU5 1272 aaKnown RBP12.44□□□□□ -0.42
VPS13B-212ENST00000524330 N4BP2Q86UW6 1770 aaPredicted RBP12.43□□□□□ -0.42
VPS13B-212ENST00000524330 SPATA31A6Q5VVP1 1343 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms