RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 IBTKQ9P2D0 1353 aaPredicted RBP12.03□□□□□ -0.48
PDGFRB-207ENST00000520579 STK3Q13188 491 aa12.02□□□□□ -0.48
PDGFRB-207ENST00000520579 SEMA3FQ13275 785 aa12.02□□□□□ -0.48
PDGFRB-207ENST00000520579 CARD10Q9BWT7 1032 aa12.02□□□□□ -0.48
PDGFRB-207ENST00000520579 EGFL6Q8IUX8 553 aa12.02□□□□□ -0.49
PDGFRB-207ENST00000520579 FAM177A1Q8N128 213 aaPredicted RBP12.02□□□□□ -0.49
PDGFRB-207ENST00000520579 ERCC4Q92889 916 aaPredicted RBP12.02□□□□□ -0.49
PDGFRB-207ENST00000520579 PSMD1Q99460 953 aa12.02□□□□□ -0.49
PDGFRB-207ENST00000520579 SPG7Q9UQ90 795 aa12.02□□□□□ -0.49
PDGFRB-207ENST00000520579 PRDM15P57071 1507 aaPredicted RBP12.02□□□□□ -0.49
PDGFRB-207ENST00000520579 ADGRL2O95490 1459 aa12.02□□□□□ -0.49
PDGFRB-207ENST00000520579 ELF2Q15723 593 aa12.02□□□□□ -0.49
PDGFRB-207ENST00000520579 VIRMAQ69YN4 1812 aaKnown RBP12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 TDO2P48775 406 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 KIAA1524Q8TCG1 905 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 CAPN2P17655 700 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 MCM10Q7L590 875 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 FMNL2Q96PY5 1086 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 PHF23Q9BUL5 403 aaPredicted RBP12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 MX1P20591 662 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 UNC5CLQ8IV45 518 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 ZRANB1Q9UGI0 708 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 EMILIN1Q9Y6C2 1016 aa12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 WDR33Q9C0J8 1336 aaKnown RBP12.01□□□□□ -0.49
PDGFRB-207ENST00000520579 RRS1Q15050 365 aaKnown RBP12□□□□□ -0.49
PDGFRB-207ENST00000520579 BICD2Q8TD16 824 aa12□□□□□ -0.49
PDGFRB-207ENST00000520579 API5Q9BZZ5 524 aaKnown RBP12□□□□□ -0.49
PDGFRB-207ENST00000520579 OGFRQ9NZT2 677 aa12□□□□□ -0.49
PDGFRB-207ENST00000520579 ZNF215Q9UL58 517 aaPredicted RBP12□□□□□ -0.49
PDGFRB-207ENST00000520579 CCAR2Q8N163 923 aaKnown RBP12□□□□□ -0.49
PDGFRB-207ENST00000520579 SLC4A2P04920 1241 aa11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 DCTPP1Q9H773 170 aa11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 ANO6Q4KMQ2 910 aa11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 HSP90AB3PQ58FF7 597 aa11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 CT47A1Q5JQC4 288 aaPredicted RBP11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 CWC27Q6UX04 472 aaKnown RBP11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 CLEC17AQ6ZS10 378 aa11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 NEK11Q8NG66 645 aa11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 CD109Q6YHK3 1445 aa11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 DNAJC25Q9H1X3 360 aa11.99□□□□□ -0.49
PDGFRB-207ENST00000520579 USP27XA6NNY8 438 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 SYT1P21579 422 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 PDE1AP54750 535 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 SLC20A2Q08357 652 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 CEP83Q9Y592 693 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 RAPGEF6Q8TEU7 1601 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 ARID4AP29374 1257 aaPredicted RBP11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 IRF6O14896 467 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 STX6O43752 255 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 CCDC192P0DO97 292 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 CEP85Q6P2H3 762 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 FAM184AQ8NB25 1140 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 FAM212AQ96EL1 285 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 PLEKHF1Q96S99 279 aa11.98□□□□□ -0.49
PDGFRB-207ENST00000520579 CCDC141Q6ZP82 1450 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 LIG1P18858 919 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 IL25Q9H293 177 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 ARHGAP5Q13017 1502 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 ADCY10Q96PN6 1610 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 CT47B1P0C2W7 299 aaPredicted RBP11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 DRC1Q96MC2 740 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 ESYT1Q9BSJ8 1104 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 YY1AP1Q9H869 796 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 CABP1Q9NZU7 370 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 CLIP2Q9UDT6 1046 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 ERVK-7P63135 1459 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 GNL2Q13823 731 aaKnown RBP11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 PTPN21Q16825 1174 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 CEP135Q66GS9 1140 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 KRT222Q8N1A0 295 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 TNMDQ9H2S6 317 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 CTNNA3Q9UI47 895 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 USP16Q9Y5T5 823 aa11.97□□□□□ -0.49
PDGFRB-207ENST00000520579 LARGE1O95461 756 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 CASTP20810 708 aaKnown RBP11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 C10orf67Q8IYJ2 551 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 EVC2Q86UK5 1308 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 GJB2P29033 226 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 GNAI1P63096 354 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 ALDH1L2Q3SY69 923 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 G2E3Q7L622 706 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 RNF217Q8TC41 542 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 PIK3R5Q8WYR1 880 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 DDX11Q96FC9 970 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 NUP62CLQ9H1M0 184 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 DACT1Q9NYF0 836 aa11.96□□□□□ -0.49
PDGFRB-207ENST00000520579 FYB1O15117 783 aa11.96□□□□□ -0.5
PDGFRB-207ENST00000520579 ZSCAN22P10073 491 aaPredicted RBP11.96□□□□□ -0.5
PDGFRB-207ENST00000520579 EFCC1Q9HA90 598 aa11.96□□□□□ -0.5
PDGFRB-207ENST00000520579 ZMYM3Q14202 1370 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 SLFN14P0C7P3 912 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 AK2P54819 239 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 KIAA0556O60303 1618 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 ABCC11Q96J66 1382 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 GOLGA6L19H0YKK7 550 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 GYS2P54840 703 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 HOMER1Q86YM7 354 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 NUP160Q12769 1436 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 CCDC172P0C7W6 258 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 UBE2HP62256 183 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms