RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ECM1Q16610 540 aa12.29□□□□□ -0.44
NUP54-215ENST00000514313 PPP1R26Q5T8A7 1209 aaPredicted RBP12.29□□□□□ -0.44
NUP54-215ENST00000514313 MPNDQ8N594 471 aa12.29□□□□□ -0.44
NUP54-215ENST00000514313 SCG3Q8WXD2 468 aaKnown RBP12.29□□□□□ -0.44
NUP54-215ENST00000514313 NPAS4Q8IUM7 802 aa12.28□□□□□ -0.44
NUP54-215ENST00000514313 COL26A1Q96A83 441 aa12.28□□□□□ -0.44
NUP54-215ENST00000514313 TSPAN10Q9H1Z9 355 aaPredicted RBP12.28□□□□□ -0.44
NUP54-215ENST00000514313 ANKRD33BA6NCL7 494 aa12.27□□□□□ -0.45
NUP54-215ENST00000514313 MYT1Q01538 1121 aa12.27□□□□□ -0.45
NUP54-215ENST00000514313 SF3B2Q13435 895 aaKnown RBP12.27□□□□□ -0.45
NUP54-215ENST00000514313 NAA30Q147X3 362 aaPredicted RBP12.27□□□□□ -0.45
NUP54-215ENST00000514313 CYP2U1Q7Z449 544 aa12.27□□□□□ -0.45
NUP54-215ENST00000514313 NR3C2P08235 984 aa12.26□□□□□ -0.45
NUP54-215ENST00000514313 FKBP4Q02790 459 aaKnown RBP eCLIP12.26□□□□□ -0.45
NUP54-215ENST00000514313 HELQQ8TDG4 1101 aa12.26□□□□□ -0.45
NUP54-215ENST00000514313 MAPK1P28482 360 aa12.25□□□□□ -0.45
NUP54-215ENST00000514313 ARHGAP4P98171 946 aa12.25□□□□□ -0.45
NUP54-215ENST00000514313 NR5A1Q13285 461 aa12.25□□□□□ -0.45
NUP54-215ENST00000514313 TRIM52Q96A61 297 aa12.25□□□□□ -0.45
NUP54-215ENST00000514313 BCL2L13Q9BXK5 485 aa12.25□□□□□ -0.45
NUP54-215ENST00000514313 ATAD2Q6PL18 1390 aa12.25□□□□□ -0.45
NUP54-215ENST00000514313 ADD1P35611 737 aaKnown RBP12.24□□□□□ -0.45
NUP54-215ENST00000514313 SLC4A9Q96Q91 983 aa12.24□□□□□ -0.45
NUP54-215ENST00000514313 RAB6BQ9NRW1 208 aa12.24□□□□□ -0.45
NUP54-215ENST00000514313 GNRH1P01148 92 aa12.23□□□□□ -0.45
NUP54-215ENST00000514313 ZNF16P17020 682 aaPredicted RBP12.23□□□□□ -0.45
NUP54-215ENST00000514313 CHMP7Q8WUX9 453 aaPredicted RBP12.23□□□□□ -0.45
NUP54-215ENST00000514313 MRGPRX2Q96LB1 330 aa12.23□□□□□ -0.45
NUP54-215ENST00000514313 DCTN4Q9UJW0 460 aa12.23□□□□□ -0.45
NUP54-215ENST00000514313 WNT7AO00755 349 aa12.22□□□□□ -0.45
NUP54-215ENST00000514313 TBCELQ5QJ74 424 aa12.22□□□□□ -0.45
NUP54-215ENST00000514313 GIPC2Q8TF65 315 aa12.22□□□□□ -0.45
NUP54-215ENST00000514313 ARHGEF10LQ9HCE6 1279 aa12.22□□□□□ -0.45
NUP54-215ENST00000514313 A0A1W2PRU2 124 aa12.21□□□□□ -0.45
NUP54-215ENST00000514313 FOXK2Q01167 660 aa12.21□□□□□ -0.45
NUP54-215ENST00000514313 ESCO1Q5FWF5 840 aa12.21□□□□□ -0.45
NUP54-215ENST00000514313 VTI1AQ96AJ9 217 aa12.21□□□□□ -0.45
NUP54-215ENST00000514313 PPP1R12BO60237 982 aaPredicted RBP12.2□□□□□ -0.46
NUP54-215ENST00000514313 MTFR1Q15390 333 aa12.2□□□□□ -0.46
NUP54-215ENST00000514313 SLC9A9Q8IVB4 645 aa12.2□□□□□ -0.46
NUP54-215ENST00000514313 ASB16Q96NS5 453 aa12.2□□□□□ -0.46
NUP54-215ENST00000514313 PGPEP1Q9NXJ5 209 aa12.2□□□□□ -0.46
NUP54-215ENST00000514313 SCHIP1Q9P0W5 487 aaPredicted RBP12.2□□□□□ -0.46
NUP54-215ENST00000514313 KIAA1522Q9P206 1035 aaPredicted RBP12.2□□□□□ -0.46
NUP54-215ENST00000514313 A6NJY4 79 aa12.19□□□□□ -0.46
NUP54-215ENST00000514313 MRRFQ96E11 262 aaKnown RBP12.19□□□□□ -0.46
NUP54-215ENST00000514313 SAP130Q9H0E3 1048 aa12.19□□□□□ -0.46
NUP54-215ENST00000514313 IL2RAP01589 272 aa12.18□□□□□ -0.46
NUP54-215ENST00000514313 MPSTP25325 297 aa12.18□□□□□ -0.46
NUP54-215ENST00000514313 SMTNP53814 917 aa12.18□□□□□ -0.46
NUP54-215ENST00000514313 EMILIN1Q9Y6C2 1016 aa12.18□□□□□ -0.46
NUP54-215ENST00000514313 NPR3P17342 541 aa12.17□□□□□ -0.46
NUP54-215ENST00000514313 SLC19A1P41440 591 aa12.17□□□□□ -0.46
NUP54-215ENST00000514313 C16orf46Q6P387 395 aa12.17□□□□□ -0.46
NUP54-215ENST00000514313 SPNS2Q8IVW8 549 aa12.17□□□□□ -0.46
NUP54-215ENST00000514313 C2orf49Q9BVC5 232 aaPredicted RBP12.17□□□□□ -0.46
NUP54-215ENST00000514313 USP3Q9Y6I4 520 aa12.17□□□□□ -0.46
NUP54-215ENST00000514313 FAM13AO94988 1023 aa12.15□□□□□ -0.46
NUP54-215ENST00000514313 ADH1AP07327 375 aa12.15□□□□□ -0.46
NUP54-215ENST00000514313 PSMA6P60900 246 aaKnown RBP12.15□□□□□ -0.46
NUP54-215ENST00000514313 TLR1Q15399 786 aa12.15□□□□□ -0.46
NUP54-215ENST00000514313 FBXO33Q7Z6M2 555 aa12.15□□□□□ -0.46
NUP54-215ENST00000514313 ZSCAN29Q8IWY8 852 aaPredicted RBP12.15□□□□□ -0.46
NUP54-215ENST00000514313 STAG2Q8N3U4 1231 aa12.15□□□□□ -0.46
NUP54-215ENST00000514313 XAGE2Q96GT9 111 aa12.15□□□□□ -0.46
NUP54-215ENST00000514313 NNTQ13423 1086 aa12.14□□□□□ -0.47
NUP54-215ENST00000514313 RGL4Q8IZJ4 473 aa12.14□□□□□ -0.47
NUP54-215ENST00000514313 ALDH1A1P00352 501 aa12.13□□□□□ -0.47
NUP54-215ENST00000514313 TAGLNQ01995 201 aaKnown RBP12.13□□□□□ -0.47
NUP54-215ENST00000514313 CBLBQ13191 982 aa12.13□□□□□ -0.47
NUP54-215ENST00000514313 KDF1Q8NAX2 398 aaPredicted RBP12.13□□□□□ -0.47
NUP54-215ENST00000514313 CNKSR1Q969H4 720 aa12.13□□□□□ -0.47
NUP54-215ENST00000514313 QTRT2Q9H974 415 aaKnown RBP12.13□□□□□ -0.47
NUP54-215ENST00000514313 IQSEC3Q9UPP2 1182 aaPredicted RBP12.13□□□□□ -0.47
NUP54-215ENST00000514313 HRH3Q9Y5N1 445 aa12.13□□□□□ -0.47
NUP54-215ENST00000514313 TNFRSF10BO14763 440 aa12.12□□□□□ -0.47
NUP54-215ENST00000514313 COX20Q5RI15 118 aa12.12□□□□□ -0.47
NUP54-215ENST00000514313 SPRYD7Q5W111 196 aa12.12□□□□□ -0.47
NUP54-215ENST00000514313 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.12□□□□□ -0.47
NUP54-215ENST00000514313 IGSF5Q9NSI5 407 aa12.12□□□□□ -0.47
NUP54-215ENST00000514313 ESYT1Q9BSJ8 1104 aa12.11□□□□□ -0.47
NUP54-215ENST00000514313 ZNF326Q5BKZ1 582 aaKnown RBP12.1□□□□□ -0.47
NUP54-215ENST00000514313 ZNF697Q5TEC3 545 aa12.1□□□□□ -0.47
NUP54-215ENST00000514313 POTEAQ6S8J7 498 aa12.1□□□□□ -0.47
NUP54-215ENST00000514313 RBCK1Q9BYM8 510 aa12.1□□□□□ -0.47
NUP54-215ENST00000514313 WASF2Q9Y6W5 498 aa12.1□□□□□ -0.47
NUP54-215ENST00000514313 CDK2AP1O14519 115 aa12.09□□□□□ -0.47
NUP54-215ENST00000514313 EIF1AXP47813 144 aaKnown RBP12.09□□□□□ -0.47
NUP54-215ENST00000514313 CLN3Q13286 438 aa12.09□□□□□ -0.47
NUP54-215ENST00000514313 SH3PXD2AQ5TCZ1 1133 aa12.09□□□□□ -0.47
NUP54-215ENST00000514313 TMC7Q7Z402 723 aa12.09□□□□□ -0.47
NUP54-215ENST00000514313 FHDC1Q9C0D6 1143 aaPredicted RBP12.09□□□□□ -0.47
NUP54-215ENST00000514313 LRFN2Q9ULH4 789 aa12.09□□□□□ -0.47
NUP54-215ENST00000514313 NDUFB5O43674 189 aa12.08□□□□□ -0.48
NUP54-215ENST00000514313 FOXC1Q12948 553 aa12.08□□□□□ -0.48
NUP54-215ENST00000514313 NBPF15Q8N660 670 aa12.08□□□□□ -0.48
NUP54-215ENST00000514313 ITPKCQ96DU7 683 aa12.08□□□□□ -0.48
NUP54-215ENST00000514313 MYO19Q96H55 970 aa12.08□□□□□ -0.48
NUP54-215ENST00000514313 PKD2L1Q9P0L9 805 aa12.08□□□□□ -0.48
NUP54-215ENST00000514313 STIM2Q9P246 746 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms