RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 LRSAM1Q6UWE0 723 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 TBC1D9Q6ZT07 1266 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 CNNM1Q9NRU3 951 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 FAM107BQ9H098 131 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 BIN1O00499 593 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 LIMCH1Q9UPQ0 1083 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 PAXBP1Q9Y5B6 917 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 SLC3A2P08195 630 aaKnown RBP12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 SPA17Q15506 151 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 IMMTQ16891 758 aaKnown RBP12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 ARAP1Q96P48 1450 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 RAB11FIP3O75154 756 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 GSDMDP57764 484 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 UVSSAQ2YD98 709 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 GIMAP6Q6P9H5 292 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 NACAP1Q9BZK3 213 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 DDX19AQ9NUU7 478 aaKnown RBP12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 ANKRD18AQ8IVF6 992 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 SH2B1Q9NRF2 756 aaPredicted RBP12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 BCCIPQ9P287 314 aaKnown RBP eCLIP12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 LRPPRCP42704 1394 aaKnown RBP12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 MCM3P25205 808 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 ZKSCAN5Q9Y2L8 839 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 FYCO1Q9BQS8 1478 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 GTF2A1P52655 376 aaPredicted RBP12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 PIBF1Q8WXW3 757 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 PRAM1Q96QH2 718 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 CABP1Q9NZU7 370 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 CTNNA3Q9UI47 895 aa12.08□□□□□ -0.48
PDLIM3-209ENST00000514142 CFTRP13569 1480 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 KIAA1107Q9UPP5 1409 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 CTR9Q6PD62 1173 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 CTAGE5O15320 804 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 STX6O43752 255 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 EZRP15311 586 aaKnown RBP12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 MICALCLQ6ZW33 695 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 LUZP1Q86V48 1076 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 FSIP1Q8NA03 581 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 ZNF397Q8NF99 534 aaPredicted RBP12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 TTC12Q9H892 705 aaPredicted RBP12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 NKTRP30414 1462 aaKnown RBP12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 NCAPD3P42695 1498 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 DNAAF4Q8WXU2 420 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 V9GYY5 206 aaPredicted RBP12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 DUSP27Q5VZP5 1158 aa12.07□□□□□ -0.48
PDLIM3-209ENST00000514142 PLEKHH1Q9ULM0 1364 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 PLEKHO1Q53GL0 409 aaPredicted RBP12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 GNG11P61952 73 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 IFFO1Q0D2I5 559 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 GLRX3O76003 335 aaKnown RBP12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 MYL6BP14649 208 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 GJB2P29033 226 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 LIG1P18858 919 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 UBE2HP62256 183 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 CCDC186Q7Z3E2 898 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 SLC26A8Q96RN1 970 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 MIS18AQ9NYP9 233 aa12.06□□□□□ -0.48
PDLIM3-209ENST00000514142 FCHSD2O94868 740 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 STX1AQ16623 288 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 CASKIN1Q8WXD9 1431 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 KIF1BPQ96EK5 621 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 NUP88Q99567 741 aaPredicted RBP12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 UBAC1Q9BSL1 405 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 CCDC94Q9BW85 323 aaPredicted RBP12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 ANKRD30BQ9BXX2 1392 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 TRIM27P14373 513 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 PAFAH1B1P43034 410 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 CCDC57Q2TAC2 916 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 ABTB2Q8N961 1025 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 RSPH14Q9UHP6 348 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 NFE2L2Q16236 605 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 BMP2KLQ5H9B9 411 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 CNKSR2Q8WXI2 1034 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 C8orf76Q96K31 380 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 POTEB2H3BUK9 544 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 GBP2P32456 591 aaPredicted RBP12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 ISM2Q6H9L7 571 aa12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 CCDC12Q8WUD4 166 aaPredicted RBP12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 BMP2KQ9NSY1 1161 aaPredicted RBP12.05□□□□□ -0.48
PDLIM3-209ENST00000514142 SPECC1Q5M775 1068 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 SOGA3Q5TF21 947 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 BOLA2Q9H3K6 86 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 PRIM1P49642 420 aaKnown RBP12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 ATP2B2Q01814 1243 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 GTPBP4Q9BZE4 634 aaKnown RBP12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 HFM1A2PYH4 1435 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 TDO2P48775 406 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 RRS1Q15050 365 aaKnown RBP12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 WASF1Q92558 559 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 SPG7Q9UQ90 795 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 SKILP12757 684 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 CCDC178Q5BJE1 867 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 GOPCQ9HD26 462 aa12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 RNF216Q9NWF9 866 aaPredicted RBP12.04□□□□□ -0.48
PDLIM3-209ENST00000514142 CNNM3Q8NE01 707 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 CEP131Q9UPN4 1083 aa12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 HLTFQ14527 1009 aaKnown RBP eCLIP12.03□□□□□ -0.48
PDLIM3-209ENST00000514142 MCM6Q14566 821 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms