RNA–Protein interactions for RNA: ENST00000512332.5

CPNE4-210, Transcript of copine 4, humanhuman

TSL 1 (best) BASIC

Gene CPNE4, Length 2,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-210ENST00000512332 FAM208AQ9UK61 1670 aaKnown RBP11.39□□□□□ -0.59
CPNE4-210ENST00000512332 SALL3Q9BXA9 1300 aa11.39□□□□□ -0.59
CPNE4-210ENST00000512332 SMARCA5O60264 1052 aaPredicted RBP11.39□□□□□ -0.59
CPNE4-210ENST00000512332 HSP90AA1P07900 732 aaKnown RBP11.39□□□□□ -0.59
CPNE4-210ENST00000512332 HOXB7P09629 217 aa11.39□□□□□ -0.59
CPNE4-210ENST00000512332 PDE1AP54750 535 aa11.39□□□□□ -0.59
CPNE4-210ENST00000512332 ANKLE2Q86XL3 938 aa11.39□□□□□ -0.59
CPNE4-210ENST00000512332 RBM42Q9BTD8 480 aaKnown RBP11.39□□□□□ -0.59
CPNE4-210ENST00000512332 FKBP5Q13451 457 aaPredicted RBP11.38□□□□□ -0.59
CPNE4-210ENST00000512332 GOLGA6L3A6NEY3 463 aa11.37□□□□□ -0.59
CPNE4-210ENST00000512332 KCNH5Q8NCM2 988 aa11.37□□□□□ -0.59
CPNE4-210ENST00000512332 PHRF1Q9P1Y6 1649 aaKnown RBP11.37□□□□□ -0.59
CPNE4-210ENST00000512332 ERC2O15083 957 aa11.37□□□□□ -0.59
CPNE4-210ENST00000512332 LRRCC1Q9C099 1032 aa11.37□□□□□ -0.59
CPNE4-210ENST00000512332 SRCIN1Q9C0H9 1055 aa11.37□□□□□ -0.59
CPNE4-210ENST00000512332 NFAT5O94916 1531 aa11.37□□□□□ -0.59
CPNE4-210ENST00000512332 IBTKQ9P2D0 1353 aaPredicted RBP11.37□□□□□ -0.59
CPNE4-210ENST00000512332 NUTM2GQ5VZR2 741 aa11.36□□□□□ -0.59
CPNE4-210ENST00000512332 STAP2Q9UGK3 403 aa11.36□□□□□ -0.59
CPNE4-210ENST00000512332 ADGRL3Q9HAR2 1447 aa11.36□□□□□ -0.59
CPNE4-210ENST00000512332 MED1Q15648 1581 aaPredicted RBP11.36□□□□□ -0.59
CPNE4-210ENST00000512332 USP44Q9H0E7 712 aa11.36□□□□□ -0.59
CPNE4-210ENST00000512332 CWC22Q9HCG8 908 aaKnown RBP11.36□□□□□ -0.59
CPNE4-210ENST00000512332 AOX1Q06278 1338 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 ST18O60284 1047 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 FAM43AQ8N2R8 423 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 LTN1O94822 1766 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 APBB1O00213 710 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 EPB41L2O43491 1005 aaKnown RBP11.35□□□□□ -0.59
CPNE4-210ENST00000512332 XRCC6P12956 609 aaKnown RBP eCLIP11.35□□□□□ -0.59
CPNE4-210ENST00000512332 MRE11P49959 708 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 NUCB2P80303 420 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 HDGFL1Q5TGJ6 251 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 SSH3Q8TE77 659 aa11.35□□□□□ -0.59
CPNE4-210ENST00000512332 ZNF142P52746 1687 aaPredicted RBP11.34□□□□□ -0.59
CPNE4-210ENST00000512332 MX1P20591 662 aa11.34□□□□□ -0.59
CPNE4-210ENST00000512332 NBPF6Q5VWK0 638 aa11.34□□□□□ -0.59
CPNE4-210ENST00000512332 IL17RAQ96F46 866 aa11.34□□□□□ -0.59
CPNE4-210ENST00000512332 LTV1Q96GA3 475 aaPredicted RBP11.34□□□□□ -0.59
CPNE4-210ENST00000512332 NBPF4Q96M43 638 aa11.34□□□□□ -0.59
CPNE4-210ENST00000512332 EXOC6BQ9Y2D4 811 aa11.34□□□□□ -0.59
CPNE4-210ENST00000512332 PNMA6EA0A0J9YXQ4 647 aa11.33□□□□□ -0.59
CPNE4-210ENST00000512332 EIF4A1P60842 406 aaKnown RBP11.33□□□□□ -0.59
CPNE4-210ENST00000512332 NCAPD2Q15021 1401 aa11.33□□□□□ -0.6
CPNE4-210ENST00000512332 GOLGA6L22H0YM25 854 aa11.33□□□□□ -0.6
CPNE4-210ENST00000512332 RAB11FIP3O75154 756 aa11.33□□□□□ -0.6
CPNE4-210ENST00000512332 UBTFL1P0CB47 393 aaPredicted RBP11.33□□□□□ -0.6
CPNE4-210ENST00000512332 PSME1Q06323 249 aa11.33□□□□□ -0.6
CPNE4-210ENST00000512332 AMOTQ4VCS5 1084 aa11.33□□□□□ -0.6
CPNE4-210ENST00000512332 AKAP4Q5JQC9 854 aa11.33□□□□□ -0.6
CPNE4-210ENST00000512332 OVOS2A0A0G2JMS6 1433 aa11.33□□□□□ -0.6
CPNE4-210ENST00000512332 TUBGCP6Q96RT7 1819 aa11.33□□□□□ -0.6
CPNE4-210ENST00000512332 CYP2E1P05181 493 aaPredicted RBP11.32□□□□□ -0.6
CPNE4-210ENST00000512332 ANAPC15P60006 121 aa11.32□□□□□ -0.6
CPNE4-210ENST00000512332 POLA2Q14181 598 aa11.32□□□□□ -0.6
CPNE4-210ENST00000512332 GZF1Q9H116 711 aaPredicted RBP11.32□□□□□ -0.6
CPNE4-210ENST00000512332 LRRFIP2Q9Y608 721 aaKnown RBP11.32□□□□□ -0.6
CPNE4-210ENST00000512332 MCM2P49736 904 aa11.32□□□□□ -0.6
CPNE4-210ENST00000512332 C14orf37Q86TY3 774 aa11.32□□□□□ -0.6
CPNE4-210ENST00000512332 ESYT1Q9BSJ8 1104 aa11.32□□□□□ -0.6
CPNE4-210ENST00000512332 KDM3BQ7LBC6 1761 aa11.32□□□□□ -0.6
CPNE4-210ENST00000512332 PLEKHO1Q53GL0 409 aaPredicted RBP11.31□□□□□ -0.6
CPNE4-210ENST00000512332 LMO7Q8WWI1 1683 aa11.31□□□□□ -0.6
CPNE4-210ENST00000512332 SETD1BQ9UPS6 1966 aaKnown RBP11.31□□□□□ -0.6
CPNE4-210ENST00000512332 SSFA2P28290 1259 aa11.31□□□□□ -0.6
CPNE4-210ENST00000512332 ESCO1Q5FWF5 840 aa11.31□□□□□ -0.6
CPNE4-210ENST00000512332 ARHGEF25Q86VW2 580 aa11.31□□□□□ -0.6
CPNE4-210ENST00000512332 USHBP1Q8N6Y0 703 aa11.31□□□□□ -0.6
CPNE4-210ENST00000512332 NECTIN2Q92692 538 aa11.31□□□□□ -0.6
CPNE4-210ENST00000512332 PHAXQ9H814 394 aaKnown RBP11.31□□□□□ -0.6
CPNE4-210ENST00000512332 RTN4Q9NQC3 1192 aaKnown RBP11.31□□□□□ -0.6
CPNE4-210ENST00000512332 LMTK3Q96Q04 1460 aa11.3□□□□□ -0.6
CPNE4-210ENST00000512332 SLIT3O75094 1523 aa11.3□□□□□ -0.6
CPNE4-210ENST00000512332 BAG4O95429 457 aaKnown RBP11.3□□□□□ -0.6
CPNE4-210ENST00000512332 CHMLP26374 656 aa11.3□□□□□ -0.6
CPNE4-210ENST00000512332 LGR6Q9HBX8 967 aa11.3□□□□□ -0.6
CPNE4-210ENST00000512332 FOXD4L1Q9NU39 408 aa11.3□□□□□ -0.6
CPNE4-210ENST00000512332 MCCP23508 829 aa11.29□□□□□ -0.6
CPNE4-210ENST00000512332 KLHL40Q2TBA0 621 aa11.29□□□□□ -0.6
CPNE4-210ENST00000512332 BEND3Q5T5X7 828 aa11.29□□□□□ -0.6
CPNE4-210ENST00000512332 GRPEL1Q9HAV7 217 aa11.29□□□□□ -0.6
CPNE4-210ENST00000512332 GCP02774 474 aa11.29□□□□□ -0.6
CPNE4-210ENST00000512332 HSP90AB4PQ58FF6 505 aa11.29□□□□□ -0.6
CPNE4-210ENST00000512332 DNAAF4Q8WXU2 420 aa11.29□□□□□ -0.6
CPNE4-210ENST00000512332 HEG1Q9ULI3 1381 aa11.29□□□□□ -0.6
CPNE4-210ENST00000512332 MST1RQ04912 1400 aa11.28□□□□□ -0.6
CPNE4-210ENST00000512332 TEFQ10587 303 aa11.28□□□□□ -0.6
CPNE4-210ENST00000512332 MTX1Q13505 466 aa11.28□□□□□ -0.6
CPNE4-210ENST00000512332 PPP1R42Q7Z4L9 355 aa11.28□□□□□ -0.6
CPNE4-210ENST00000512332 BTBD11A6QL63 1104 aa11.28□□□□□ -0.6
CPNE4-210ENST00000512332 ZNF530Q6P9A1 599 aaPredicted RBP11.28□□□□□ -0.6
CPNE4-210ENST00000512332 KIF1BPQ96EK5 621 aa11.28□□□□□ -0.6
CPNE4-210ENST00000512332 CHPF2Q9P2E5 772 aa11.28□□□□□ -0.6
CPNE4-210ENST00000512332 DBF4Q9UBU7 674 aaPredicted RBP11.28□□□□□ -0.6
CPNE4-210ENST00000512332 HDAC5Q9UQL6 1122 aa11.28□□□□□ -0.6
CPNE4-210ENST00000512332 RNMTO43148 476 aaKnown RBP11.27□□□□□ -0.61
CPNE4-210ENST00000512332 RHPN1Q8TCX5 695 aa11.27□□□□□ -0.61
CPNE4-210ENST00000512332 NPHP4O75161 1426 aaPredicted RBP11.27□□□□□ -0.61
CPNE4-210ENST00000512332 PI4KAP2A4QPH2 592 aa11.27□□□□□ -0.61
CPNE4-210ENST00000512332 SURF6O75683 361 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms