RNA–Protein interactions for RNA: ENST00000509084.1

RFC1-211, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 483 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-211ENST00000509084 CYP27B1O15528 508 aa13.49□□□□□ -0.25
RFC1-211ENST00000509084 TEFQ10587 303 aa13.49□□□□□ -0.25
RFC1-211ENST00000509084 DCTN1Q14203 1278 aa13.49□□□□□ -0.25
RFC1-211ENST00000509084 DDB1Q16531 1140 aa13.49□□□□□ -0.25
RFC1-211ENST00000509084 CDCA7LQ96GN5 454 aa13.49□□□□□ -0.25
RFC1-211ENST00000509084 GJD4Q96KN9 370 aaPredicted RBP13.49□□□□□ -0.25
RFC1-211ENST00000509084 MRC1P22897 1456 aa13.48□□□□□ -0.25
RFC1-211ENST00000509084 RNMTO43148 476 aaKnown RBP13.48□□□□□ -0.25
RFC1-211ENST00000509084 NKX1-1Q15270 411 aaPredicted RBP13.48□□□□□ -0.25
RFC1-211ENST00000509084 IL17REQ8NFR9 667 aa13.48□□□□□ -0.25
RFC1-211ENST00000509084 THUMPD2Q9BTF0 503 aaKnown RBP13.48□□□□□ -0.25
RFC1-211ENST00000509084 KDM6AO15550 1401 aaPredicted RBP13.47□□□□□ -0.25
RFC1-211ENST00000509084 FANCIQ9NVI1 1328 aa13.47□□□□□ -0.25
RFC1-211ENST00000509084 CT47B1P0C2W7 299 aaPredicted RBP13.47□□□□□ -0.25
RFC1-211ENST00000509084 ZNF853P0CG23 659 aa13.47□□□□□ -0.25
RFC1-211ENST00000509084 SIPA1L3O60292 1781 aaPredicted RBP13.46□□□□□ -0.25
RFC1-211ENST00000509084 TAF7Q15545 349 aaPredicted RBP13.46□□□□□ -0.25
RFC1-211ENST00000509084 FAM98CQ17RN3 349 aaKnown RBP13.46□□□□□ -0.25
RFC1-211ENST00000509084 MPRIPQ6WCQ1 1025 aa13.46□□□□□ -0.25
RFC1-211ENST00000509084 CHL1O00533 1208 aa13.45□□□□□ -0.26
RFC1-211ENST00000509084 DDX54Q8TDD1 881 aaKnown RBP13.45□□□□□ -0.26
RFC1-211ENST00000509084 QTRT2Q9H974 415 aaKnown RBP13.45□□□□□ -0.26
RFC1-211ENST00000509084 TSPYL4Q9UJ04 414 aa13.45□□□□□ -0.26
RFC1-211ENST00000509084 LAS1LQ9Y4W2 734 aaKnown RBP13.45□□□□□ -0.26
RFC1-211ENST00000509084 A0A0G2JS52 829 aa13.44□□□□□ -0.26
RFC1-211ENST00000509084 ERVV-2B6SEH9 535 aa13.44□□□□□ -0.26
RFC1-211ENST00000509084 MYT1Q01538 1121 aa13.44□□□□□ -0.26
RFC1-211ENST00000509084 LGR6Q9HBX8 967 aa13.44□□□□□ -0.26
RFC1-211ENST00000509084 MBIPQ9NS73 344 aa13.44□□□□□ -0.26
RFC1-211ENST00000509084 SOS1Q07889 1333 aaPredicted RBP13.43□□□□□ -0.26
RFC1-211ENST00000509084 KDM3BQ7LBC6 1761 aa13.43□□□□□ -0.26
RFC1-211ENST00000509084 ONECUT3O60422 494 aaPredicted RBP13.43□□□□□ -0.26
RFC1-211ENST00000509084 TSR2Q969E8 191 aaKnown RBP13.43□□□□□ -0.26
RFC1-211ENST00000509084 ZNF428Q96B54 188 aa13.43□□□□□ -0.26
RFC1-211ENST00000509084 SLC52A2Q9HAB3 445 aa13.43□□□□□ -0.26
RFC1-211ENST00000509084 CABP4P57796 275 aa13.42□□□□□ -0.26
RFC1-211ENST00000509084 RBM6P78332 1123 aaKnown RBP13.42□□□□□ -0.26
RFC1-211ENST00000509084 TOGARAM1Q9Y4F4 1720 aa13.42□□□□□ -0.26
RFC1-211ENST00000509084 BTBD11A6QL63 1104 aa13.41□□□□□ -0.26
RFC1-211ENST00000509084 RCAN3Q9UKA8 241 aa13.41□□□□□ -0.26
RFC1-211ENST00000509084 BCL9O00512 1426 aa13.4□□□□□ -0.26
RFC1-211ENST00000509084 DOT1LQ8TEK3 1739 aa13.4□□□□□ -0.26
RFC1-211ENST00000509084 EXOSC9Q06265 439 aaKnown RBP13.4□□□□□ -0.26
RFC1-211ENST00000509084 CHMP4AQ9BY43 222 aa13.4□□□□□ -0.26
RFC1-211ENST00000509084 PAPPAQ13219 1627 aa13.39□□□□□ -0.27
RFC1-211ENST00000509084 TMOD3Q9NYL9 352 aa13.39□□□□□ -0.27
RFC1-211ENST00000509084 HOXB7P09629 217 aa13.38□□□□□ -0.27
RFC1-211ENST00000509084 TWISTNBQ3B726 338 aaPredicted RBP13.38□□□□□ -0.27
RFC1-211ENST00000509084 SEPT12Q8IYM1 358 aa13.38□□□□□ -0.27
RFC1-211ENST00000509084 TTC5Q8N0Z6 440 aa13.38□□□□□ -0.27
RFC1-211ENST00000509084 MARCH10Q8NA82 808 aaPredicted RBP13.38□□□□□ -0.27
RFC1-211ENST00000509084 NFATC2IPQ8NCF5 419 aa13.38□□□□□ -0.27
RFC1-211ENST00000509084 ITGB4P16144 1822 aa13.37□□□□□ -0.27
RFC1-211ENST00000509084 RXRBP28702 533 aa13.37□□□□□ -0.27
RFC1-211ENST00000509084 ZNF790Q6PG37 636 aa13.37□□□□□ -0.27
RFC1-211ENST00000509084 UBR2Q8IWV8 1755 aa13.36□□□□□ -0.27
RFC1-211ENST00000509084 EIF4A1P60842 406 aaKnown RBP13.36□□□□□ -0.27
RFC1-211ENST00000509084 ALDH1L2Q3SY69 923 aa13.36□□□□□ -0.27
RFC1-211ENST00000509084 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.36□□□□□ -0.27
RFC1-211ENST00000509084 MIS18AQ9NYP9 233 aa13.36□□□□□ -0.27
RFC1-211ENST00000509084 NHSQ6T4R5 1651 aa13.35□□□□□ -0.27
RFC1-211ENST00000509084 VAMP4O75379 141 aa13.34□□□□□ -0.27
RFC1-211ENST00000509084 RARSP54136 660 aaKnown RBP13.34□□□□□ -0.27
RFC1-211ENST00000509084 MKRN4PQ13434 485 aaPredicted RBP13.34□□□□□ -0.27
RFC1-211ENST00000509084 KRT27Q7Z3Y8 459 aa13.34□□□□□ -0.27
RFC1-211ENST00000509084 C8orf58Q8NAV2 365 aa13.34□□□□□ -0.27
RFC1-211ENST00000509084 FMNL2Q96PY5 1086 aa13.34□□□□□ -0.27
RFC1-211ENST00000509084 KIF16BQ96L93 1317 aa13.34□□□□□ -0.27
RFC1-211ENST00000509084 HEG1Q9ULI3 1381 aa13.33□□□□□ -0.27
RFC1-211ENST00000509084 LAMB4A4D0S4 1761 aa13.33□□□□□ -0.28
RFC1-211ENST00000509084 TSPYL6Q8N831 410 aa13.33□□□□□ -0.28
RFC1-211ENST00000509084 SYTL4Q96C24 671 aaPredicted RBP13.33□□□□□ -0.28
RFC1-211ENST00000509084 SUPT16HQ9Y5B9 1047 aaKnown RBP13.33□□□□□ -0.28
RFC1-211ENST00000509084 RNF123Q5XPI4 1314 aa13.33□□□□□ -0.28
RFC1-211ENST00000509084 KCPQ6ZWJ8 1503 aa13.33□□□□□ -0.28
RFC1-211ENST00000509084 BRWD3Q6RI45 1802 aa13.32□□□□□ -0.28
RFC1-211ENST00000509084 RGS12O14924 1447 aa13.32□□□□□ -0.28
RFC1-211ENST00000509084 NEFLP07196 543 aa13.32□□□□□ -0.28
RFC1-211ENST00000509084 PRIM1P49642 420 aaKnown RBP13.32□□□□□ -0.28
RFC1-211ENST00000509084 SLC39A6Q13433 755 aa13.32□□□□□ -0.28
RFC1-211ENST00000509084 CCDC30Q5VVM6 783 aa13.32□□□□□ -0.28
RFC1-211ENST00000509084 PIGBQ92521 554 aa13.32□□□□□ -0.28
RFC1-211ENST00000509084 SMARCC1Q92922 1105 aaPredicted RBP13.32□□□□□ -0.28
RFC1-211ENST00000509084 SMC4Q9NTJ3 1288 aa13.32□□□□□ -0.28
RFC1-211ENST00000509084 RGS17Q9UGC6 210 aaPredicted RBP13.32□□□□□ -0.28
RFC1-211ENST00000509084 ELL2O00472 640 aaPredicted RBP13.31□□□□□ -0.28
RFC1-211ENST00000509084 KCNQ3O43525 872 aa13.31□□□□□ -0.28
RFC1-211ENST00000509084 GIGYF1O75420 1035 aaPredicted RBP13.31□□□□□ -0.28
RFC1-211ENST00000509084 SNRPA1P09661 255 aaKnown RBP13.31□□□□□ -0.28
RFC1-211ENST00000509084 BRPF1P55201 1214 aaPredicted RBP13.31□□□□□ -0.28
RFC1-211ENST00000509084 RRP1P56182 461 aaKnown RBP13.31□□□□□ -0.28
RFC1-211ENST00000509084 KRT24Q2M2I5 525 aa13.31□□□□□ -0.28
RFC1-211ENST00000509084 FAM196AQ6ZSG2 479 aa13.31□□□□□ -0.28
RFC1-211ENST00000509084 STK31Q9BXU1 1019 aa13.31□□□□□ -0.28
RFC1-211ENST00000509084 SBF2Q86WG5 1849 aa13.3□□□□□ -0.28
RFC1-211ENST00000509084 HDGFL1Q5TGJ6 251 aa13.3□□□□□ -0.28
RFC1-211ENST00000509084 POTEAQ6S8J7 498 aa13.3□□□□□ -0.28
RFC1-211ENST00000509084 VSIG10Q8N0Z9 540 aa13.3□□□□□ -0.28
RFC1-211ENST00000509084 AKT1S1Q96B36 256 aa13.3□□□□□ -0.28
RFC1-211ENST00000509084 ACSBG1Q96GR2 724 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms