RNA–Protein interactions for RNA: ENST00000508756.2

CHD1-205, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 724 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-205ENST00000508756 USP17L13C9JLJ4 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L12C9JPN9 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L11C9JVI0 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L21D6R901 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L18D6R9N7 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L22D6RA61 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L17D6RBQ6 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L19D6RCP7 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L20D6RJB6 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 RNF144AP50876 292 aaPredicted RBP14.01□□□□□ -0.17
CHD1-205ENST00000508756 USP17L24Q0WX57 530 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 PTK7Q13308 1070 aa14.01□□□□□ -0.17
CHD1-205ENST00000508756 WASLO00401 505 aaPredicted RBP14□□□□□ -0.17
CHD1-205ENST00000508756 CENPCQ03188 943 aa14□□□□□ -0.17
CHD1-205ENST00000508756 ZNF358Q9NW07 568 aa14□□□□□ -0.17
CHD1-205ENST00000508756 FAM196BA6NMK8 535 aa13.99□□□□□ -0.17
CHD1-205ENST00000508756 DKK1O94907 266 aa13.99□□□□□ -0.17
CHD1-205ENST00000508756 SIX5Q8N196 739 aa13.99□□□□□ -0.17
CHD1-205ENST00000508756 GPC1P35052 558 aa13.98□□□□□ -0.17
CHD1-205ENST00000508756 TLR1Q15399 786 aa13.98□□□□□ -0.17
CHD1-205ENST00000508756 SLC27A3Q5K4L6 730 aa13.98□□□□□ -0.17
CHD1-205ENST00000508756 PBXIP1Q96AQ6 731 aa13.98□□□□□ -0.17
CHD1-205ENST00000508756 FHDC1Q9C0D6 1143 aaPredicted RBP13.98□□□□□ -0.17
CHD1-205ENST00000508756 SFI1A8K8P3 1242 aa13.97□□□□□ -0.17
CHD1-205ENST00000508756 PRICKLE2Q7Z3G6 844 aa13.97□□□□□ -0.17
CHD1-205ENST00000508756 GRIP2Q9C0E4 1043 aa13.96□□□□□ -0.17
CHD1-205ENST00000508756 DPYDQ12882 1025 aa13.95□□□□□ -0.18
CHD1-205ENST00000508756 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.95□□□□□ -0.18
CHD1-205ENST00000508756 LYSMD3Q7Z3D4 306 aa13.95□□□□□ -0.18
CHD1-205ENST00000508756 SMTNP53814 917 aa13.94□□□□□ -0.18
CHD1-205ENST00000508756 ANKMY2Q8IV38 441 aa13.94□□□□□ -0.18
CHD1-205ENST00000508756 SLC4A9Q96Q91 983 aa13.94□□□□□ -0.18
CHD1-205ENST00000508756 ZSCAN10Q96SZ4 725 aaPredicted RBP13.94□□□□□ -0.18
CHD1-205ENST00000508756 RBM19Q9Y4C8 960 aaKnown RBP13.94□□□□□ -0.18
CHD1-205ENST00000508756 RHOQP17081 205 aa13.93□□□□□ -0.18
CHD1-205ENST00000508756 ARXQ96QS3 562 aa13.93□□□□□ -0.18
CHD1-205ENST00000508756 BACH1O14867 736 aa13.92□□□□□ -0.18
CHD1-205ENST00000508756 NOVA2Q9UNW9 492 aaKnown RBP13.92□□□□□ -0.18
CHD1-205ENST00000508756 A6NJY4 79 aa13.91□□□□□ -0.18
CHD1-205ENST00000508756 SEC13P55735 322 aa13.91□□□□□ -0.18
CHD1-205ENST00000508756 POU4F2Q12837 409 aa13.91□□□□□ -0.18
CHD1-205ENST00000508756 TNS4Q8IZW8 715 aa13.91□□□□□ -0.18
CHD1-205ENST00000508756 TSEN2Q8NCE0 465 aaKnown RBP13.91□□□□□ -0.18
CHD1-205ENST00000508756 ZMIZ1Q9ULJ6 1067 aa13.91□□□□□ -0.18
CHD1-205ENST00000508756 USP3Q9Y6I4 520 aa13.91□□□□□ -0.18
CHD1-205ENST00000508756 ATG7O95352 703 aa13.9□□□□□ -0.18
CHD1-205ENST00000508756 TMEM214Q6NUQ4 689 aaKnown RBP13.9□□□□□ -0.18
CHD1-205ENST00000508756 EPHA4P54764 986 aa13.89□□□□□ -0.19
CHD1-205ENST00000508756 MTFR1Q15390 333 aa13.89□□□□□ -0.19
CHD1-205ENST00000508756 SPATA31C2B4DYI2 1134 aa13.88□□□□□ -0.19
CHD1-205ENST00000508756 PTSQ03393 145 aa13.88□□□□□ -0.19
CHD1-205ENST00000508756 PPARGC1BQ86YN6 1023 aaKnown RBP13.88□□□□□ -0.19
CHD1-205ENST00000508756 STK32AQ8WU08 396 aa13.88□□□□□ -0.19
CHD1-205ENST00000508756 M0R2N6 131 aa13.87□□□□□ -0.19
CHD1-205ENST00000508756 LGR5O75473 907 aa13.87□□□□□ -0.19
CHD1-205ENST00000508756 NBPF10Q6P3W6 841 aaKnown RBP13.87□□□□□ -0.19
CHD1-205ENST00000508756 NBPF15Q8N660 670 aa13.87□□□□□ -0.19
CHD1-205ENST00000508756 FAM200AQ8TCP9 573 aa13.87□□□□□ -0.19
CHD1-205ENST00000508756 SCHIP1Q9P0W5 487 aaPredicted RBP13.87□□□□□ -0.19
CHD1-205ENST00000508756 IQSEC3Q9UPP2 1182 aaPredicted RBP13.87□□□□□ -0.19
CHD1-205ENST00000508756 PPP1R15AO75807 674 aaPredicted RBP13.86□□□□□ -0.19
CHD1-205ENST00000508756 GTF2E1P29083 439 aaPredicted RBP13.86□□□□□ -0.19
CHD1-205ENST00000508756 PHKA2P46019 1235 aa13.86□□□□□ -0.19
CHD1-205ENST00000508756 ELOAQ14241 798 aaKnown RBP13.86□□□□□ -0.19
CHD1-205ENST00000508756 GNASQ5JWF2 1037 aa13.86□□□□□ -0.19
CHD1-205ENST00000508756 TBCELQ5QJ74 424 aa13.86□□□□□ -0.19
CHD1-205ENST00000508756 C4orf17Q53FE4 359 aa13.85□□□□□ -0.19
CHD1-205ENST00000508756 TAS1R3Q7RTX0 852 aa13.85□□□□□ -0.19
CHD1-205ENST00000508756 RHBDD1Q8TEB9 315 aa13.85□□□□□ -0.19
CHD1-205ENST00000508756 SENP3-EIF4A1A0A087X0R7 540 aa13.84□□□□□ -0.19
CHD1-205ENST00000508756 CDK2AP1O14519 115 aa13.84□□□□□ -0.19
CHD1-205ENST00000508756 FOXK2Q01167 660 aa13.84□□□□□ -0.19
CHD1-205ENST00000508756 SLC9A9Q8IVB4 645 aa13.84□□□□□ -0.19
CHD1-205ENST00000508756 ZNF295-AS1Q8N0V1 137 aa13.83□□□□□ -0.2
CHD1-205ENST00000508756 HINFPQ9BQA5 517 aa13.83□□□□□ -0.2
CHD1-205ENST00000508756 TSPAN10Q9H1Z9 355 aaPredicted RBP13.83□□□□□ -0.2
CHD1-205ENST00000508756 TMEM164Q5U3C3 297 aa13.82□□□□□ -0.2
CHD1-205ENST00000508756 SLC35F4A4IF30 521 aa13.81□□□□□ -0.2
CHD1-205ENST00000508756 PLA2G4AP47712 749 aa13.81□□□□□ -0.2
CHD1-205ENST00000508756 VEGFBP49765 207 aa13.8□□□□□ -0.2
CHD1-205ENST00000508756 CCDC155Q8N6L0 562 aa13.8□□□□□ -0.2
CHD1-205ENST00000508756 NIFKQ9BYG3 293 aaKnown RBP13.8□□□□□ -0.2
CHD1-205ENST00000508756 TIMMDC1Q9NPL8 285 aa13.8□□□□□ -0.2
CHD1-205ENST00000508756 CABP1Q9NZU7 370 aa13.8□□□□□ -0.2
CHD1-205ENST00000508756 WDR44Q5JSH3 913 aa13.79□□□□□ -0.2
CHD1-205ENST00000508756 GAS2L2Q8NHY3 880 aa13.79□□□□□ -0.2
CHD1-205ENST00000508756 PARP3Q9Y6F1 533 aa13.79□□□□□ -0.2
CHD1-205ENST00000508756 FAM69CQ0P6D2 419 aa13.78□□□□□ -0.2
CHD1-205ENST00000508756 ZDHHC1Q8WTX9 485 aa13.78□□□□□ -0.2
CHD1-205ENST00000508756 NXF1Q9UBU9 619 aaKnown RBP13.78□□□□□ -0.2
CHD1-205ENST00000508756 ACIN1Q9UKV3 1341 aaKnown RBP13.78□□□□□ -0.2
CHD1-205ENST00000508756 C21orf2O43822 256 aa13.77□□□□□ -0.21
CHD1-205ENST00000508756 PPFIA3O75145 1194 aa13.77□□□□□ -0.21
CHD1-205ENST00000508756 SCG3Q8WXD2 468 aaKnown RBP13.77□□□□□ -0.21
CHD1-205ENST00000508756 DYRK1BQ9Y463 629 aa13.76□□□□□ -0.21
CHD1-205ENST00000508756 ZNF775Q96BV0 537 aaPredicted RBP13.75□□□□□ -0.21
CHD1-205ENST00000508756 GAS2L1Q99501 681 aaPredicted RBP13.75□□□□□ -0.21
CHD1-205ENST00000508756 ATAD2Q6PL18 1390 aa13.74□□□□□ -0.21
CHD1-205ENST00000508756 PPP1R12BO60237 982 aaPredicted RBP13.74□□□□□ -0.21
CHD1-205ENST00000508756 SWI5Q1ZZU3 235 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms