RNA–Protein interactions for RNA: ENST00000508474.5

UBE2D3-224, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 4,819 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-224ENST00000508474 SPECC1LQ69YQ0 1117 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 NBPF11Q86T75 865 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 TTC5Q8N0Z6 440 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 WASF1Q92558 559 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 NAA15Q9BXJ9 866 aaKnown RBP8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 CEP131Q9UPN4 1083 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 PRXQ9BXM0 1461 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 EBAG9O00559 213 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 CCDC175P0C221 793 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 SSR1P43307 286 aaKnown RBP8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 CKAP2LQ8IYA6 745 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 MICALL1Q8N3F8 863 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 CEP112Q8N8E3 955 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 PIBF1Q8WXW3 757 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 ZNF830Q96NB3 372 aaPredicted RBP8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 NEUROD6Q96NK8 337 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 CFTRP13569 1480 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 SLC4A2P04920 1241 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 NEFHP12036 1026 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 EHBP1Q8NDI1 1231 aa8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 RBM28Q9NW13 759 aaKnown RBP8.51□□□□□ -1.05
UBE2D3-224ENST00000508474 HMGB2P26583 209 aaKnown RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 ZNF445P59923 1031 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 GNG11P61952 73 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 CKAP4Q07065 602 aaKnown RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 TTC12Q9H892 705 aaPredicted RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 CTNNA3Q9UI47 895 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 CLGNO14967 610 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 ZSCAN22P10073 491 aaPredicted RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 C10orf67Q8IYJ2 551 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 GOLGA1Q92805 767 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 ZNF500O60304 480 aaPredicted RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 OPA1O60313 960 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 USO1O60763 962 aaKnown RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 FCHSD2O94868 740 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 EIF5P55010 431 aaKnown RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 GBP6Q6ZN66 633 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 CCAR1Q8IX12 1150 aaKnown RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 GCOM1H8Y6P7 765 aaPredicted RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 KDM4AO75164 1064 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 YEATS4O95619 227 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 MYZAPP0CAP1 466 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 ANAPC15P60006 121 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 CWC27Q6UX04 472 aaKnown RBP8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 RIC3Q7Z5B4 369 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 FERMT3Q86UX7 667 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 PLCD3Q8N3E9 789 aa8.5□□□□□ -1.05
UBE2D3-224ENST00000508474 NUCB1Q02818 461 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 DMTNQ08495 405 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 NUTM2DQ5VT03 806 aaPredicted RBP8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 CCDC12Q8WUD4 166 aaPredicted RBP8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 GLRX3O76003 335 aaKnown RBP8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 CDK5RAP3Q96JB5 506 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 TBC1D2BQ9UPU7 963 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 SUPT6HQ7KZ85 1726 aaKnown RBP8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 FGD5Q6ZNL6 1462 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 CTAGE15A4D2H0 777 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 HSF2BPO75031 334 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 HMGB1P09429 215 aaKnown RBP8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 CTAGE8P0CG41 777 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 SYCP1Q15431 976 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 CTAGE6Q86UF2 777 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 CTAGE4Q8IX94 777 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 SSH1Q8WYL5 1049 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 RAI14Q9P0K7 980 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 A0A1B0GUA9 196 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 ATP2B1P20020 1258 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 TMPOP42166 694 aaKnown RBP8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 PPM1EQ8WY54 764 aa8.49□□□□□ -1.05
UBE2D3-224ENST00000508474 ZNF644Q9H582 1327 aaPredicted RBP8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 SLC3A2P08195 630 aaKnown RBP8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 TTC22Q5TAA0 569 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 TMX3Q96JJ7 454 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 ZSCAN16Q9H4T2 348 aaPredicted RBP8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 PRM3Q9NNZ6 103 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 GJB2P29033 226 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 NCBP3Q53F19 620 aaKnown RBP8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 GIMAP6Q6P9H5 292 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 KRBA2Q6ZNG9 492 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 USP48Q86UV5 1035 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 CTCFLQ8NI51 663 aaPredicted RBP8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 GDPD2Q9HCC8 539 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 DNAI1Q9UI46 699 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 A6NNZ2 444 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 PIP4K2BP78356 416 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 IFFO1Q0D2I5 559 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 TUBB8Q3ZCM7 444 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 KIF1BPQ96EK5 621 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 PPP1R9BQ96SB3 815 aa8.48□□□□□ -1.05
UBE2D3-224ENST00000508474 IBSPP21815 317 aaPredicted RBP8.47□□□□□ -1.05
UBE2D3-224ENST00000508474 FSIP1Q8NA03 581 aa8.47□□□□□ -1.05
UBE2D3-224ENST00000508474 ALS2CR12Q96Q35 445 aa8.47□□□□□ -1.05
UBE2D3-224ENST00000508474 ERCC6Q03468 1493 aa8.47□□□□□ -1.05
UBE2D3-224ENST00000508474 POTEDQ86YR6 584 aa8.47□□□□□ -1.05
UBE2D3-224ENST00000508474 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.47□□□□□ -1.051e-12■■■□□ 15.4
UBE2D3-224ENST00000508474 TMX4Q9H1E5 349 aaPredicted RBP8.47□□□□□ -1.05
UBE2D3-224ENST00000508474 ATAD2Q6PL18 1390 aa8.47□□□□□ -1.05
UBE2D3-224ENST00000508474 CCDC57Q2TAC2 916 aa8.47□□□□□ -1.05
UBE2D3-224ENST00000508474 ANO6Q4KMQ2 910 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms