RNA–Protein interactions for RNA: ENST00000507875.5

CLCN3-206, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2

Gene CLCN3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-206ENST00000507875 KNDC1Q76NI1 1749 aa9.58□□□□□ -0.88
CLCN3-206ENST00000507875 ARHGAP23Q9P227 1491 aa9.58□□□□□ -0.88
CLCN3-206ENST00000507875 ZNF592Q92610 1267 aa9.58□□□□□ -0.88
CLCN3-206ENST00000507875 BCCIPQ9P287 314 aaKnown RBP eCLIP9.58□□□□□ -0.88
CLCN3-206ENST00000507875 DIP2AQ14689 1571 aa9.58□□□□□ -0.88
CLCN3-206ENST00000507875 HSPA5P11021 654 aaKnown RBP9.58□□□□□ -0.88
CLCN3-206ENST00000507875 NR6A1Q15406 480 aa9.58□□□□□ -0.88
CLCN3-206ENST00000507875 CARD11Q9BXL7 1154 aa9.58□□□□□ -0.88
CLCN3-206ENST00000507875 RIMS2Q9UQ26 1411 aa9.57□□□□□ -0.88
CLCN3-206ENST00000507875 C14orf93Q9H972 538 aaKnown RBP9.57□□□□□ -0.88
CLCN3-206ENST00000507875 NOVA2Q9UNW9 492 aaKnown RBP9.57□□□□□ -0.88
CLCN3-206ENST00000507875 ADGRB1O14514 1584 aa9.57□□□□□ -0.88
CLCN3-206ENST00000507875 ANKRD33BA6NCL7 494 aa9.57□□□□□ -0.88
CLCN3-206ENST00000507875 SSFA2P28290 1259 aa9.57□□□□□ -0.88
CLCN3-206ENST00000507875 NPAS4Q8IUM7 802 aa9.57□□□□□ -0.88
CLCN3-206ENST00000507875 YTHDC1Q96MU7 727 aaKnown RBP9.57□□□□□ -0.88
CLCN3-206ENST00000507875 SOWAHDA6NJG2 315 aa9.56□□□□□ -0.88
CLCN3-206ENST00000507875 G3V3G9 751 aa9.56□□□□□ -0.88
CLCN3-206ENST00000507875 ATP9BO43861 1147 aa9.56□□□□□ -0.88
CLCN3-206ENST00000507875 EYA1Q99502 592 aa9.56□□□□□ -0.88
CLCN3-206ENST00000507875 ARHGEF28Q8N1W1 1705 aaKnown RBP9.56□□□□□ -0.88
CLCN3-206ENST00000507875 DLC1Q96QB1 1528 aa9.56□□□□□ -0.88
CLCN3-206ENST00000507875 IQSEC2Q5JU85 1478 aa9.56□□□□□ -0.88
CLCN3-206ENST00000507875 PER1O15534 1290 aaPredicted RBP9.56□□□□□ -0.88
CLCN3-206ENST00000507875 RBM46Q8TBY0 533 aaKnown RBP9.56□□□□□ -0.88
CLCN3-206ENST00000507875 SYMPKQ92797 1274 aaKnown RBP9.56□□□□□ -0.88
CLCN3-206ENST00000507875 ADAM33Q9BZ11 813 aa9.56□□□□□ -0.88
CLCN3-206ENST00000507875 ALKQ9UM73 1620 aa9.56□□□□□ -0.88
CLCN3-206ENST00000507875 SBNO2Q9Y2G9 1366 aa9.55□□□□□ -0.88
CLCN3-206ENST00000507875 ZBTB3Q9H5J0 574 aa9.55□□□□□ -0.88
CLCN3-206ENST00000507875 CWC22Q9HCG8 908 aaKnown RBP9.55□□□□□ -0.88
CLCN3-206ENST00000507875 NRXN3Q9Y4C0 1643 aa9.55□□□□□ -0.88
CLCN3-206ENST00000507875 MARSP56192 900 aaKnown RBP9.55□□□□□ -0.88
CLCN3-206ENST00000507875 PRSS12P56730 875 aa9.55□□□□□ -0.88
CLCN3-206ENST00000507875 TMEM2Q9UHN6 1383 aa9.54□□□□□ -0.88
CLCN3-206ENST00000507875 ADGRF5Q8IZF2 1346 aa9.54□□□□□ -0.88
CLCN3-206ENST00000507875 SEMA3FQ13275 785 aa9.54□□□□□ -0.88
CLCN3-206ENST00000507875 SIRT1Q96EB6 747 aa9.54□□□□□ -0.88
CLCN3-206ENST00000507875 EID1Q9Y6B2 187 aa9.54□□□□□ -0.88
CLCN3-206ENST00000507875 QRICH2Q9H0J4 1663 aa9.54□□□□□ -0.88
CLCN3-206ENST00000507875 SMAPO00193 183 aa9.54□□□□□ -0.88
CLCN3-206ENST00000507875 RECKO95980 971 aa9.54□□□□□ -0.88
CLCN3-206ENST00000507875 ZNF335Q9H4Z2 1342 aaPredicted RBP9.53□□□□□ -0.88
CLCN3-206ENST00000507875 LTBP4Q8N2S1 1624 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 HOXA2O43364 376 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 KDM4AO75164 1064 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 FDX1P10109 184 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 C7P10643 843 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 PLEKHG1Q9ULL1 1385 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 C9orf131Q5VYM1 1079 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 ANO2Q9NQ90 1003 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 BIN2Q9UBW5 565 aaPredicted RBP9.53□□□□□ -0.88
CLCN3-206ENST00000507875 TSKSQ9UJT2 592 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 COLQQ9Y215 455 aaPredicted RBP9.53□□□□□ -0.88
CLCN3-206ENST00000507875 CCDC7Q96M83 1385 aa9.53□□□□□ -0.88
CLCN3-206ENST00000507875 NPHP4O75161 1426 aaPredicted RBP9.52□□□□□ -0.89
CLCN3-206ENST00000507875 MED14O60244 1454 aa9.52□□□□□ -0.89
CLCN3-206ENST00000507875 COL9A1P20849 921 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 AAMPQ13685 434 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 NUDT18Q6ZVK8 323 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 RDH13Q8NBN7 331 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 FAM174AQ8TBP5 190 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 DRC1Q96MC2 740 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.51□□□□□ -0.89
CLCN3-206ENST00000507875 LGR5O75473 907 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 FOSBP53539 338 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 NBPF1Q3BBV0 1214 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 PRPF38BQ5VTL8 546 aaKnown RBP9.51□□□□□ -0.89
CLCN3-206ENST00000507875 SREK1Q8WXA9 508 aaKnown RBP9.51□□□□□ -0.89
CLCN3-206ENST00000507875 ASXL1Q8IXJ9 1541 aa9.51□□□□□ -0.89
CLCN3-206ENST00000507875 USP17L3A6NCW0 530 aa9.5□□□□□ -0.89
CLCN3-206ENST00000507875 USP17L4A6NCW7 530 aa9.5□□□□□ -0.89
CLCN3-206ENST00000507875 USP17L2Q6R6M4 530 aa9.5□□□□□ -0.89
CLCN3-206ENST00000507875 USP17L1Q7RTZ2 530 aa9.5□□□□□ -0.89
CLCN3-206ENST00000507875 CPS1P31327 1500 aa9.5□□□□□ -0.89
CLCN3-206ENST00000507875 ZNF454Q8N9F8 522 aa9.5□□□□□ -0.89
CLCN3-206ENST00000507875 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.49□□□□□ -0.89
CLCN3-206ENST00000507875 GIMAP6Q6P9H5 292 aa9.49□□□□□ -0.89
CLCN3-206ENST00000507875 KHSRPQ92945 711 aaKnown RBP eCLIP9.49□□□□□ -0.895e-7■■■□□ 16.5
CLCN3-206ENST00000507875 NAP1L5Q96NT1 182 aaPredicted RBP9.49□□□□□ -0.89
CLCN3-206ENST00000507875 PIK3R4Q99570 1358 aa9.49□□□□□ -0.89
CLCN3-206ENST00000507875 TECPR2O15040 1411 aa9.49□□□□□ -0.89
CLCN3-206ENST00000507875 TMF1P82094 1093 aa9.49□□□□□ -0.89
CLCN3-206ENST00000507875 DDX10Q13206 875 aaKnown RBP9.49□□□□□ -0.89
CLCN3-206ENST00000507875 CHRDL2Q6WN34 429 aa9.49□□□□□ -0.89
CLCN3-206ENST00000507875 ST20-MTHFSA0A0A6YYL1 179 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 UBAP1LF5GYI3 381 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 GJA5P36382 358 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 ZNF662Q6ZS27 426 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 CERS3Q8IU89 383 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 SPATA32Q96LK8 384 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 HIRIP3Q9BW71 556 aaPredicted RBP9.48□□□□□ -0.89
CLCN3-206ENST00000507875 LRPPRCP42704 1394 aaKnown RBP9.48□□□□□ -0.89
CLCN3-206ENST00000507875 YTHDC2Q9H6S0 1430 aaKnown RBP9.48□□□□□ -0.89
CLCN3-206ENST00000507875 ARID4AP29374 1257 aaPredicted RBP9.48□□□□□ -0.89
CLCN3-206ENST00000507875 ZNF211Q13398 564 aaPredicted RBP9.48□□□□□ -0.89
CLCN3-206ENST00000507875 PRDM10Q9NQV6 1147 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 PCDHGA4Q9Y5G9 962 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 WASHC2AQ641Q2 1341 aa9.48□□□□□ -0.89
CLCN3-206ENST00000507875 ABCC11Q96J66 1382 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms