RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ARHGEF10LQ9HCE6 1279 aa7.25□□□□□ -1.25
HMGB1P28-201ENST00000507778 TIMP2P16035 220 aa7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 OCLNQ16625 522 aa7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 Q6ZNB5 142 aa7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 TNS4Q8IZW8 715 aa7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 C1orf216Q8TAB5 229 aa7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 XAGE2Q96GT9 111 aa7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 ZFAND3Q9H8U3 227 aa7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 RAB6BQ9NRW1 208 aa7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 CXXC1Q9P0U4 656 aaPredicted RBP7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 GNEQ9Y223 722 aaKnown RBP7.24□□□□□ -1.25
HMGB1P28-201ENST00000507778 GFRA3O60609 400 aa7.23□□□□□ -1.25
HMGB1P28-201ENST00000507778 WEE1P30291 646 aa7.23□□□□□ -1.25
HMGB1P28-201ENST00000507778 PTGIRP43119 386 aa7.23□□□□□ -1.25
HMGB1P28-201ENST00000507778 TAS1R3Q7RTX0 852 aa7.23□□□□□ -1.25
HMGB1P28-201ENST00000507778 TXNDC2Q86VQ3 553 aa7.23□□□□□ -1.25
HMGB1P28-201ENST00000507778 KDF1Q8NAX2 398 aaPredicted RBP7.23□□□□□ -1.25
HMGB1P28-201ENST00000507778 A0A1W2PRU2 124 aa7.22□□□□□ -1.25
HMGB1P28-201ENST00000507778 A6NJY4 79 aa7.22□□□□□ -1.25
HMGB1P28-201ENST00000507778 IL2RAP01589 272 aa7.22□□□□□ -1.25
HMGB1P28-201ENST00000507778 SMTNP53814 917 aa7.22□□□□□ -1.25
HMGB1P28-201ENST00000507778 HPS1Q92902 700 aa7.22□□□□□ -1.25
HMGB1P28-201ENST00000507778 CNKSR1Q969H4 720 aa7.22□□□□□ -1.25
HMGB1P28-201ENST00000507778 AGBL1Q96MI9 1066 aa7.22□□□□□ -1.25
HMGB1P28-201ENST00000507778 MTMR7Q9Y216 660 aa7.22□□□□□ -1.25
HMGB1P28-201ENST00000507778 IGFBP4P22692 258 aa7.21□□□□□ -1.26
HMGB1P28-201ENST00000507778 EPHA4P54764 986 aa7.21□□□□□ -1.26
HMGB1P28-201ENST00000507778 CLN3Q13286 438 aa7.21□□□□□ -1.26
HMGB1P28-201ENST00000507778 TMCO4Q5TGY1 634 aa7.21□□□□□ -1.26
HMGB1P28-201ENST00000507778 GAS2L2Q8NHY3 880 aa7.21□□□□□ -1.26
HMGB1P28-201ENST00000507778 ESYT1Q9BSJ8 1104 aa7.21□□□□□ -1.26
HMGB1P28-201ENST00000507778 PDZRN3Q9UPQ7 1066 aa7.21□□□□□ -1.26
HMGB1P28-201ENST00000507778 CCDC9Q9Y3X0 531 aaKnown RBP7.21□□□□□ -1.26
HMGB1P28-201ENST00000507778 ATAD2Q6PL18 1390 aa7.2□□□□□ -1.26
HMGB1P28-201ENST00000507778 MEN1O00255 615 aa7.2□□□□□ -1.26
HMGB1P28-201ENST00000507778 RELBQ01201 579 aa7.2□□□□□ -1.26
HMGB1P28-201ENST00000507778 MTFR1Q15390 333 aa7.2□□□□□ -1.26
HMGB1P28-201ENST00000507778 SCG3Q8WXD2 468 aaKnown RBP7.2□□□□□ -1.26
HMGB1P28-201ENST00000507778 NLRP3Q96P20 1036 aa7.2□□□□□ -1.26
HMGB1P28-201ENST00000507778 TSPAN10Q9H1Z9 355 aaPredicted RBP7.2□□□□□ -1.26
HMGB1P28-201ENST00000507778 CDK2AP1O14519 115 aa7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 CAPN5O15484 640 aaPredicted RBP7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 PTCD1O75127 700 aaKnown RBP7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 SCNN1AP37088 669 aa7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 FOXK2Q01167 660 aa7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 CENPCQ03188 943 aa7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 TLR1Q15399 786 aa7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 ZNF395Q9H8N7 513 aaPredicted RBP7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 SCHIP1Q9P0W5 487 aaPredicted RBP7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 HRH3Q9Y5N1 445 aa7.19□□□□□ -1.26
HMGB1P28-201ENST00000507778 FOXO3O43524 673 aa7.18□□□□□ -1.26
HMGB1P28-201ENST00000507778 C21orf2O43822 256 aa7.18□□□□□ -1.26
HMGB1P28-201ENST00000507778 FKBP5Q13451 457 aaPredicted RBP7.18□□□□□ -1.26
HMGB1P28-201ENST00000507778 SLC9A9Q8IVB4 645 aa7.18□□□□□ -1.26
HMGB1P28-201ENST00000507778 MEIOBQ8N635 442 aa7.18□□□□□ -1.26
HMGB1P28-201ENST00000507778 CHMP7Q8WUX9 453 aaPredicted RBP7.18□□□□□ -1.26
HMGB1P28-201ENST00000507778 VTI1AQ96AJ9 217 aa7.18□□□□□ -1.26
HMGB1P28-201ENST00000507778 TSEN34Q9BSV6 310 aaKnown RBP7.18□□□□□ -1.26
HMGB1P28-201ENST00000507778 PPP1R12BO60237 982 aaPredicted RBP7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 UPP2O95045 317 aa7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 SERPINB4P48594 390 aa7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 TBCELQ5QJ74 424 aa7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 SND1Q7KZF4 910 aaKnown RBP eCLIP7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 NBPF15Q8N660 670 aa7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 COL26A1Q96A83 441 aa7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 PURBQ96QR8 312 aaKnown RBP7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 MKNK1Q9BUB5 465 aa7.17□□□□□ -1.26
HMGB1P28-201ENST00000507778 FAM187AA6NFU0 413 aa7.16□□□□□ -1.26
HMGB1P28-201ENST00000507778 STAG2Q8N3U4 1231 aa7.16□□□□□ -1.26
HMGB1P28-201ENST00000507778 FHDC1Q9C0D6 1143 aaPredicted RBP7.16□□□□□ -1.26
HMGB1P28-201ENST00000507778 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.16□□□□□ -1.26
HMGB1P28-201ENST00000507778 SEPT3Q9UH03 358 aa7.16□□□□□ -1.26
HMGB1P28-201ENST00000507778 IQSEC3Q9UPP2 1182 aaPredicted RBP7.16□□□□□ -1.26
HMGB1P28-201ENST00000507778 CHMP3Q9Y3E7 222 aa7.16□□□□□ -1.26
HMGB1P28-201ENST00000507778 NRG2O14511 850 aaPredicted RBP7.15□□□□□ -1.26
HMGB1P28-201ENST00000507778 ABL1P00519 1130 aa7.15□□□□□ -1.26
HMGB1P28-201ENST00000507778 GTF2E1P29083 439 aaPredicted RBP7.15□□□□□ -1.26
HMGB1P28-201ENST00000507778 GPC1P35052 558 aa7.15□□□□□ -1.26
HMGB1P28-201ENST00000507778 PSMA6P60900 246 aaKnown RBP7.15□□□□□ -1.26
HMGB1P28-201ENST00000507778 ZSCAN10Q96SZ4 725 aaPredicted RBP7.15□□□□□ -1.26
HMGB1P28-201ENST00000507778 SOWAHDA6NJG2 315 aa7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 SPINT1O43278 529 aa7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 MFAP1P55081 439 aaKnown RBP7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 NAA30Q147X3 362 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 SLC27A3Q5K4L6 730 aa7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 TMEM214Q6NUQ4 689 aaKnown RBP7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 CAPN12Q6ZSI9 719 aa7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 PPARGC1BQ86YN6 1023 aaKnown RBP7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 LINC00528Q8N1L1 170 aa7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 GTF3C2Q8WUA4 911 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 INSM2Q96T92 566 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 C2orf49Q9BVC5 232 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 EGFL7Q9UHF1 273 aa7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 USP3Q9Y6I4 520 aa7.14□□□□□ -1.27
HMGB1P28-201ENST00000507778 SERTM1A2A2V5 107 aa7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 AVPP01185 164 aa7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 BMP2P12643 396 aa7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 RNF144AP50876 292 aaPredicted RBP7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 TEAD4Q15561 434 aa7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 CCDC27Q2M243 656 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 439.2 ms