RNA–Protein interactions for RNA: ENST00000505944.5

NR1I3-221, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best)

Gene NR1I3, Length 865 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-221ENST00000505944 MAP3K19Q56UN5 1328 aa9.4□□□□□ -0.9
NR1I3-221ENST00000505944 IGSF1Q8N6C5 1336 aa9.4□□□□□ -0.9
NR1I3-221ENST00000505944 SSFA2P28290 1259 aa9.4□□□□□ -0.9
NR1I3-221ENST00000505944 HOXC9P31274 260 aa9.4□□□□□ -0.9
NR1I3-221ENST00000505944 AK7Q96M32 723 aa9.4□□□□□ -0.9
NR1I3-221ENST00000505944 UBR3Q6ZT12 1888 aa9.39□□□□□ -0.91
NR1I3-221ENST00000505944 KIF3CO14782 793 aa9.39□□□□□ -0.91
NR1I3-221ENST00000505944 TATP17735 454 aaPredicted RBP9.39□□□□□ -0.91
NR1I3-221ENST00000505944 C4BP0C0L5 1744 aa9.39□□□□□ -0.91
NR1I3-221ENST00000505944 PKD1L3Q7Z443 1732 aa9.39□□□□□ -0.91
NR1I3-221ENST00000505944 DDX10Q13206 875 aaKnown RBP9.38□□□□□ -0.91
NR1I3-221ENST00000505944 MSL1Q68DK7 614 aa9.38□□□□□ -0.91
NR1I3-221ENST00000505944 REM2Q8IYK8 340 aaPredicted RBP9.38□□□□□ -0.91
NR1I3-221ENST00000505944 ZNF526Q8TF50 670 aaPredicted RBP9.38□□□□□ -0.91
NR1I3-221ENST00000505944 PANK3Q9H999 370 aa9.38□□□□□ -0.91
NR1I3-221ENST00000505944 PLEKHG2Q9H7P9 1386 aa9.37□□□□□ -0.91
NR1I3-221ENST00000505944 FBLN1P23142 703 aa9.37□□□□□ -0.91
NR1I3-221ENST00000505944 TGFB2P61812 414 aa9.37□□□□□ -0.91
NR1I3-221ENST00000505944 CARD14Q9BXL6 1004 aa9.37□□□□□ -0.91
NR1I3-221ENST00000505944 MAP2P11137 1827 aaKnown RBP9.36□□□□□ -0.91
NR1I3-221ENST00000505944 ZNF316A6NFI3 1004 aaPredicted RBP9.36□□□□□ -0.91
NR1I3-221ENST00000505944 FSTL1Q12841 308 aa9.36□□□□□ -0.91
NR1I3-221ENST00000505944 CDCA8Q53HL2 280 aa9.36□□□□□ -0.91
NR1I3-221ENST00000505944 RBM46Q8TBY0 533 aaKnown RBP9.36□□□□□ -0.91
NR1I3-221ENST00000505944 ANKRD26Q9UPS8 1709 aa9.36□□□□□ -0.91
NR1I3-221ENST00000505944 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.35□□□□□ -0.91
NR1I3-221ENST00000505944 RRS1Q15050 365 aaKnown RBP9.35□□□□□ -0.91
NR1I3-221ENST00000505944 NBPF6Q5VWK0 638 aa9.35□□□□□ -0.91
NR1I3-221ENST00000505944 C16orf71Q8IYS4 520 aaPredicted RBP9.35□□□□□ -0.91
NR1I3-221ENST00000505944 USHBP1Q8N6Y0 703 aa9.35□□□□□ -0.91
NR1I3-221ENST00000505944 DNAJC5GQ8N7S2 189 aa9.35□□□□□ -0.91
NR1I3-221ENST00000505944 NBPF4Q96M43 638 aa9.35□□□□□ -0.91
NR1I3-221ENST00000505944 KIF13BQ9NQT8 1826 aa9.35□□□□□ -0.91
NR1I3-221ENST00000505944 INSRP06213 1382 aa9.35□□□□□ -0.91
NR1I3-221ENST00000505944 FLT4P35916 1363 aa9.35□□□□□ -0.91
NR1I3-221ENST00000505944 C10orf71Q711Q0 1435 aa9.34□□□□□ -0.91
NR1I3-221ENST00000505944 TNNT2P45379 298 aaPredicted RBP9.34□□□□□ -0.91
NR1I3-221ENST00000505944 NKX1-1Q15270 411 aaPredicted RBP9.34□□□□□ -0.91
NR1I3-221ENST00000505944 MPRIPQ6WCQ1 1025 aa9.34□□□□□ -0.91
NR1I3-221ENST00000505944 NLGN1Q8N2Q7 840 aa9.34□□□□□ -0.91
NR1I3-221ENST00000505944 JMYQ8N9B5 988 aa9.34□□□□□ -0.91
NR1I3-221ENST00000505944 GGNBP2Q9H3C7 697 aa9.34□□□□□ -0.91
NR1I3-221ENST00000505944 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.34□□□□□ -0.91
NR1I3-221ENST00000505944 KDM2BQ8NHM5 1336 aa9.33□□□□□ -0.92
NR1I3-221ENST00000505944 LOC102724428A0A0B4J2F2 783 aa9.33□□□□□ -0.92
NR1I3-221ENST00000505944 SIK1P57059 783 aa9.33□□□□□ -0.92
NR1I3-221ENST00000505944 CC2D1BQ5T0F9 858 aaKnown RBP9.33□□□□□ -0.92
NR1I3-221ENST00000505944 KLRG1Q96E93 195 aa9.33□□□□□ -0.92
NR1I3-221ENST00000505944 SPG7Q9UQ90 795 aa9.33□□□□□ -0.92
NR1I3-221ENST00000505944 WDR90Q96KV7 1748 aa9.33□□□□□ -0.92
NR1I3-221ENST00000505944 KIAA1551Q9HCM1 1747 aa9.33□□□□□ -0.92
NR1I3-221ENST00000505944 ZC3H4Q9UPT8 1303 aaKnown RBP9.32□□□□□ -0.92
NR1I3-221ENST00000505944 FYB1O15117 783 aa9.32□□□□□ -0.92
NR1I3-221ENST00000505944 PHF14O94880 888 aa9.32□□□□□ -0.92
NR1I3-221ENST00000505944 CCDC87Q9NVE4 849 aa9.32□□□□□ -0.92
NR1I3-221ENST00000505944 PXDNLA1KZ92 1463 aa9.32□□□□□ -0.92
NR1I3-221ENST00000505944 NCAPD2Q15021 1401 aa9.31□□□□□ -0.92
NR1I3-221ENST00000505944 CYP27B1O15528 508 aa9.31□□□□□ -0.92
NR1I3-221ENST00000505944 MMP10P09238 476 aa9.31□□□□□ -0.92
NR1I3-221ENST00000505944 HSP90AB2PQ58FF8 381 aa9.31□□□□□ -0.92
NR1I3-221ENST00000505944 TMOD3Q9NYL9 352 aa9.31□□□□□ -0.92
NR1I3-221ENST00000505944 RTCBQ9Y3I0 505 aaKnown RBP9.31□□□□□ -0.92
NR1I3-221ENST00000505944 ZNF831Q5JPB2 1677 aa9.31□□□□□ -0.92
NR1I3-221ENST00000505944 N4BP2Q86UW6 1770 aaPredicted RBP9.31□□□□□ -0.92
NR1I3-221ENST00000505944 GNPATO15228 680 aa9.3□□□□□ -0.92
NR1I3-221ENST00000505944 PRELPP51888 382 aa9.3□□□□□ -0.92
NR1I3-221ENST00000505944 TRAPPC3LQ5T215 181 aa9.3□□□□□ -0.92
NR1I3-221ENST00000505944 AMIGO3Q86WK7 504 aa9.3□□□□□ -0.92
NR1I3-221ENST00000505944 PIGBQ92521 554 aa9.3□□□□□ -0.92
NR1I3-221ENST00000505944 BCS1LQ9Y276 419 aa9.3□□□□□ -0.92
NR1I3-221ENST00000505944 COL5A3P25940 1745 aaPredicted RBP9.3□□□□□ -0.92
NR1I3-221ENST00000505944 BRCA1P38398 1863 aaKnown RBP9.3□□□□□ -0.92
NR1I3-221ENST00000505944 ARFGEF1Q9Y6D6 1849 aa9.29□□□□□ -0.92
NR1I3-221ENST00000505944 ATP6V1AP38606 617 aa9.29□□□□□ -0.92
NR1I3-221ENST00000505944 RC3H1Q5TC82 1133 aaKnown RBP9.29□□□□□ -0.92
NR1I3-221ENST00000505944 ARHGAP27Q6ZUM4 889 aa9.29□□□□□ -0.92
NR1I3-221ENST00000505944 TNS4Q8IZW8 715 aa9.29□□□□□ -0.92
NR1I3-221ENST00000505944 SMC1BQ8NDV3 1235 aa9.29□□□□□ -0.92
NR1I3-221ENST00000505944 KNSTRNQ9Y448 316 aa9.29□□□□□ -0.92
NR1I3-221ENST00000505944 TNRC6CQ9HCJ0 1690 aaKnown RBP9.29□□□□□ -0.92
NR1I3-221ENST00000505944 PCNTO95613 3336 aa9.28□□□□□ -0.92
NR1I3-221ENST00000505944 HSP90AB1P08238 724 aaKnown RBP9.28□□□□□ -0.92
NR1I3-221ENST00000505944 IFNL2Q8IZJ0 200 aa9.28□□□□□ -0.92
NR1I3-221ENST00000505944 LINC00116Q8NCU8 138 aa9.28□□□□□ -0.92
NR1I3-221ENST00000505944 PIM2Q9P1W9 311 aa9.28□□□□□ -0.92
NR1I3-221ENST00000505944 WWC3Q9ULE0 1092 aa9.28□□□□□ -0.92
NR1I3-221ENST00000505944 PARP3Q9Y6F1 533 aa9.28□□□□□ -0.92
NR1I3-221ENST00000505944 CNTNAP4Q9C0A0 1308 aa9.28□□□□□ -0.92
NR1I3-221ENST00000505944 C4AP0C0L4 1744 aa9.28□□□□□ -0.92
NR1I3-221ENST00000505944 PER1O15534 1290 aaPredicted RBP9.27□□□□□ -0.93
NR1I3-221ENST00000505944 FCHSD2O94868 740 aa9.27□□□□□ -0.93
NR1I3-221ENST00000505944 RFC4P35249 363 aa9.27□□□□□ -0.93
NR1I3-221ENST00000505944 AMER1Q5JTC6 1135 aaPredicted RBP9.27□□□□□ -0.93
NR1I3-221ENST00000505944 SMIM5Q71RC9 77 aa9.27□□□□□ -0.93
NR1I3-221ENST00000505944 NMRK2Q9NPI5 230 aa9.27□□□□□ -0.93
NR1I3-221ENST00000505944 EMILIN1Q9Y6C2 1016 aa9.27□□□□□ -0.93
NR1I3-221ENST00000505944 ERVV-2B6SEH9 535 aa9.26□□□□□ -0.93
NR1I3-221ENST00000505944 PITPNM1O00562 1244 aa9.26□□□□□ -0.93
NR1I3-221ENST00000505944 DALRD3Q5D0E6 543 aaKnown RBP9.26□□□□□ -0.93
NR1I3-221ENST00000505944 C9orf131Q5VYM1 1079 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms