RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 THUMPD2Q9BTF0 503 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-206ENST00000505705 KAT6BQ8WYB5 2073 aa10.75□□□□□ -0.69
LIMCH1-206ENST00000505705 BCL9O00512 1426 aa10.75□□□□□ -0.69
LIMCH1-206ENST00000505705 BTBD11A6QL63 1104 aa10.74□□□□□ -0.69
LIMCH1-206ENST00000505705 BAG6P46379 1132 aa10.74□□□□□ -0.69
LIMCH1-206ENST00000505705 CALD1Q05682 793 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-206ENST00000505705 TTC5Q8N0Z6 440 aa10.74□□□□□ -0.69
LIMCH1-206ENST00000505705 PIGBQ92521 554 aa10.74□□□□□ -0.69
LIMCH1-206ENST00000505705 KDM6AO15550 1401 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-206ENST00000505705 HNRNPUQ00839 825 aaKnown RBP eCLIP10.73□□□□□ -0.69
LIMCH1-206ENST00000505705 TAF7Q15545 349 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-206ENST00000505705 PTF1AQ7RTS3 328 aa10.73□□□□□ -0.69
LIMCH1-206ENST00000505705 NGEFQ8N5V2 710 aa10.73□□□□□ -0.69
LIMCH1-206ENST00000505705 UPF1Q92900 1129 aaKnown RBP eCLIP10.73□□□□□ -0.69
LIMCH1-206ENST00000505705 TRIM35Q9UPQ4 493 aa10.73□□□□□ -0.69
LIMCH1-206ENST00000505705 CAPN15O75808 1086 aa10.72□□□□□ -0.69
LIMCH1-206ENST00000505705 SLC39A6Q13433 755 aa10.72□□□□□ -0.69
LIMCH1-206ENST00000505705 SMARCC1Q92922 1105 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-206ENST00000505705 RBM42Q9BTD8 480 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-206ENST00000505705 DOT1LQ8TEK3 1739 aa10.72□□□□□ -0.69
LIMCH1-206ENST00000505705 EN1Q05925 392 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-206ENST00000505705 CCDC27Q2M243 656 aa10.71□□□□□ -0.69
LIMCH1-206ENST00000505705 WWC1Q8IX03 1113 aa10.71□□□□□ -0.69
LIMCH1-206ENST00000505705 CEMIPQ8WUJ3 1361 aa10.71□□□□□ -0.69
LIMCH1-206ENST00000505705 MIS18AQ9NYP9 233 aa10.71□□□□□ -0.69
LIMCH1-206ENST00000505705 TSPYL4Q9UJ04 414 aa10.71□□□□□ -0.69
LIMCH1-206ENST00000505705 ASAP1Q9ULH1 1129 aa10.71□□□□□ -0.69
LIMCH1-206ENST00000505705 PTCD1O75127 700 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-206ENST00000505705 DEFB132Q7Z7B7 95 aa10.7□□□□□ -0.7
LIMCH1-206ENST00000505705 YTHDC1Q96MU7 727 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-206ENST00000505705 ATG3Q9NT62 314 aa10.7□□□□□ -0.7
LIMCH1-206ENST00000505705 DLG5Q8TDM6 1919 aa10.7□□□□□ -0.7
LIMCH1-206ENST00000505705 PLSCR1O15162 318 aa10.69□□□□□ -0.7
LIMCH1-206ENST00000505705 DSG3P32926 999 aa10.69□□□□□ -0.7
LIMCH1-206ENST00000505705 GNAI1P63096 354 aa10.69□□□□□ -0.7
LIMCH1-206ENST00000505705 ZNF790Q6PG37 636 aa10.69□□□□□ -0.7
LIMCH1-206ENST00000505705 WDR63Q8IWG1 891 aa10.69□□□□□ -0.7
LIMCH1-206ENST00000505705 SCN11AQ9UI33 1791 aa10.69□□□□□ -0.7
LIMCH1-206ENST00000505705 NHSQ6T4R5 1651 aa10.69□□□□□ -0.7
LIMCH1-206ENST00000505705 PALLDQ8WX93 1383 aa10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 SBF2Q86WG5 1849 aa10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 TOGARAM1Q9Y4F4 1720 aa10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 ATP6V1AP38606 617 aa10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 EZH2Q15910 746 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 CFAP44Q96MT7 982 aa10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 SPINK5Q9NQ38 1064 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 IFT57Q9NWB7 429 aa10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 CCNL1Q9UK58 526 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 ITGB4P16144 1822 aa10.68□□□□□ -0.7
LIMCH1-206ENST00000505705 LOC102724428A0A0B4J2F2 783 aa10.67□□□□□ -0.7
LIMCH1-206ENST00000505705 KCNQ3O43525 872 aa10.67□□□□□ -0.7
LIMCH1-206ENST00000505705 HMGB2P26583 209 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-206ENST00000505705 SIK1P57059 783 aa10.67□□□□□ -0.7
LIMCH1-206ENST00000505705 GOLGA2Q08379 1002 aa10.67□□□□□ -0.7
LIMCH1-206ENST00000505705 TXNRD1Q16881 649 aa10.67□□□□□ -0.7
LIMCH1-206ENST00000505705 FMNL2Q96PY5 1086 aa10.67□□□□□ -0.7
LIMCH1-206ENST00000505705 BABAM1Q9NWV8 329 aa10.67□□□□□ -0.7
LIMCH1-206ENST00000505705 VIRMAQ69YN4 1812 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 CHL1O00533 1208 aa10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 SOCS7O14512 581 aa10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 KCNQ4P56696 695 aa10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 SLC27A3Q5K4L6 730 aa10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 SAMD1Q6SPF0 538 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 CAMKK2Q96RR4 588 aa10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 MYH16Q9H6N6 1097 aa10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 MBIPQ9NS73 344 aa10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 MRC1P22897 1456 aa10.66□□□□□ -0.7
LIMCH1-206ENST00000505705 BTAF1O14981 1849 aa10.65□□□□□ -0.7
LIMCH1-206ENST00000505705 IL16Q14005 1332 aa10.65□□□□□ -0.7
LIMCH1-206ENST00000505705 TSR2Q969E8 191 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-206ENST00000505705 ZNF496Q96IT1 587 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-206ENST00000505705 ZNF219Q9P2Y4 722 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-206ENST00000505705 ADAMTS7Q9UKP4 1686 aa10.65□□□□□ -0.7
LIMCH1-206ENST00000505705 E9PSI1 815 aa10.64□□□□□ -0.71
LIMCH1-206ENST00000505705 SNRPA1P09661 255 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-206ENST00000505705 EIF4A1P60842 406 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-206ENST00000505705 NBPF14Q5TI25 921 aa10.64□□□□□ -0.71
LIMCH1-206ENST00000505705 TEX13AQ9BXU3 409 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-206ENST00000505705 TNS1Q9HBL0 1735 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-206ENST00000505705 ELL2O00472 640 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-206ENST00000505705 STARD3NLO95772 234 aa10.63□□□□□ -0.71
LIMCH1-206ENST00000505705 ZNF853P0CG23 659 aa10.63□□□□□ -0.71
LIMCH1-206ENST00000505705 DNAJC10Q8IXB1 793 aa10.63□□□□□ -0.71
LIMCH1-206ENST00000505705 VSIG10Q8N0Z9 540 aa10.63□□□□□ -0.71
LIMCH1-206ENST00000505705 PROM2Q8N271 834 aa10.63□□□□□ -0.71
LIMCH1-206ENST00000505705 HEG1Q9ULI3 1381 aa10.63□□□□□ -0.71
LIMCH1-206ENST00000505705 ZBED9Q6R2W3 1325 aa10.62□□□□□ -0.71
LIMCH1-206ENST00000505705 ZNF521Q96K83 1311 aa10.62□□□□□ -0.71
LIMCH1-206ENST00000505705 EIF2S2P20042 333 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-206ENST00000505705 NPM2Q86SE8 214 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-206ENST00000505705 CDCA7LQ96GN5 454 aa10.62□□□□□ -0.71
LIMCH1-206ENST00000505705 AK7Q96M32 723 aa10.62□□□□□ -0.71
LIMCH1-206ENST00000505705 LRRC4BQ9NT99 713 aa10.62□□□□□ -0.71
LIMCH1-206ENST00000505705 STK32BQ9NY57 414 aa10.62□□□□□ -0.71
LIMCH1-206ENST00000505705 FANCIQ9NVI1 1328 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 EP400Q96L91 3159 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 PRAMEF22A3QJZ6 481 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 GIGYF1O75420 1035 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 SLFN5Q08AF3 891 aa10.61□□□□□ -0.71
LIMCH1-206ENST00000505705 ITPK1Q13572 414 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms