RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 TUBGCP6Q96RT7 1819 aa13.41□□□□□ -0.26
NUP54-203ENST00000504173 U2SURPO15042 1029 aaKnown RBP13.41□□□□□ -0.26
NUP54-203ENST00000504173 BTAF1O14981 1849 aa13.41□□□□□ -0.26
NUP54-203ENST00000504173 IGSF1Q8N6C5 1336 aa13.4□□□□□ -0.26
NUP54-203ENST00000504173 NCAPD2Q15021 1401 aa13.39□□□□□ -0.27
NUP54-203ENST00000504173 IL2RBP14784 551 aa13.38□□□□□ -0.27
NUP54-203ENST00000504173 SULT6B1Q6IMI4 303 aa13.38□□□□□ -0.27
NUP54-203ENST00000504173 RAPGEF4Q8WZA2 1011 aa13.38□□□□□ -0.27
NUP54-203ENST00000504173 ACSBG1Q96GR2 724 aa13.38□□□□□ -0.27
NUP54-203ENST00000504173 NMRK2Q9NPI5 230 aa13.38□□□□□ -0.27
NUP54-203ENST00000504173 HMOX1P09601 288 aa13.37□□□□□ -0.27
NUP54-203ENST00000504173 U2AF1L5P0DN76 240 aaPredicted RBP13.37□□□□□ -0.27
NUP54-203ENST00000504173 U2AF1Q01081 240 aaKnown RBP eCLIP13.37□□□□□ -0.27
NUP54-203ENST00000504173 AEBP1Q8IUX7 1158 aa13.37□□□□□ -0.27
NUP54-203ENST00000504173 MRS2Q9HD23 443 aa13.37□□□□□ -0.27
NUP54-203ENST00000504173 MEGF6O75095 1541 aa13.36□□□□□ -0.27
NUP54-203ENST00000504173 TATP17735 454 aaPredicted RBP13.36□□□□□ -0.27
NUP54-203ENST00000504173 WDR43Q15061 677 aaKnown RBP eCLIP13.36□□□□□ -0.27
NUP54-203ENST00000504173 CCDC184Q52MB2 194 aa13.36□□□□□ -0.27
NUP54-203ENST00000504173 C10orf71Q711Q0 1435 aa13.36□□□□□ -0.27
NUP54-203ENST00000504173 KDRP35968 1356 aa13.35□□□□□ -0.27
NUP54-203ENST00000504173 FAM161AQ3B820 660 aa13.34□□□□□ -0.27
NUP54-203ENST00000504173 COL23A1Q86Y22 540 aaPredicted RBP13.34□□□□□ -0.27
NUP54-203ENST00000504173 MIER1Q8N108 512 aa13.34□□□□□ -0.27
NUP54-203ENST00000504173 C16orf71Q8IYS4 520 aaPredicted RBP13.33□□□□□ -0.28
NUP54-203ENST00000504173 CCER2I3L3R5 266 aa13.32□□□□□ -0.28
NUP54-203ENST00000504173 FCHSD2O94868 740 aa13.32□□□□□ -0.28
NUP54-203ENST00000504173 PRKAR2BP31323 418 aa13.32□□□□□ -0.28
NUP54-203ENST00000504173 ZCRB1Q8TBF4 217 aaKnown RBP13.32□□□□□ -0.28
NUP54-203ENST00000504173 RSPH6AQ9H0K4 717 aa13.32□□□□□ -0.28
NUP54-203ENST00000504173 PLEKHO1Q53GL0 409 aaPredicted RBP13.31□□□□□ -0.28
NUP54-203ENST00000504173 SPG7Q9UQ90 795 aa13.31□□□□□ -0.28
NUP54-203ENST00000504173 PLEKHG2Q9H7P9 1386 aa13.31□□□□□ -0.28
NUP54-203ENST00000504173 NEFMP07197 916 aa13.3□□□□□ -0.28
NUP54-203ENST00000504173 MSL1Q68DK7 614 aa13.3□□□□□ -0.28
NUP54-203ENST00000504173 PNNQ9H307 717 aaKnown RBP13.3□□□□□ -0.28
NUP54-203ENST00000504173 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.3□□□□□ -0.281e-7■■■□□ 16.2
NUP54-203ENST00000504173 ADAMTS8Q9UP79 889 aa13.3□□□□□ -0.28
NUP54-203ENST00000504173 PKD1L3Q7Z443 1732 aa13.3□□□□□ -0.28
NUP54-203ENST00000504173 AMOTQ4VCS5 1084 aa13.29□□□□□ -0.28
NUP54-203ENST00000504173 DDX54Q8TDD1 881 aaKnown RBP13.29□□□□□ -0.28
NUP54-203ENST00000504173 PNISRQ8TF01 805 aaKnown RBP13.29□□□□□ -0.28
NUP54-203ENST00000504173 PRDM10Q9NQV6 1147 aa13.29□□□□□ -0.28
NUP54-203ENST00000504173 PCDH11XQ9BZA7 1347 aa13.29□□□□□ -0.28
NUP54-203ENST00000504173 PCDH11YQ9BZA8 1340 aa13.29□□□□□ -0.28
NUP54-203ENST00000504173 LY75O60449 1722 aa13.28□□□□□ -0.28
NUP54-203ENST00000504173 ZNF530Q6P9A1 599 aaPredicted RBP13.28□□□□□ -0.28
NUP54-203ENST00000504173 MAPK8IP3Q9UPT6 1336 aa13.28□□□□□ -0.28
NUP54-203ENST00000504173 PXDNLA1KZ92 1463 aa13.28□□□□□ -0.28
NUP54-203ENST00000504173 KCNQ4P56696 695 aa13.27□□□□□ -0.29
NUP54-203ENST00000504173 CCDC146Q8IYE0 955 aa13.27□□□□□ -0.29
NUP54-203ENST00000504173 SMC1BQ8NDV3 1235 aa13.27□□□□□ -0.29
NUP54-203ENST00000504173 MTHFSDQ2M296 383 aaKnown RBP13.26□□□□□ -0.29
NUP54-203ENST00000504173 C1orf141Q5JVX7 400 aa13.26□□□□□ -0.29
NUP54-203ENST00000504173 IFNL2Q8IZJ0 200 aa13.26□□□□□ -0.29
NUP54-203ENST00000504173 FAM9BQ8IZU0 186 aa13.26□□□□□ -0.29
NUP54-203ENST00000504173 FLAD1Q8NFF5 587 aa13.26□□□□□ -0.29
NUP54-203ENST00000504173 GAS2L2Q8NHY3 880 aa13.26□□□□□ -0.29
NUP54-203ENST00000504173 PHACTR3Q96KR7 559 aa13.26□□□□□ -0.29
NUP54-203ENST00000504173 PLEKHF1Q96S99 279 aa13.26□□□□□ -0.29
NUP54-203ENST00000504173 CYP27B1O15528 508 aa13.25□□□□□ -0.29
NUP54-203ENST00000504173 PHKG2P15735 406 aa13.25□□□□□ -0.29
NUP54-203ENST00000504173 RGS19P49795 217 aa13.25□□□□□ -0.29
NUP54-203ENST00000504173 RUNDC1Q96C34 613 aa13.25□□□□□ -0.29
NUP54-203ENST00000504173 MLLT1Q03111 559 aaPredicted RBP13.24□□□□□ -0.29
NUP54-203ENST00000504173 CCNL1Q9UK58 526 aaPredicted RBP13.24□□□□□ -0.29
NUP54-203ENST00000504173 KDM2BQ8NHM5 1336 aa13.23□□□□□ -0.29
NUP54-203ENST00000504173 HSP90AB1P08238 724 aaKnown RBP13.23□□□□□ -0.29
NUP54-203ENST00000504173 AKAP4Q5JQC9 854 aa13.23□□□□□ -0.29
NUP54-203ENST00000504173 HMGB2P26583 209 aaKnown RBP13.22□□□□□ -0.29
NUP54-203ENST00000504173 NFE2L2Q16236 605 aa13.22□□□□□ -0.29
NUP54-203ENST00000504173 TNRC6CQ9HCJ0 1690 aaKnown RBP13.21□□□□□ -0.29
NUP54-203ENST00000504173 GNAT3A8MTJ3 354 aa13.21□□□□□ -0.29
NUP54-203ENST00000504173 FOXN1O15353 648 aa13.21□□□□□ -0.29
NUP54-203ENST00000504173 NKX1-1Q15270 411 aaPredicted RBP13.21□□□□□ -0.29
NUP54-203ENST00000504173 ABHD8Q96I13 439 aa13.21□□□□□ -0.29
NUP54-203ENST00000504173 KCPQ6ZWJ8 1503 aa13.21□□□□□ -0.29
NUP54-203ENST00000504173 TMPOP42166 694 aaKnown RBP13.2□□□□□ -0.3
NUP54-203ENST00000504173 MPRIPQ6WCQ1 1025 aa13.2□□□□□ -0.3
NUP54-203ENST00000504173 DCAF5Q96JK2 942 aa13.2□□□□□ -0.3
NUP54-203ENST00000504173 RRP7AQ9Y3A4 280 aaKnown RBP13.2□□□□□ -0.3
NUP54-203ENST00000504173 KDM6AO15550 1401 aaPredicted RBP13.2□□□□□ -0.3
NUP54-203ENST00000504173 DOT1LQ8TEK3 1739 aa13.19□□□□□ -0.3
NUP54-203ENST00000504173 KAT6BQ8WYB5 2073 aa13.19□□□□□ -0.3
NUP54-203ENST00000504173 APAF1O14727 1248 aa13.19□□□□□ -0.3
NUP54-203ENST00000504173 RIPK4P57078 832 aa13.19□□□□□ -0.3
NUP54-203ENST00000504173 NEUROD2Q15784 382 aa13.19□□□□□ -0.3
NUP54-203ENST00000504173 C9orf131Q5VYM1 1079 aa13.19□□□□□ -0.3
NUP54-203ENST00000504173 RTF1Q92541 710 aaKnown RBP13.19□□□□□ -0.3
NUP54-203ENST00000504173 SYTL4Q96C24 671 aaPredicted RBP13.19□□□□□ -0.3
NUP54-203ENST00000504173 KIAA1551Q9HCM1 1747 aa13.19□□□□□ -0.3
NUP54-203ENST00000504173 RNMTO43148 476 aaKnown RBP13.18□□□□□ -0.3
NUP54-203ENST00000504173 ARHGAP27Q6ZUM4 889 aa13.18□□□□□ -0.3
NUP54-203ENST00000504173 RRAGCQ9HB90 399 aa13.18□□□□□ -0.3
NUP54-203ENST00000504173 TOGARAM1Q9Y4F4 1720 aa13.18□□□□□ -0.3
NUP54-203ENST00000504173 DLG5Q8TDM6 1919 aa13.17□□□□□ -0.3
NUP54-203ENST00000504173 HTATSF1O43719 755 aaKnown RBP13.17□□□□□ -0.3
NUP54-203ENST00000504173 PRIM1P49642 420 aaKnown RBP13.17□□□□□ -0.3
NUP54-203ENST00000504173 CTCFP49711 727 aaPredicted RBP13.17□□□□□ -0.3
NUP54-203ENST00000504173 TGFB2P61812 414 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms