RNA–Protein interactions for RNA: ENST00000502948.1

LSM3P4-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 4, humanhuman

BASIC

Gene LSM3P4, Length 309 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P4-201ENST00000502948 CNTNAP4Q9C0A0 1308 aa8.4□□□□□ -1.06
LSM3P4-201ENST00000502948 ATP6V1AP38606 617 aa8.4□□□□□ -1.06
LSM3P4-201ENST00000502948 TGFB2P61812 414 aa8.4□□□□□ -1.06
LSM3P4-201ENST00000502948 KLHL34Q8N239 644 aa8.4□□□□□ -1.06
LSM3P4-201ENST00000502948 NLGN1Q8N2Q7 840 aa8.4□□□□□ -1.06
LSM3P4-201ENST00000502948 LINC00116Q8NCU8 138 aa8.4□□□□□ -1.06
LSM3P4-201ENST00000502948 MYH14Q7Z406 1995 aaKnown RBP8.4□□□□□ -1.06
LSM3P4-201ENST00000502948 VIRMAQ69YN4 1812 aaKnown RBP8.4□□□□□ -1.07
LSM3P4-201ENST00000502948 ARFGEF1Q9Y6D6 1849 aa8.4□□□□□ -1.07
LSM3P4-201ENST00000502948 C4AP0C0L4 1744 aa8.4□□□□□ -1.07
LSM3P4-201ENST00000502948 PPM1GO15355 546 aaPredicted RBP8.39□□□□□ -1.07
LSM3P4-201ENST00000502948 ITPK1Q13572 414 aa8.39□□□□□ -1.07
LSM3P4-201ENST00000502948 PLEKHO1Q53GL0 409 aaPredicted RBP8.39□□□□□ -1.07
LSM3P4-201ENST00000502948 AMIGO3Q86WK7 504 aa8.39□□□□□ -1.07
LSM3P4-201ENST00000502948 ASAP1Q9ULH1 1129 aa8.39□□□□□ -1.07
LSM3P4-201ENST00000502948 ADAMTS7Q9UKP4 1686 aa8.39□□□□□ -1.07
LSM3P4-201ENST00000502948 KDM6AO15550 1401 aaPredicted RBP8.38□□□□□ -1.07
LSM3P4-201ENST00000502948 ATP10DQ9P241 1426 aa8.38□□□□□ -1.07
LSM3P4-201ENST00000502948 SENP3-EIF4A1A0A087X0R7 540 aa8.38□□□□□ -1.07
LSM3P4-201ENST00000502948 RPS6KA4O75676 772 aa8.38□□□□□ -1.07
LSM3P4-201ENST00000502948 TRAPPC3LQ5T215 181 aa8.38□□□□□ -1.07
LSM3P4-201ENST00000502948 MSL1Q68DK7 614 aa8.38□□□□□ -1.07
LSM3P4-201ENST00000502948 PANK3Q9H999 370 aa8.38□□□□□ -1.07
LSM3P4-201ENST00000502948 RTCBQ9Y3I0 505 aaKnown RBP8.38□□□□□ -1.07
LSM3P4-201ENST00000502948 C10orf71Q711Q0 1435 aa8.37□□□□□ -1.07
LSM3P4-201ENST00000502948 TJP1Q07157 1748 aa8.37□□□□□ -1.07
LSM3P4-201ENST00000502948 GNPATO15228 680 aa8.37□□□□□ -1.07
LSM3P4-201ENST00000502948 PELP1Q8IZL8 1130 aaKnown RBP8.37□□□□□ -1.07
LSM3P4-201ENST00000502948 SLC4A9Q96Q91 983 aa8.37□□□□□ -1.07
LSM3P4-201ENST00000502948 PXDNLA1KZ92 1463 aa8.37□□□□□ -1.07
LSM3P4-201ENST00000502948 MRC1P22897 1456 aa8.37□□□□□ -1.07
LSM3P4-201ENST00000502948 N4BP2Q86UW6 1770 aaPredicted RBP8.36□□□□□ -1.07
LSM3P4-201ENST00000502948 GPBP1L1Q9HC44 474 aaPredicted RBP8.36□□□□□ -1.07
LSM3P4-201ENST00000502948 UBR2Q8IWV8 1755 aa8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 PHF14O94880 888 aa8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 MMP10P09238 476 aa8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 HSPA5P11021 654 aaKnown RBP8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 GYS1P13807 737 aa8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 MTHFSP49914 203 aa8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 CABP4P57796 275 aa8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 ARHGEF1Q92888 912 aaKnown RBP8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 CCDC87Q9NVE4 849 aa8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 NPC1L1Q9UHC9 1359 aa8.35□□□□□ -1.07
LSM3P4-201ENST00000502948 NRXN2Q9P2S2 1712 aa8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 IL13P35225 146 aa8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 RFC4P35249 363 aa8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 AKAP4Q5JQC9 854 aa8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 AMER1Q5JTC6 1135 aaPredicted RBP8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 C1orf141Q5JVX7 400 aa8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 ZNF530Q6P9A1 599 aaPredicted RBP8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 MORC1Q86VD1 984 aa8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 KNSTRNQ9Y448 316 aa8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 DLEC1Q9Y238 1755 aa8.34□□□□□ -1.07
LSM3P4-201ENST00000502948 SBF1O95248 1867 aa8.33□□□□□ -1.08
LSM3P4-201ENST00000502948 HSPA6P17066 643 aa8.33□□□□□ -1.08
LSM3P4-201ENST00000502948 VSIG10Q8N0Z9 540 aa8.33□□□□□ -1.08
LSM3P4-201ENST00000502948 NFATC2IPQ8NCF5 419 aa8.33□□□□□ -1.08
LSM3P4-201ENST00000502948 USP42Q9H9J4 1324 aaKnown RBP8.32□□□□□ -1.08
LSM3P4-201ENST00000502948 PER1O15534 1290 aaPredicted RBP8.32□□□□□ -1.08
LSM3P4-201ENST00000502948 TNNT2P45379 298 aaPredicted RBP8.32□□□□□ -1.08
LSM3P4-201ENST00000502948 SULT6B1Q6IMI4 303 aa8.32□□□□□ -1.08
LSM3P4-201ENST00000502948 RBM42Q9BTD8 480 aaKnown RBP8.32□□□□□ -1.08
LSM3P4-201ENST00000502948 SLC52A2Q9HAB3 445 aa8.32□□□□□ -1.08
LSM3P4-201ENST00000502948 PARP3Q9Y6F1 533 aa8.32□□□□□ -1.08
LSM3P4-201ENST00000502948 SIPA1L3O60292 1781 aaPredicted RBP8.32□□□□□ -1.08
LSM3P4-201ENST00000502948 ZC3H4Q9UPT8 1303 aaKnown RBP8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 AFDNP55196 1824 aaKnown RBP8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 KCPQ6ZWJ8 1503 aa8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 KIF3CO14782 793 aa8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 TOMM70O94826 608 aa8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 KCNA3P22001 575 aa8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 TM4SF1P30408 202 aa8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 CRKLP46109 303 aaKnown RBP8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 AEBP1Q8IUX7 1158 aa8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 PIM2Q9P1W9 311 aa8.31□□□□□ -1.08
LSM3P4-201ENST00000502948 TNRC6CQ9HCJ0 1690 aaKnown RBP8.3□□□□□ -1.08
LSM3P4-201ENST00000502948 INTS5Q6P9B9 1019 aaKnown RBP8.3□□□□□ -1.08
LSM3P4-201ENST00000502948 SMIM5Q71RC9 77 aa8.3□□□□□ -1.08
LSM3P4-201ENST00000502948 PCGF6Q9BYE7 350 aa8.3□□□□□ -1.08
LSM3P4-201ENST00000502948 SOS1Q07889 1333 aaPredicted RBP8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 CEP350Q5VT06 3117 aa8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 A0A0G2JLW4 131 aa8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 RNMTO43148 476 aaKnown RBP8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 DPEP1P16444 411 aa8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 POLR3GLQ9BT43 218 aa8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 NARFQ9UHQ1 456 aa8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 PDZRN3Q9UPQ7 1066 aa8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 BCS1LQ9Y276 419 aa8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 KIF7Q2M1P5 1343 aa8.29□□□□□ -1.08
LSM3P4-201ENST00000502948 COL3A1P02461 1466 aaPredicted RBP8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 POLRMTO00411 1230 aaKnown RBP8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 DIAPH1O60610 1272 aaKnown RBP8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 PTCD1O75127 700 aaKnown RBP8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 FCHSD2O94868 740 aa8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 CYP19A1P11511 503 aaPredicted RBP8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 APLP1P51693 650 aa8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 DDR1Q08345 913 aa8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 FKBP8Q14318 412 aa8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 DALRD3Q5D0E6 543 aaKnown RBP8.28□□□□□ -1.08
LSM3P4-201ENST00000502948 IFFO2Q5TF58 517 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms