RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 CCDC30Q5VVM6 783 aa12.18□□□□□ -0.46
CLIP1-204ENST00000501271 ARXQ96QS3 562 aa12.18□□□□□ -0.46
CLIP1-204ENST00000501271 RGPD2P0DJD1 1756 aa12.18□□□□□ -0.46
CLIP1-204ENST00000501271 NFAT5O94916 1531 aa12.17□□□□□ -0.46
CLIP1-204ENST00000501271 RABEP1Q15276 862 aa12.17□□□□□ -0.46
CLIP1-204ENST00000501271 C14orf37Q86TY3 774 aa12.17□□□□□ -0.46
CLIP1-204ENST00000501271 EXOC6BQ9Y2D4 811 aa12.17□□□□□ -0.46
CLIP1-204ENST00000501271 EIF5BO60841 1220 aaKnown RBP12.17□□□□□ -0.46
CLIP1-204ENST00000501271 GOLGA6L3A6NEY3 463 aa12.16□□□□□ -0.46
CLIP1-204ENST00000501271 PDE1AP54750 535 aa12.16□□□□□ -0.46
CLIP1-204ENST00000501271 RBM33Q96EV2 1170 aaKnown RBP12.16□□□□□ -0.46
CLIP1-204ENST00000501271 OSBPL3Q9H4L5 887 aa12.16□□□□□ -0.46
CLIP1-204ENST00000501271 PHF8Q9UPP1 1060 aa12.16□□□□□ -0.46
CLIP1-204ENST00000501271 PXDNLA1KZ92 1463 aa12.16□□□□□ -0.46
CLIP1-204ENST00000501271 PNMA6EA0A0J9YXQ4 647 aa12.16□□□□□ -0.46
CLIP1-204ENST00000501271 TAF7Q15545 349 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-204ENST00000501271 MED1Q15648 1581 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-204ENST00000501271 CASC1Q6TDU7 716 aa12.16□□□□□ -0.46
CLIP1-204ENST00000501271 SALL3Q9BXA9 1300 aa12.15□□□□□ -0.46
CLIP1-204ENST00000501271 XRCC6P12956 609 aaKnown RBP eCLIP12.15□□□□□ -0.46
CLIP1-204ENST00000501271 TSHZ3Q63HK5 1081 aa12.15□□□□□ -0.46
CLIP1-204ENST00000501271 GBP4Q96PP9 640 aa12.15□□□□□ -0.46
CLIP1-204ENST00000501271 KDM3BQ7LBC6 1761 aa12.15□□□□□ -0.46
CLIP1-204ENST00000501271 GNAI3P08754 354 aa12.15□□□□□ -0.47
CLIP1-204ENST00000501271 SSFA2P28290 1259 aa12.15□□□□□ -0.47
CLIP1-204ENST00000501271 SOS1Q07889 1333 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-204ENST00000501271 BABAM1Q9NWV8 329 aa12.14□□□□□ -0.47
CLIP1-204ENST00000501271 ZNF142P52746 1687 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-204ENST00000501271 LRRFIP2Q9Y608 721 aaKnown RBP12.13□□□□□ -0.47
CLIP1-204ENST00000501271 CEMIPQ8WUJ3 1361 aa12.13□□□□□ -0.47
CLIP1-204ENST00000501271 PHRF1Q9P1Y6 1649 aaKnown RBP12.13□□□□□ -0.47
CLIP1-204ENST00000501271 IBTKQ9P2D0 1353 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-204ENST00000501271 ERC2O15083 957 aa12.13□□□□□ -0.47
CLIP1-204ENST00000501271 ATP8B2P98198 1209 aa12.13□□□□□ -0.47
CLIP1-204ENST00000501271 NBPF6Q5VWK0 638 aa12.13□□□□□ -0.47
CLIP1-204ENST00000501271 IP6K1Q92551 441 aa12.13□□□□□ -0.47
CLIP1-204ENST00000501271 NBPF4Q96M43 638 aa12.13□□□□□ -0.47
CLIP1-204ENST00000501271 LRRCC1Q9C099 1032 aa12.13□□□□□ -0.47
CLIP1-204ENST00000501271 PHAXQ9H814 394 aaKnown RBP12.13□□□□□ -0.47
CLIP1-204ENST00000501271 LMO7Q8WWI1 1683 aa12.13□□□□□ -0.47
CLIP1-204ENST00000501271 REC8O95072 547 aa12.12□□□□□ -0.47
CLIP1-204ENST00000501271 HDGFL1Q5TGJ6 251 aa12.12□□□□□ -0.47
CLIP1-204ENST00000501271 PANK2Q9BZ23 570 aa12.12□□□□□ -0.47
CLIP1-204ENST00000501271 USP44Q9H0E7 712 aa12.12□□□□□ -0.47
CLIP1-204ENST00000501271 MX1P20591 662 aa12.11□□□□□ -0.47
CLIP1-204ENST00000501271 ADGRL3Q9HAR2 1447 aa12.11□□□□□ -0.47
CLIP1-204ENST00000501271 FAM43AQ8N2R8 423 aa12.11□□□□□ -0.47
CLIP1-204ENST00000501271 LGR6Q9HBX8 967 aa12.11□□□□□ -0.47
CLIP1-204ENST00000501271 ZBTB7CA1YPR0 619 aa12.1□□□□□ -0.47
CLIP1-204ENST00000501271 PRKCSHP14314 528 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-204ENST00000501271 ANKLE2Q86XL3 938 aa12.1□□□□□ -0.47
CLIP1-204ENST00000501271 UBTFL1P0CB47 393 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-204ENST00000501271 ESCO1Q5FWF5 840 aa12.1□□□□□ -0.47
CLIP1-204ENST00000501271 CLEC17AQ6ZS10 378 aa12.1□□□□□ -0.47
CLIP1-204ENST00000501271 ST18O60284 1047 aa12.09□□□□□ -0.47
CLIP1-204ENST00000501271 EIF2S2P20042 333 aaKnown RBP12.09□□□□□ -0.47
CLIP1-204ENST00000501271 EIF4A1P60842 406 aaKnown RBP12.09□□□□□ -0.47
CLIP1-204ENST00000501271 LRRC59Q96AG4 307 aaKnown RBP12.09□□□□□ -0.47
CLIP1-204ENST00000501271 KCNQ3O43525 872 aa12.09□□□□□ -0.47
CLIP1-204ENST00000501271 BAG4O95429 457 aaKnown RBP12.09□□□□□ -0.47
CLIP1-204ENST00000501271 MRE11P49959 708 aa12.09□□□□□ -0.47
CLIP1-204ENST00000501271 PSME1Q06323 249 aa12.09□□□□□ -0.47
CLIP1-204ENST00000501271 PKP1Q13835 747 aa12.09□□□□□ -0.47
CLIP1-204ENST00000501271 ESYT1Q9BSJ8 1104 aa12.09□□□□□ -0.47
CLIP1-204ENST00000501271 PXDNQ92626 1479 aa12.08□□□□□ -0.47
CLIP1-204ENST00000501271 CYP2E1P05181 493 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-204ENST00000501271 ZGPATQ8N5A5 531 aaKnown RBP12.08□□□□□ -0.48
CLIP1-204ENST00000501271 GRPEL1Q9HAV7 217 aa12.08□□□□□ -0.48
CLIP1-204ENST00000501271 CHPF2Q9P2E5 772 aa12.08□□□□□ -0.48
CLIP1-204ENST00000501271 PTMSP20962 102 aa12.08□□□□□ -0.48
CLIP1-204ENST00000501271 SKOR2Q2VWA4 1001 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-204ENST00000501271 UNC5CLQ8IV45 518 aa12.08□□□□□ -0.48
CLIP1-204ENST00000501271 SSH3Q8TE77 659 aa12.08□□□□□ -0.48
CLIP1-204ENST00000501271 STAP2Q9UGK3 403 aa12.08□□□□□ -0.48
CLIP1-204ENST00000501271 TRIM6-TRIM34B2RNG4 842 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 CHMLP26374 656 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 GAS2L3Q86XJ1 694 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 KCNH5Q8NCM2 988 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 RILPL2Q969X0 211 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 SRCIN1Q9C0H9 1055 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 IL1RAPL2Q9NP60 686 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 SLIT3O75094 1523 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 ZNF530Q6P9A1 599 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-204ENST00000501271 PPP1R42Q7Z4L9 355 aa12.07□□□□□ -0.48
CLIP1-204ENST00000501271 ANXA1P04083 346 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 HOXB7P09629 217 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 NBPF7P0C2Y1 421 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-204ENST00000501271 NUCB2P80303 420 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 XPCQ01831 940 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-204ENST00000501271 POLA2Q14181 598 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 RRAGDQ9NQL2 400 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-204ENST00000501271 PALD1Q9ULE6 856 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 ISY1Q9ULR0 285 aaKnown RBP12.06□□□□□ -0.48
CLIP1-204ENST00000501271 NCAPD2Q15021 1401 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 GOLGA6L22H0YM25 854 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 PLEKHG5O94827 1062 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 TRHP20396 242 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-204ENST00000501271 AKAP4Q5JQC9 854 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 MPRIPQ6WCQ1 1025 aa12.06□□□□□ -0.48
CLIP1-204ENST00000501271 CAMTA1Q9Y6Y1 1673 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms