RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 ORAI2Q96SN7 254 aa9.82□□□□□ -0.84
SYNE1-231ENST00000498751 CHMP4BQ9H444 224 aaKnown RBP9.82□□□□□ -0.84
SYNE1-231ENST00000498751 MBIPQ9NS73 344 aa9.82□□□□□ -0.84
SYNE1-231ENST00000498751 PXDNQ92626 1479 aa9.82□□□□□ -0.84
SYNE1-231ENST00000498751 ADAMTS7Q9UKP4 1686 aa9.82□□□□□ -0.84
SYNE1-231ENST00000498751 NPHP3Q7Z494 1330 aa9.82□□□□□ -0.84
SYNE1-231ENST00000498751 MSH6P52701 1360 aa9.81□□□□□ -0.84
SYNE1-231ENST00000498751 CEMIPQ8WUJ3 1361 aa9.81□□□□□ -0.84
SYNE1-231ENST00000498751 GCP02774 474 aa9.81□□□□□ -0.84
SYNE1-231ENST00000498751 DDX19BQ9UMR2 479 aa9.81□□□□□ -0.84
SYNE1-231ENST00000498751 FAM208AQ9UK61 1670 aaKnown RBP9.8□□□□□ -0.84
SYNE1-231ENST00000498751 CPDO75976 1380 aa9.8□□□□□ -0.84
SYNE1-231ENST00000498751 TRIM27P14373 513 aa9.8□□□□□ -0.84
SYNE1-231ENST00000498751 MKRN3Q13064 507 aaKnown RBP9.8□□□□□ -0.84
SYNE1-231ENST00000498751 MTHFSDQ2M296 383 aaKnown RBP9.8□□□□□ -0.84
SYNE1-231ENST00000498751 KRT28Q7Z3Y7 464 aa9.8□□□□□ -0.84
SYNE1-231ENST00000498751 SLAIN1Q8ND83 568 aa9.8□□□□□ -0.84
SYNE1-231ENST00000498751 FAM163AQ96GL9 167 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-231ENST00000498751 SMC4Q9NTJ3 1288 aa9.8□□□□□ -0.84
SYNE1-231ENST00000498751 TNS3Q68CZ2 1445 aa9.8□□□□□ -0.84
SYNE1-231ENST00000498751 COL18A1P39060 1754 aa9.79□□□□□ -0.84
SYNE1-231ENST00000498751 FOXO3O43524 673 aa9.79□□□□□ -0.84
SYNE1-231ENST00000498751 RLBP1P12271 317 aa9.79□□□□□ -0.84
SYNE1-231ENST00000498751 ATF3P18847 181 aa9.79□□□□□ -0.84
SYNE1-231ENST00000498751 TWISTNBQ3B726 338 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-231ENST00000498751 MRPL50Q8N5N7 158 aaKnown RBP9.79□□□□□ -0.84
SYNE1-231ENST00000498751 ABCC4O15439 1325 aa9.79□□□□□ -0.84
SYNE1-231ENST00000498751 MAP3K5Q99683 1374 aa9.78□□□□□ -0.84
SYNE1-231ENST00000498751 HDAC1Q13547 482 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-231ENST00000498751 PANK1Q8TE04 598 aa9.78□□□□□ -0.84
SYNE1-231ENST00000498751 COG6Q9Y2V7 657 aa9.78□□□□□ -0.84
SYNE1-231ENST00000498751 GNAT3A8MTJ3 354 aa9.77□□□□□ -0.85
SYNE1-231ENST00000498751 CANXP27824 592 aaKnown RBP9.77□□□□□ -0.85
SYNE1-231ENST00000498751 AMOTQ4VCS5 1084 aa9.77□□□□□ -0.85
SYNE1-231ENST00000498751 C14orf37Q86TY3 774 aa9.77□□□□□ -0.85
SYNE1-231ENST00000498751 ZBTB40Q9NUA8 1239 aa9.77□□□□□ -0.85
SYNE1-231ENST00000498751 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.77□□□□□ -0.85
SYNE1-231ENST00000498751 NOB1Q9ULX3 412 aaKnown RBP9.77□□□□□ -0.85
SYNE1-231ENST00000498751 PTPRCP08575 1304 aa9.77□□□□□ -0.85
SYNE1-231ENST00000498751 SOS2Q07890 1332 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-231ENST00000498751 SPATA31A3Q5VYP0 1347 aa9.77□□□□□ -0.85
SYNE1-231ENST00000498751 FAM83GA6ND36 823 aa9.76□□□□□ -0.85
SYNE1-231ENST00000498751 HOXB7P09629 217 aa9.76□□□□□ -0.85
SYNE1-231ENST00000498751 TSPYL6Q8N831 410 aa9.76□□□□□ -0.85
SYNE1-231ENST00000498751 RTF1Q92541 710 aaKnown RBP9.76□□□□□ -0.85
SYNE1-231ENST00000498751 FRAT1Q92837 279 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-231ENST00000498751 THUMPD2Q9BTF0 503 aaKnown RBP9.76□□□□□ -0.85
SYNE1-231ENST00000498751 CHMP4AQ9BY43 222 aa9.76□□□□□ -0.85
SYNE1-231ENST00000498751 API5Q9BZZ5 524 aaKnown RBP9.76□□□□□ -0.85
SYNE1-231ENST00000498751 ERBB3P21860 1342 aa9.76□□□□□ -0.85
SYNE1-231ENST00000498751 RGS12O14924 1447 aa9.75□□□□□ -0.85
SYNE1-231ENST00000498751 ILDR1Q86SU0 546 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-231ENST00000498751 FTSJ3Q8IY81 847 aaKnown RBP9.75□□□□□ -0.85
SYNE1-231ENST00000498751 C8orf58Q8NAV2 365 aa9.75□□□□□ -0.85
SYNE1-231ENST00000498751 RNF25Q96BH1 459 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-231ENST00000498751 RBM33Q96EV2 1170 aaKnown RBP9.75□□□□□ -0.85
SYNE1-231ENST00000498751 BACH2Q9BYV9 841 aa9.75□□□□□ -0.85
SYNE1-231ENST00000498751 PCDHB15Q9Y5E8 787 aa9.75□□□□□ -0.85
SYNE1-231ENST00000498751 NHSL1Q5SYE7 1610 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 KDM3BQ7LBC6 1761 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 ZBTB7BO15156 539 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-231ENST00000498751 IGHDP01880 384 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 AKAP4Q5JQC9 854 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 NBPF6Q5VWK0 638 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 INTS3Q68E01 1043 aaKnown RBP9.74□□□□□ -0.85
SYNE1-231ENST00000498751 SMC5Q8IY18 1101 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 IL17REQ8NFR9 667 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 NBPF4Q96M43 638 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 BCL2L13Q9BXK5 485 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 RWDD1Q9H446 243 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-231ENST00000498751 IBTKQ9P2D0 1353 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-231ENST00000498751 HEG1Q9ULI3 1381 aa9.74□□□□□ -0.85
SYNE1-231ENST00000498751 PXDNLA1KZ92 1463 aa9.73□□□□□ -0.85
SYNE1-231ENST00000498751 HSPA2P54652 639 aa9.73□□□□□ -0.85
SYNE1-231ENST00000498751 DCTN1Q14203 1278 aa9.73□□□□□ -0.85
SYNE1-231ENST00000498751 TAF7Q15545 349 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-231ENST00000498751 BRINP3Q76B58 766 aa9.73□□□□□ -0.85
SYNE1-231ENST00000498751 TNNQ9UQP3 1299 aa9.73□□□□□ -0.85
SYNE1-231ENST00000498751 CACNA1FO60840 1977 aa9.73□□□□□ -0.85
SYNE1-231ENST00000498751 N4BP2Q86UW6 1770 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-231ENST00000498751 PLEKHO1Q53GL0 409 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-231ENST00000498751 NUTM2GQ5VZR2 741 aa9.72□□□□□ -0.85
SYNE1-231ENST00000498751 MCM10Q7L590 875 aa9.72□□□□□ -0.85
SYNE1-231ENST00000498751 TMEM57Q8N5G2 664 aa9.72□□□□□ -0.85
SYNE1-231ENST00000498751 MRC1P22897 1456 aa9.72□□□□□ -0.85
SYNE1-231ENST00000498751 PKD1L3Q7Z443 1732 aa9.71□□□□□ -0.85
SYNE1-231ENST00000498751 SIPA1L3O60292 1781 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-231ENST00000498751 SOX12O15370 315 aa9.71□□□□□ -0.86
SYNE1-231ENST00000498751 PDE4AP27815 886 aa9.71□□□□□ -0.86
SYNE1-231ENST00000498751 DPY19L2Q6NUT2 758 aa9.71□□□□□ -0.86
SYNE1-231ENST00000498751 ANKRD24Q8TF21 1146 aa9.71□□□□□ -0.86
SYNE1-231ENST00000498751 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.71□□□□□ -0.86
SYNE1-231ENST00000498751 PARP4Q9UKK3 1724 aaKnown RBP9.7□□□□□ -0.86
SYNE1-231ENST00000498751 TSPYL4Q9UJ04 414 aa9.7□□□□□ -0.86
SYNE1-231ENST00000498751 AXIN2Q9Y2T1 843 aa9.7□□□□□ -0.86
SYNE1-231ENST00000498751 LAS1LQ9Y4W2 734 aaKnown RBP9.7□□□□□ -0.86
SYNE1-231ENST00000498751 ABCA3Q99758 1704 aa9.7□□□□□ -0.86
SYNE1-231ENST00000498751 RGPD2P0DJD1 1756 aa9.7□□□□□ -0.86
SYNE1-231ENST00000498751 RIOK3O14730 519 aaKnown RBP9.69□□□□□ -0.86
SYNE1-231ENST00000498751 FAM161AQ3B820 660 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms