RNA–Protein interactions for RNA: ENST00000497311.5

SMC4-226, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-226ENST00000497311 ZNF530Q6P9A1 599 aaPredicted RBP23.38■■□□□ 1.33
SMC4-226ENST00000497311 AMIGO3Q86WK7 504 aa23.38■■□□□ 1.33
SMC4-226ENST00000497311 UBR3Q6ZT12 1888 aa23.38■■□□□ 1.33
SMC4-226ENST00000497311 ITPK1Q13572 414 aa23.37■■□□□ 1.33
SMC4-226ENST00000497311 AMER1Q5JTC6 1135 aaPredicted RBP23.37■■□□□ 1.33
SMC4-226ENST00000497311 SMIM5Q71RC9 77 aa23.36■■□□□ 1.33
SMC4-226ENST00000497311 AEBP1Q8IUX7 1158 aa23.36■■□□□ 1.33
SMC4-226ENST00000497311 SULT6B1Q6IMI4 303 aa23.35■■□□□ 1.33
SMC4-226ENST00000497311 CD2APQ9Y5K6 639 aa23.35■■□□□ 1.33
SMC4-226ENST00000497311 GNPATO15228 680 aa23.34■■□□□ 1.33
SMC4-226ENST00000497311 IL13P35225 146 aa23.34■■□□□ 1.33
SMC4-226ENST00000497311 CABP4P57796 275 aa23.34■■□□□ 1.33
SMC4-226ENST00000497311 C1orf141Q5JVX7 400 aa23.34■■□□□ 1.33
SMC4-226ENST00000497311 MTHFSP49914 203 aa23.33■■□□□ 1.33
SMC4-226ENST00000497311 RBM42Q9BTD8 480 aaKnown RBP23.33■■□□□ 1.33
SMC4-226ENST00000497311 GOLGB1Q14789 3259 aaKnown RBP23.33■■□□□ 1.32
SMC4-226ENST00000497311 KDM6AO15550 1401 aaPredicted RBP23.32■■□□□ 1.32
SMC4-226ENST00000497311 KDRP35968 1356 aa23.31■■□□□ 1.32
SMC4-226ENST00000497311 GRIN3BO60391 1043 aa23.31■■□□□ 1.32
SMC4-226ENST00000497311 YBX3P16989 372 aaKnown RBP eCLIP23.3■■□□□ 1.32
SMC4-226ENST00000497311 PER1O15534 1290 aaPredicted RBP23.29■■□□□ 1.32
SMC4-226ENST00000497311 SLC4A9Q96Q91 983 aa23.29■■□□□ 1.32
SMC4-226ENST00000497311 RTCBQ9Y3I0 505 aaKnown RBP23.28■■□□□ 1.32
SMC4-226ENST00000497311 TRAPPC3LQ5T215 181 aa23.27■■□□□ 1.32
SMC4-226ENST00000497311 ZNF831Q5JPB2 1677 aa23.26■■□□□ 1.31
SMC4-226ENST00000497311 CC2D1BQ5T0F9 858 aaKnown RBP23.26■■□□□ 1.31
SMC4-226ENST00000497311 RC3H1Q5TC82 1133 aaKnown RBP23.26■■□□□ 1.31
SMC4-226ENST00000497311 NFATC2IPQ8NCF5 419 aa23.26■■□□□ 1.31
SMC4-226ENST00000497311 PTCD1O75127 700 aaKnown RBP23.24■■□□□ 1.31
SMC4-226ENST00000497311 AKAP4Q5JQC9 854 aa23.24■■□□□ 1.31
SMC4-226ENST00000497311 CNTNAP4Q9C0A0 1308 aa23.24■■□□□ 1.31
SMC4-226ENST00000497311 HMOX1P09601 288 aa23.23■■□□□ 1.31
SMC4-226ENST00000497311 DIAPH1O60610 1272 aaKnown RBP23.22■■□□□ 1.31
SMC4-226ENST00000497311 RPS6KA4O75676 772 aa23.22■■□□□ 1.31
SMC4-226ENST00000497311 ADRA2BP18089 450 aa23.22■■□□□ 1.31
SMC4-226ENST00000497311 ARHGEF1Q92888 912 aaKnown RBP23.22■■□□□ 1.31
SMC4-226ENST00000497311 COL5A3P25940 1745 aaPredicted RBP23.22■■□□□ 1.31
SMC4-226ENST00000497311 MMP10P09238 476 aa23.21■■□□□ 1.31
SMC4-226ENST00000497311 NLGN1Q8N2Q7 840 aa23.21■■□□□ 1.31
SMC4-226ENST00000497311 SCN11AQ9UI33 1791 aa23.2■■□□□ 1.3
SMC4-226ENST00000497311 RFC4P35249 363 aa23.19■■□□□ 1.3
SMC4-226ENST00000497311 NPC1L1Q9UHC9 1359 aa23.18■■□□□ 1.3
SMC4-226ENST00000497311 CNGB1Q14028 1251 aaPredicted RBP23.18■■□□□ 1.3
SMC4-226ENST00000497311 SLC52A2Q9HAB3 445 aa23.18■■□□□ 1.3
SMC4-226ENST00000497311 LGR6Q9HBX8 967 aa23.18■■□□□ 1.3
SMC4-226ENST00000497311 MYH14Q7Z406 1995 aaKnown RBP23.18■■□□□ 1.3
SMC4-226ENST00000497311 CRKLP46109 303 aaKnown RBP23.17■■□□□ 1.3
SMC4-226ENST00000497311 RNMTO43148 476 aaKnown RBP23.16■■□□□ 1.3
SMC4-226ENST00000497311 GYS1P13807 737 aa23.16■■□□□ 1.3
SMC4-226ENST00000497311 WWC3Q9ULE0 1092 aa23.16■■□□□ 1.3
SMC4-226ENST00000497311 MTHFSDQ2M296 383 aaKnown RBP23.15■■□□□ 1.3
SMC4-226ENST00000497311 C1QTNF8P60827 252 aa23.14■■□□□ 1.29
SMC4-226ENST00000497311 GIGYF1O75420 1035 aaPredicted RBP23.13■■□□□ 1.29
SMC4-226ENST00000497311 PARP3Q9Y6F1 533 aa23.13■■□□□ 1.29
SMC4-226ENST00000497311 CICQ96RK0 1608 aaPredicted RBP23.12■■□□□ 1.29
SMC4-226ENST00000497311 TGFB2P61812 414 aa23.12■■□□□ 1.29
SMC4-226ENST00000497311 CCDC87Q9NVE4 849 aa23.12■■□□□ 1.29
SMC4-226ENST00000497311 TJP1Q07157 1748 aa23.11■■□□□ 1.29
SMC4-226ENST00000497311 U2SURPO15042 1029 aaKnown RBP23.11■■□□□ 1.29
SMC4-226ENST00000497311 MRC1P22897 1456 aa23.11■■□□□ 1.29
SMC4-226ENST00000497311 SLC39A6Q13433 755 aa23.1■■□□□ 1.29
SMC4-226ENST00000497311 INTS5Q6P9B9 1019 aaKnown RBP23.1■■□□□ 1.29
SMC4-226ENST00000497311 DNAJC10Q8IXB1 793 aa23.1■■□□□ 1.29
SMC4-226ENST00000497311 C4AP0C0L4 1744 aa23.1■■□□□ 1.29
SMC4-226ENST00000497311 VIRMAQ69YN4 1812 aaKnown RBP23.1■■□□□ 1.29
SMC4-226ENST00000497311 KIF13BQ9NQT8 1826 aa23.1■■□□□ 1.29
SMC4-226ENST00000497311 SRP68Q9UHB9 627 aaKnown RBP23.09■■□□□ 1.29
SMC4-226ENST00000497311 COL3A1P02461 1466 aaPredicted RBP23.09■■□□□ 1.29
SMC4-226ENST00000497311 C10orf71Q711Q0 1435 aa23.08■■□□□ 1.29
SMC4-226ENST00000497311 PXDNLA1KZ92 1463 aa23.08■■□□□ 1.29
SMC4-226ENST00000497311 ATP10DQ9P241 1426 aa23.08■■□□□ 1.28
SMC4-226ENST00000497311 USP42Q9H9J4 1324 aaKnown RBP23.08■■□□□ 1.28
SMC4-226ENST00000497311 A0A0G2JLW4 131 aa23.07■■□□□ 1.28
SMC4-226ENST00000497311 ADAMTS7Q9UKP4 1686 aa23.06■■□□□ 1.28
SMC4-226ENST00000497311 CYP19A1P11511 503 aaPredicted RBP23.06■■□□□ 1.28
SMC4-226ENST00000497311 N4BP2Q86UW6 1770 aaPredicted RBP23.05■■□□□ 1.28
SMC4-226ENST00000497311 SENP3-EIF4A1A0A087X0R7 540 aa23.05■■□□□ 1.28
SMC4-226ENST00000497311 FKBP8Q14318 412 aa23.05■■□□□ 1.28
SMC4-226ENST00000497311 GAS2L2Q8NHY3 880 aa23.05■■□□□ 1.28
SMC4-226ENST00000497311 CFAP53Q96M91 514 aa23.05■■□□□ 1.28
SMC4-226ENST00000497311 BCS1LQ9Y276 419 aa23.05■■□□□ 1.28
SMC4-226ENST00000497311 ADCY9O60503 1353 aa23.04■■□□□ 1.28
SMC4-226ENST00000497311 ZPR1O75312 459 aa23.04■■□□□ 1.28
SMC4-226ENST00000497311 VSIG10Q8N0Z9 540 aa23.04■■□□□ 1.28
SMC4-226ENST00000497311 KIAA1551Q9HCM1 1747 aa23.04■■□□□ 1.28
SMC4-226ENST00000497311 KCPQ6ZWJ8 1503 aa23.03■■□□□ 1.28
SMC4-226ENST00000497311 GNAT3A8MTJ3 354 aa23.03■■□□□ 1.28
SMC4-226ENST00000497311 DPEP1P16444 411 aa23.03■■□□□ 1.28
SMC4-226ENST00000497311 TTC5Q8N0Z6 440 aa23.03■■□□□ 1.28
SMC4-226ENST00000497311 GPBP1L1Q9HC44 474 aaPredicted RBP23.03■■□□□ 1.28
SMC4-226ENST00000497311 SOS1Q07889 1333 aaPredicted RBP23.03■■□□□ 1.28
SMC4-226ENST00000497311 TEFQ10587 303 aa23.02■■□□□ 1.28
SMC4-226ENST00000497311 DDR1Q08345 913 aa23.01■■□□□ 1.27
SMC4-226ENST00000497311 USPL1Q5W0Q7 1092 aa23.01■■□□□ 1.27
SMC4-226ENST00000497311 IL17REQ8NFR9 667 aa23.01■■□□□ 1.27
SMC4-226ENST00000497311 ZBTB1Q9Y2K1 713 aa23.01■■□□□ 1.27
SMC4-226ENST00000497311 FCHSD2O94868 740 aa23■■□□□ 1.27
SMC4-226ENST00000497311 NUDCQ9Y266 331 aa23■■□□□ 1.27
SMC4-226ENST00000497311 TM4SF1P30408 202 aa22.99■■□□□ 1.27
SMC4-226ENST00000497311 ZNF526Q8TF50 670 aaPredicted RBP22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms