RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 GCC1Q96CN9 775 aa10.45□□□□□ -0.74
USP54-215ENST00000497106 ARXQ96QS3 562 aa10.45□□□□□ -0.74
USP54-215ENST00000497106 SNRPA1P09661 255 aaKnown RBP10.45□□□□□ -0.74
USP54-215ENST00000497106 THRAP3Q9Y2W1 955 aaKnown RBP10.45□□□□□ -0.74
USP54-215ENST00000497106 OVOS2A0A0G2JMS6 1433 aa10.45□□□□□ -0.74
USP54-215ENST00000497106 ERVV-2B6SEH9 535 aa10.45□□□□□ -0.74
USP54-215ENST00000497106 TRIM27P14373 513 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 RGS3P49796 1198 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 RIC3Q7Z5B4 369 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 RPAP2Q8IXW5 612 aaPredicted RBP10.44□□□□□ -0.74
USP54-215ENST00000497106 DDRGK1Q96HY6 314 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 SRCIN1Q9C0H9 1055 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 C9orf78Q9NZ63 289 aaPredicted RBP10.44□□□□□ -0.74
USP54-215ENST00000497106 STARD3NLO95772 234 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 UBTFL1P0CB47 393 aaPredicted RBP10.44□□□□□ -0.74
USP54-215ENST00000497106 PHKG2P15735 406 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 C8orf58Q8NAV2 365 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 SLC52A2Q9HAB3 445 aa10.44□□□□□ -0.74
USP54-215ENST00000497106 GNAI2P04899 355 aa10.43□□□□□ -0.74
USP54-215ENST00000497106 HSP90B1P14625 803 aaKnown RBP10.43□□□□□ -0.74
USP54-215ENST00000497106 TMEM57Q8N5G2 664 aa10.43□□□□□ -0.74
USP54-215ENST00000497106 PXDNQ92626 1479 aa10.43□□□□□ -0.74
USP54-215ENST00000497106 KIF6Q6ZMV9 814 aa10.43□□□□□ -0.74
USP54-215ENST00000497106 SYTL4Q96C24 671 aaPredicted RBP10.43□□□□□ -0.74
USP54-215ENST00000497106 GPATCH3Q96I76 525 aa10.43□□□□□ -0.74
USP54-215ENST00000497106 FLIIQ13045 1269 aa10.42□□□□□ -0.74
USP54-215ENST00000497106 NECTIN2Q92692 538 aa10.42□□□□□ -0.74
USP54-215ENST00000497106 MIS18AQ9NYP9 233 aa10.42□□□□□ -0.74
USP54-215ENST00000497106 JCADQ9P266 1359 aa10.42□□□□□ -0.74
USP54-215ENST00000497106 NFAT5O94916 1531 aa10.42□□□□□ -0.74
USP54-215ENST00000497106 DDB1Q16531 1140 aa10.42□□□□□ -0.74
USP54-215ENST00000497106 LARP1Q6PKG0 1096 aaKnown RBP10.42□□□□□ -0.74
USP54-215ENST00000497106 SMARCC1Q92922 1105 aaPredicted RBP10.42□□□□□ -0.74
USP54-215ENST00000497106 CRB1P82279 1406 aa10.41□□□□□ -0.74
USP54-215ENST00000497106 IL17REQ8NFR9 667 aa10.41□□□□□ -0.74
USP54-215ENST00000497106 ERBB4Q15303 1308 aa10.41□□□□□ -0.74
USP54-215ENST00000497106 MED1Q15648 1581 aaPredicted RBP10.41□□□□□ -0.74
USP54-215ENST00000497106 CERKQ8TCT0 537 aa10.41□□□□□ -0.74
USP54-215ENST00000497106 SPATA31A6Q5VVP1 1343 aa10.4□□□□□ -0.74
USP54-215ENST00000497106 DNAAF4Q8WXU2 420 aa10.4□□□□□ -0.74
USP54-215ENST00000497106 RBM42Q9BTD8 480 aaKnown RBP10.39□□□□□ -0.75
USP54-215ENST00000497106 ZNF330Q9Y3S2 320 aaPredicted RBP10.39□□□□□ -0.75
USP54-215ENST00000497106 USP54Q70EL1 1684 aa10.39□□□□□ -0.75
USP54-215ENST00000497106 EIF4A1P60842 406 aaKnown RBP10.39□□□□□ -0.75
USP54-215ENST00000497106 C20orf194Q5TEA3 1177 aa10.39□□□□□ -0.75
USP54-215ENST00000497106 ZNF790Q6PG37 636 aa10.39□□□□□ -0.75
USP54-215ENST00000497106 ALDH1L1O75891 902 aa10.39□□□□□ -0.75
USP54-215ENST00000497106 HSP90AB3PQ58FF7 597 aa10.39□□□□□ -0.75
USP54-215ENST00000497106 TSPYL6Q8N831 410 aa10.39□□□□□ -0.75
USP54-215ENST00000497106 RGPD8O14715 1765 aaPredicted RBP10.39□□□□□ -0.75
USP54-215ENST00000497106 AXIN2Q9Y2T1 843 aa10.39□□□□□ -0.75
USP54-215ENST00000497106 HDAC1Q13547 482 aaPredicted RBP10.38□□□□□ -0.75
USP54-215ENST00000497106 ERC1Q8IUD2 1116 aa10.38□□□□□ -0.75
USP54-215ENST00000497106 C8orf37Q96NL8 207 aa10.38□□□□□ -0.75
USP54-215ENST00000497106 FAM161AQ3B820 660 aa10.38□□□□□ -0.75
USP54-215ENST00000497106 BECN1Q14457 450 aa10.38□□□□□ -0.75
USP54-215ENST00000497106 INTS3Q68E01 1043 aaKnown RBP10.38□□□□□ -0.75
USP54-215ENST00000497106 LGR6Q9HBX8 967 aa10.38□□□□□ -0.75
USP54-215ENST00000497106 AIMP1Q12904 312 aaKnown RBP10.37□□□□□ -0.75
USP54-215ENST00000497106 ANKRD45Q5TZF3 282 aa10.37□□□□□ -0.75
USP54-215ENST00000497106 NFATC2IPQ8NCF5 419 aa10.37□□□□□ -0.75
USP54-215ENST00000497106 DDX21Q9NR30 783 aaKnown RBP eCLIP10.37□□□□□ -0.75
USP54-215ENST00000497106 ABCC4O15439 1325 aa10.36□□□□□ -0.75
USP54-215ENST00000497106 KSR2Q6VAB6 950 aa10.36□□□□□ -0.75
USP54-215ENST00000497106 A0A087WZG4 1122 aa10.36□□□□□ -0.75
USP54-215ENST00000497106 NPHP1O15259 732 aa10.36□□□□□ -0.75
USP54-215ENST00000497106 UNC5CLQ8IV45 518 aa10.36□□□□□ -0.75
USP54-215ENST00000497106 CEMIPQ8WUJ3 1361 aa10.36□□□□□ -0.75
USP54-215ENST00000497106 TAF7LQ5H9L4 462 aa10.35□□□□□ -0.75
USP54-215ENST00000497106 CHPF2Q9P2E5 772 aa10.35□□□□□ -0.75
USP54-215ENST00000497106 FAM208AQ9UK61 1670 aaKnown RBP10.35□□□□□ -0.75
USP54-215ENST00000497106 G3BP1Q13283 466 aaKnown RBP eCLIP10.35□□□□□ -0.75
USP54-215ENST00000497106 RAB11FIP3O75154 756 aa10.35□□□□□ -0.75
USP54-215ENST00000497106 PEAK1Q9H792 1746 aa10.35□□□□□ -0.75
USP54-215ENST00000497106 MYL6BP14649 208 aa10.34□□□□□ -0.75
USP54-215ENST00000497106 STRCQ7RTU9 1775 aa10.34□□□□□ -0.75
USP54-215ENST00000497106 USP21Q9UK80 565 aa10.34□□□□□ -0.75
USP54-215ENST00000497106 ZNF652Q9Y2D9 606 aa10.34□□□□□ -0.75
USP54-215ENST00000497106 PDZRN3Q9UPQ7 1066 aa10.34□□□□□ -0.75
USP54-215ENST00000497106 GIGYF1O75420 1035 aaPredicted RBP10.34□□□□□ -0.75
USP54-215ENST00000497106 UBE2Q2Q8WVN8 375 aa10.34□□□□□ -0.75
USP54-215ENST00000497106 COL5A2P05997 1499 aaPredicted RBP10.34□□□□□ -0.75
USP54-215ENST00000497106 TRPM3Q9HCF6 1732 aaPredicted RBP10.33□□□□□ -0.76
USP54-215ENST00000497106 MCCP23508 829 aa10.33□□□□□ -0.76
USP54-215ENST00000497106 ZBTB40Q9NUA8 1239 aa10.33□□□□□ -0.76
USP54-215ENST00000497106 AHDC1Q5TGY3 1603 aaPredicted RBP10.33□□□□□ -0.76
USP54-215ENST00000497106 LTN1O94822 1766 aa10.33□□□□□ -0.76
USP54-215ENST00000497106 PTCD1O75127 700 aaKnown RBP10.33□□□□□ -0.76
USP54-215ENST00000497106 LINS1Q8NG48 757 aa10.33□□□□□ -0.76
USP54-215ENST00000497106 CHMP3Q9Y3E7 222 aa10.33□□□□□ -0.76
USP54-215ENST00000497106 SLC39A6Q13433 755 aa10.33□□□□□ -0.76
USP54-215ENST00000497106 MAP3K2Q9Y2U5 619 aa10.33□□□□□ -0.76
USP54-215ENST00000497106 ANKRD13DQ6ZTN6 518 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 TRPC5Q9UL62 973 aaPredicted RBP10.32□□□□□ -0.76
USP54-215ENST00000497106 ANKRD44Q8N8A2 993 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 ALS2Q96Q42 1657 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 PI4KAP2A4QPH2 592 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 ERC2O15083 957 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 RLBP1P12271 317 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 PDE4AP27815 886 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms