RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 U2AF2P26368 475 aaKnown RBP eCLIP11□□□□□ -0.651e-6■■□□□ 13.6
HPS4-217ENST00000496385 FMN2Q9NZ56 1722 aa11□□□□□ -0.65
HPS4-217ENST00000496385 SYCE3A1L190 88 aa11□□□□□ -0.65
HPS4-217ENST00000496385 HSPA1LP34931 641 aa11□□□□□ -0.65
HPS4-217ENST00000496385 DDX41Q9UJV9 622 aaKnown RBP11□□□□□ -0.65
HPS4-217ENST00000496385 USP32Q8NFA0 1604 aa11□□□□□ -0.65
HPS4-217ENST00000496385 DCCP43146 1447 aa11□□□□□ -0.65
HPS4-217ENST00000496385 PAXIP1Q6ZW49 1069 aaPredicted RBP10.99□□□□□ -0.65
HPS4-217ENST00000496385 ADGRB2O60241 1585 aa10.99□□□□□ -0.65
HPS4-217ENST00000496385 TERF2Q15554 542 aa10.99□□□□□ -0.65
HPS4-217ENST00000496385 RUNDC1Q96C34 613 aa10.99□□□□□ -0.65
HPS4-217ENST00000496385 YY1AP1Q9H869 796 aa10.99□□□□□ -0.65
HPS4-217ENST00000496385 FOXD4L1Q9NU39 408 aa10.99□□□□□ -0.65
HPS4-217ENST00000496385 CABP1Q9NZU7 370 aa10.99□□□□□ -0.65
HPS4-217ENST00000496385 CTNNA3Q9UI47 895 aa10.99□□□□□ -0.65
HPS4-217ENST00000496385 CHD1LQ86WJ1 897 aa10.98□□□□□ -0.65
HPS4-217ENST00000496385 TSC1Q92574 1164 aa10.98□□□□□ -0.65
HPS4-217ENST00000496385 PHF8Q9UPP1 1060 aa10.98□□□□□ -0.65
HPS4-217ENST00000496385 ATP7BP35670 1465 aa10.98□□□□□ -0.65
HPS4-217ENST00000496385 PLCD3Q8N3E9 789 aa10.98□□□□□ -0.65
HPS4-217ENST00000496385 SLC12A5Q9H2X9 1139 aa10.97□□□□□ -0.65
HPS4-217ENST00000496385 ANKRD36BQ8N2N9 1353 aa10.97□□□□□ -0.65
HPS4-217ENST00000496385 RIOK3O14730 519 aaKnown RBP10.97□□□□□ -0.65
HPS4-217ENST00000496385 NGDNQ8NEJ9 315 aaKnown RBP10.97□□□□□ -0.65
HPS4-217ENST00000496385 KIAA1524Q8TCG1 905 aa10.97□□□□□ -0.65
HPS4-217ENST00000496385 EFCC1Q9HA90 598 aa10.97□□□□□ -0.65
HPS4-217ENST00000496385 RBM27Q9P2N5 1060 aaKnown RBP10.97□□□□□ -0.65
HPS4-217ENST00000496385 LMOD2Q6P5Q4 547 aa10.96□□□□□ -0.65
HPS4-217ENST00000496385 GCC1Q96CN9 775 aa10.96□□□□□ -0.65
HPS4-217ENST00000496385 CCDC61Q9Y6R9 512 aa10.96□□□□□ -0.65
HPS4-217ENST00000496385 AK9Q5TCS8 1911 aa10.96□□□□□ -0.65
HPS4-217ENST00000496385 PPIP5K1Q6PFW1 1433 aa10.96□□□□□ -0.65
HPS4-217ENST00000496385 JARID2Q92833 1246 aaPredicted RBP10.96□□□□□ -0.66
HPS4-217ENST00000496385 TNNQ9UQP3 1299 aa10.96□□□□□ -0.66
HPS4-217ENST00000496385 MYOM1P52179 1685 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 CDC45O75419 566 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 TBC1D9Q6ZT07 1266 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 KRT222Q8N1A0 295 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 RGS22Q8NE09 1264 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 ZBTB40Q9NUA8 1239 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 PSME1Q06323 249 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 ACEP12821 1306 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 SBNO2Q9Y2G9 1366 aa10.95□□□□□ -0.66
HPS4-217ENST00000496385 ZBTB22O15209 634 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 ST18O60284 1047 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 NUTM2GQ5VZR2 741 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 GOLGA6L6A8MZA4 724 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 RNF214Q8ND24 703 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 TULP1O00294 542 aaPredicted RBP10.94□□□□□ -0.66
HPS4-217ENST00000496385 NCBP1Q09161 790 aaKnown RBP10.94□□□□□ -0.66
HPS4-217ENST00000496385 ATF7IPQ6VMQ6 1270 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 KRT28Q7Z3Y7 464 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 RBM42Q9BTD8 480 aaKnown RBP10.94□□□□□ -0.66
HPS4-217ENST00000496385 FAM53CQ9NYF3 392 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 USP25Q9UHP3 1055 aa10.94□□□□□ -0.66
HPS4-217ENST00000496385 ANKARQ7Z5J8 1434 aa10.93□□□□□ -0.66
HPS4-217ENST00000496385 SMTNL1A8MU46 457 aa10.93□□□□□ -0.66
HPS4-217ENST00000496385 IGSF3O75054 1194 aa10.93□□□□□ -0.66
HPS4-217ENST00000496385 ZDHHC9Q9Y397 364 aa10.93□□□□□ -0.66
HPS4-217ENST00000496385 PAXBP1Q9Y5B6 917 aa10.93□□□□□ -0.66
HPS4-217ENST00000496385 PHLPP1O60346 1717 aa10.93□□□□□ -0.66
HPS4-217ENST00000496385 IPO8O15397 1037 aaKnown RBP10.93□□□□□ -0.66
HPS4-217ENST00000496385 ZFP91Q96JP5 570 aaPredicted RBP10.93□□□□□ -0.66
HPS4-217ENST00000496385 SHPRHQ149N8 1683 aa10.92□□□□□ -0.66
HPS4-217ENST00000496385 ADCY5O95622 1261 aa10.92□□□□□ -0.66
HPS4-217ENST00000496385 MMP14P50281 582 aa10.92□□□□□ -0.66
HPS4-217ENST00000496385 KIF18AQ8NI77 898 aa10.92□□□□□ -0.66
HPS4-217ENST00000496385 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.92□□□□□ -0.66
HPS4-217ENST00000496385 TCP11L2Q8N4U5 519 aa10.92□□□□□ -0.66
HPS4-217ENST00000496385 LNPKQ9C0E8 428 aa10.92□□□□□ -0.66
HPS4-217ENST00000496385 TTC12Q9H892 705 aaPredicted RBP10.92□□□□□ -0.66
HPS4-217ENST00000496385 GEMIN8Q9NWZ8 242 aaKnown RBP10.92□□□□□ -0.66
HPS4-217ENST00000496385 NPHP3Q7Z494 1330 aa10.92□□□□□ -0.66
HPS4-217ENST00000496385 TRIM27P14373 513 aa10.91□□□□□ -0.66
HPS4-217ENST00000496385 MCM2P49736 904 aa10.91□□□□□ -0.66
HPS4-217ENST00000496385 CTR9Q6PD62 1173 aa10.91□□□□□ -0.66
HPS4-217ENST00000496385 ITPRIPQ8IWB1 547 aa10.91□□□□□ -0.66
HPS4-217ENST00000496385 ATAD2Q6PL18 1390 aa10.91□□□□□ -0.66
HPS4-217ENST00000496385 TOPAZ1Q8N9V7 1692 aa10.91□□□□□ -0.66
HPS4-217ENST00000496385 KDM4AO75164 1064 aa10.91□□□□□ -0.66
HPS4-217ENST00000496385 CAPN2P17655 700 aa10.91□□□□□ -0.66
HPS4-217ENST00000496385 NUTM2BA6NNL0 878 aaPredicted RBP10.9□□□□□ -0.66
HPS4-217ENST00000496385 NUTM2EB1AL46 878 aaPredicted RBP10.9□□□□□ -0.66
HPS4-217ENST00000496385 NUTM2AQ8IVF1 878 aaPredicted RBP10.9□□□□□ -0.66
HPS4-217ENST00000496385 CABLES1Q8TDN4 633 aa10.9□□□□□ -0.66
HPS4-217ENST00000496385 BCL2L13Q9BXK5 485 aa10.9□□□□□ -0.66
HPS4-217ENST00000496385 ITSN1Q15811 1721 aa10.9□□□□□ -0.66
HPS4-217ENST00000496385 PLEKHG3A1L390 1219 aa10.9□□□□□ -0.66
HPS4-217ENST00000496385 TAOK2Q9UL54 1235 aa10.9□□□□□ -0.66
HPS4-217ENST00000496385 NHSL1Q5SYE7 1610 aa10.89□□□□□ -0.67
HPS4-217ENST00000496385 FAM177BA6PVY3 158 aa10.89□□□□□ -0.67
HPS4-217ENST00000496385 BRD1O95696 1058 aa10.89□□□□□ -0.67
HPS4-217ENST00000496385 PKP1Q13835 747 aa10.89□□□□□ -0.67
HPS4-217ENST00000496385 SLFNL1Q499Z3 407 aa10.89□□□□□ -0.67
HPS4-217ENST00000496385 ZNF397Q8NF99 534 aaPredicted RBP10.89□□□□□ -0.67
HPS4-217ENST00000496385 NSFL1CQ9UNZ2 370 aaKnown RBP10.89□□□□□ -0.67
HPS4-217ENST00000496385 COL16A1Q07092 1604 aaPredicted RBP10.89□□□□□ -0.67
HPS4-217ENST00000496385 PXDNQ92626 1479 aa10.89□□□□□ -0.67
HPS4-217ENST00000496385 SOS2Q07890 1332 aaPredicted RBP10.89□□□□□ -0.67
HPS4-217ENST00000496385 USP26Q9BXU7 913 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms