RNA–Protein interactions for RNA: ENST00000496136.5

ECHDC3-205, Transcript of enoyl-CoA hydratase domain containing 3, humanhuman

TSL 1 (best)

Gene ECHDC3, Length 1,767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3-205ENST00000496136 GNAI1P63096 354 aa28.41■■■□□ 2.14
ECHDC3-205ENST00000496136 CHL1O00533 1208 aa28.4■■■□□ 2.14
ECHDC3-205ENST00000496136 TRMT2AQ8IZ69 625 aaKnown RBP28.4■■■□□ 2.14
ECHDC3-205ENST00000496136 MIS18AQ9NYP9 233 aa28.4■■■□□ 2.14
ECHDC3-205ENST00000496136 RGS12O14924 1447 aa28.4■■■□□ 2.14
ECHDC3-205ENST00000496136 TOGARAM1Q9Y4F4 1720 aa28.39■■■□□ 2.14
ECHDC3-205ENST00000496136 PRIM1P49642 420 aaKnown RBP28.37■■■□□ 2.13
ECHDC3-205ENST00000496136 MYH16Q9H6N6 1097 aa28.37■■■□□ 2.13
ECHDC3-205ENST00000496136 SIPA1L3O60292 1781 aaPredicted RBP28.37■■■□□ 2.13
ECHDC3-205ENST00000496136 MRC1P22897 1456 aa28.37■■■□□ 2.13
ECHDC3-205ENST00000496136 DUSP27Q5VZP5 1158 aa28.37■■■□□ 2.13
ECHDC3-205ENST00000496136 TSR2Q969E8 191 aaKnown RBP28.37■■■□□ 2.13
ECHDC3-205ENST00000496136 MBIPQ9NS73 344 aa28.37■■■□□ 2.13
ECHDC3-205ENST00000496136 BTBD11A6QL63 1104 aa28.36■■■□□ 2.13
ECHDC3-205ENST00000496136 ACSBG1Q96GR2 724 aa28.36■■■□□ 2.13
ECHDC3-205ENST00000496136 BABAM1Q9NWV8 329 aa28.36■■■□□ 2.13
ECHDC3-205ENST00000496136 ITGB4P16144 1822 aa28.36■■■□□ 2.13
ECHDC3-205ENST00000496136 BCL9O00512 1426 aa28.35■■■□□ 2.13
ECHDC3-205ENST00000496136 SYTL4Q96C24 671 aaPredicted RBP28.34■■■□□ 2.13
ECHDC3-205ENST00000496136 TMOD3Q9NYL9 352 aa28.34■■■□□ 2.13
ECHDC3-205ENST00000496136 TSPYL4Q9UJ04 414 aa28.34■■■□□ 2.13
ECHDC3-205ENST00000496136 DOT1LQ8TEK3 1739 aa28.34■■■□□ 2.13
ECHDC3-205ENST00000496136 PIGBQ92521 554 aa28.34■■■□□ 2.13
ECHDC3-205ENST00000496136 FANCIQ9NVI1 1328 aa28.33■■■□□ 2.13
ECHDC3-205ENST00000496136 KCNQ2O43526 872 aa28.32■■■□□ 2.12
ECHDC3-205ENST00000496136 FAM196AQ6ZSG2 479 aa28.32■■■□□ 2.12
ECHDC3-205ENST00000496136 SLC39A6Q13433 755 aa28.3■■■□□ 2.12
ECHDC3-205ENST00000496136 KCNQ3O43525 872 aa28.29■■■□□ 2.12
ECHDC3-205ENST00000496136 ZNF790Q6PG37 636 aa28.29■■■□□ 2.12
ECHDC3-205ENST00000496136 SBF2Q86WG5 1849 aa28.28■■■□□ 2.12
ECHDC3-205ENST00000496136 PTF1AQ7RTS3 328 aa28.27■■■□□ 2.12
ECHDC3-205ENST00000496136 KDM3BQ7LBC6 1761 aa28.26■■■□□ 2.12
ECHDC3-205ENST00000496136 EXOSC9Q06265 439 aaKnown RBP28.26■■■□□ 2.11
ECHDC3-205ENST00000496136 ASAP1Q9ULH1 1129 aa28.26■■■□□ 2.11
ECHDC3-205ENST00000496136 EP400Q96L91 3159 aa28.25■■■□□ 2.11
ECHDC3-205ENST00000496136 EIF4A1P60842 406 aaKnown RBP28.24■■■□□ 2.11
ECHDC3-205ENST00000496136 ATG3Q9NT62 314 aa28.24■■■□□ 2.11
ECHDC3-205ENST00000496136 KRT24Q2M2I5 525 aa28.23■■■□□ 2.11
ECHDC3-205ENST00000496136 TTC5Q8N0Z6 440 aa28.23■■■□□ 2.11
ECHDC3-205ENST00000496136 C8orf58Q8NAV2 365 aa28.22■■■□□ 2.11
ECHDC3-205ENST00000496136 NHSQ6T4R5 1651 aa28.21■■■□□ 2.11
ECHDC3-205ENST00000496136 TSPYL6Q8N831 410 aa28.21■■■□□ 2.11
ECHDC3-205ENST00000496136 ZNF496Q96IT1 587 aaPredicted RBP28.21■■■□□ 2.11
ECHDC3-205ENST00000496136 BCL11BQ9C0K0 894 aaPredicted RBP28.21■■■□□ 2.11
ECHDC3-205ENST00000496136 ELL2O00472 640 aaPredicted RBP28.2■■■□□ 2.11
ECHDC3-205ENST00000496136 TRIM37O94972 964 aa28.19■■■□□ 2.1
ECHDC3-205ENST00000496136 PAPPAQ13219 1627 aa28.19■■■□□ 2.1
ECHDC3-205ENST00000496136 HEG1Q9ULI3 1381 aa28.18■■■□□ 2.1
ECHDC3-205ENST00000496136 PTCD1O75127 700 aaKnown RBP28.18■■■□□ 2.1
ECHDC3-205ENST00000496136 FMNL2Q96PY5 1086 aa28.17■■■□□ 2.1
ECHDC3-205ENST00000496136 BTAF1O14981 1849 aa28.17■■■□□ 2.1
ECHDC3-205ENST00000496136 VAMP4O75379 141 aa28.16■■■□□ 2.1
ECHDC3-205ENST00000496136 CENPBP07199 599 aaPredicted RBP28.16■■■□□ 2.1
ECHDC3-205ENST00000496136 TWISTNBQ3B726 338 aaPredicted RBP28.16■■■□□ 2.1
ECHDC3-205ENST00000496136 UBR2Q8IWV8 1755 aa28.16■■■□□ 2.1
ECHDC3-205ENST00000496136 GIGYF1O75420 1035 aaPredicted RBP28.15■■■□□ 2.1
ECHDC3-205ENST00000496136 SMARCC1Q92922 1105 aaPredicted RBP28.15■■■□□ 2.1
ECHDC3-205ENST00000496136 KCPQ6ZWJ8 1503 aa28.14■■■□□ 2.1
ECHDC3-205ENST00000496136 CT47B1P0C2W7 299 aaPredicted RBP28.14■■■□□ 2.09
ECHDC3-205ENST00000496136 RBM42Q9BTD8 480 aaKnown RBP28.13■■■□□ 2.09
ECHDC3-205ENST00000496136 PRAMEF22A3QJZ6 481 aa28.12■■■□□ 2.09
ECHDC3-205ENST00000496136 PALLDQ8WX93 1383 aa28.11■■■□□ 2.09
ECHDC3-205ENST00000496136 SNRPA1P09661 255 aaKnown RBP28.11■■■□□ 2.09
ECHDC3-205ENST00000496136 SOS1Q07889 1333 aaPredicted RBP28.1■■■□□ 2.09
ECHDC3-205ENST00000496136 HOXB7P09629 217 aa28.1■■■□□ 2.09
ECHDC3-205ENST00000496136 SLC4A9Q96Q91 983 aa28.1■■■□□ 2.09
ECHDC3-205ENST00000496136 VSIG10Q8N0Z9 540 aa28.09■■■□□ 2.09
ECHDC3-205ENST00000496136 LOC102724428A0A0B4J2F2 783 aa28.08■■■□□ 2.09
ECHDC3-205ENST00000496136 SIK1P57059 783 aa28.08■■■□□ 2.09
ECHDC3-205ENST00000496136 USP16Q9Y5T5 823 aa28.08■■■□□ 2.09
ECHDC3-205ENST00000496136 ZNF428Q96B54 188 aa28.07■■■□□ 2.08
ECHDC3-205ENST00000496136 RCAN3Q9UKA8 241 aa28.07■■■□□ 2.08
ECHDC3-205ENST00000496136 EIF2S2P20042 333 aaKnown RBP28.06■■■□□ 2.08
ECHDC3-205ENST00000496136 RARSP54136 660 aaKnown RBP28.05■■■□□ 2.08
ECHDC3-205ENST00000496136 C5P01031 1676 aa28.04■■■□□ 2.08
ECHDC3-205ENST00000496136 APBA3O96018 575 aa28.04■■■□□ 2.08
ECHDC3-205ENST00000496136 ATP6V1AP38606 617 aa28.04■■■□□ 2.08
ECHDC3-205ENST00000496136 HDGFL1Q5TGJ6 251 aa28.04■■■□□ 2.08
ECHDC3-205ENST00000496136 DNAJC10Q8IXB1 793 aa28.04■■■□□ 2.08
ECHDC3-205ENST00000496136 NECTIN2Q92692 538 aa28.04■■■□□ 2.08
ECHDC3-205ENST00000496136 TEX13AQ9BXU3 409 aaPredicted RBP28.04■■■□□ 2.08
ECHDC3-205ENST00000496136 SSH1Q8WYL5 1049 aa28.03■■■□□ 2.08
ECHDC3-205ENST00000496136 TCERG1O14776 1098 aaKnown RBP28.02■■■□□ 2.08
ECHDC3-205ENST00000496136 PLSCR1O15162 318 aa28.02■■■□□ 2.08
ECHDC3-205ENST00000496136 CCDC30Q5VVM6 783 aa28.02■■■□□ 2.08
ECHDC3-205ENST00000496136 ALDH1L2Q3SY69 923 aa28.01■■■□□ 2.08
ECHDC3-205ENST00000496136 CHMP4AQ9BY43 222 aa28.01■■■□□ 2.08
ECHDC3-205ENST00000496136 LY75O60449 1722 aa28.01■■■□□ 2.07
ECHDC3-205ENST00000496136 BCAR3O75815 825 aa28■■■□□ 2.07
ECHDC3-205ENST00000496136 KCNQ4P56696 695 aa28■■■□□ 2.07
ECHDC3-205ENST00000496136 ITPK1Q13572 414 aa28■■■□□ 2.07
ECHDC3-205ENST00000496136 BCL2L13Q9BXK5 485 aa28■■■□□ 2.07
ECHDC3-205ENST00000496136 TNS1Q9HBL0 1735 aaKnown RBP28■■■□□ 2.07
ECHDC3-205ENST00000496136 CCNL1Q9UK58 526 aaPredicted RBP27.99■■■□□ 2.07
ECHDC3-205ENST00000496136 ZNF831Q5JPB2 1677 aa27.98■■■□□ 2.07
ECHDC3-205ENST00000496136 STARD3NLO95772 234 aa27.98■■■□□ 2.07
ECHDC3-205ENST00000496136 CYP19A1P11511 503 aaPredicted RBP27.98■■■□□ 2.07
ECHDC3-205ENST00000496136 PROM2Q8N271 834 aa27.97■■■□□ 2.07
ECHDC3-205ENST00000496136 SMC4Q9NTJ3 1288 aa27.97■■■□□ 2.07
ECHDC3-205ENST00000496136 TJP1Q07157 1748 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms