RNA–Protein interactions for RNA: ENST00000495835.1

HLA-C-209, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,073 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-209ENST00000495835 AKAP4Q5JQC9 854 aa32.7■■■□□ 2.83
HLA-C-209ENST00000495835 MSH5O43196 834 aa32.68■■■□□ 2.82
HLA-C-209ENST00000495835 ATP6V1AP38606 617 aa32.68■■■□□ 2.82
HLA-C-209ENST00000495835 UBR3Q6ZT12 1888 aa32.67■■■□□ 2.82
HLA-C-209ENST00000495835 COL3A1P02461 1466 aaPredicted RBP32.67■■■□□ 2.82
HLA-C-209ENST00000495835 SCN11AQ9UI33 1791 aa32.66■■■□□ 2.82
HLA-C-209ENST00000495835 HMOX1P09601 288 aa32.65■■■□□ 2.82
HLA-C-209ENST00000495835 SSFA2P28290 1259 aa32.65■■■□□ 2.82
HLA-C-209ENST00000495835 LINC00116Q8NCU8 138 aa32.64■■■□□ 2.82
HLA-C-209ENST00000495835 ITPK1Q13572 414 aa32.63■■■□□ 2.81
HLA-C-209ENST00000495835 NFATC2IPQ8NCF5 419 aa32.62■■■□□ 2.81
HLA-C-209ENST00000495835 CFAP53Q96M91 514 aa32.62■■■□□ 2.81
HLA-C-209ENST00000495835 CNGB1Q14028 1251 aaPredicted RBP32.61■■■□□ 2.81
HLA-C-209ENST00000495835 RC3H1Q5TC82 1133 aaKnown RBP32.59■■■□□ 2.81
HLA-C-209ENST00000495835 RBM42Q9BTD8 480 aaKnown RBP32.59■■■□□ 2.81
HLA-C-209ENST00000495835 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP32.58■■■□□ 2.81
HLA-C-209ENST00000495835 MTHFSDQ2M296 383 aaKnown RBP32.57■■■□□ 2.8
HLA-C-209ENST00000495835 SLC4A9Q96Q91 983 aa32.57■■■□□ 2.8
HLA-C-209ENST00000495835 U2SURPO15042 1029 aaKnown RBP32.56■■■□□ 2.8
HLA-C-209ENST00000495835 SLC52A2Q9HAB3 445 aa32.56■■■□□ 2.8
HLA-C-209ENST00000495835 COL5A3P25940 1745 aaPredicted RBP32.55■■■□□ 2.8
HLA-C-209ENST00000495835 GNPATO15228 680 aa32.55■■■□□ 2.8
HLA-C-209ENST00000495835 RNMTO43148 476 aaKnown RBP32.55■■■□□ 2.8
HLA-C-209ENST00000495835 ADAMTS7Q9UKP4 1686 aa32.55■■■□□ 2.8
HLA-C-209ENST00000495835 VIRMAQ69YN4 1812 aaKnown RBP32.54■■■□□ 2.8
HLA-C-209ENST00000495835 PPP2R1AP30153 589 aa32.54■■■□□ 2.8
HLA-C-209ENST00000495835 AMIGO3Q86WK7 504 aa32.54■■■□□ 2.8
HLA-C-209ENST00000495835 NUDCQ9Y266 331 aa32.54■■■□□ 2.8
HLA-C-209ENST00000495835 MRC1P22897 1456 aa32.54■■■□□ 2.8
HLA-C-209ENST00000495835 PHF14O94880 888 aa32.53■■■□□ 2.8
HLA-C-209ENST00000495835 LGR6Q9HBX8 967 aa32.53■■■□□ 2.8
HLA-C-209ENST00000495835 CNTNAP4Q9C0A0 1308 aa32.52■■■□□ 2.8
HLA-C-209ENST00000495835 CICQ96RK0 1608 aaPredicted RBP32.52■■■□□ 2.8
HLA-C-209ENST00000495835 RTCBQ9Y3I0 505 aaKnown RBP32.52■■■□□ 2.8
HLA-C-209ENST00000495835 ADRA2BP18089 450 aa32.51■■■□□ 2.79
HLA-C-209ENST00000495835 MSL1Q68DK7 614 aa32.51■■■□□ 2.79
HLA-C-209ENST00000495835 GAS2L2Q8NHY3 880 aa32.51■■■□□ 2.79
HLA-C-209ENST00000495835 PTCD1O75127 700 aaKnown RBP32.49■■■□□ 2.79
HLA-C-209ENST00000495835 TRAPPC3LQ5T215 181 aa32.49■■■□□ 2.79
HLA-C-209ENST00000495835 YY1P25490 414 aa32.48■■■□□ 2.79
HLA-C-209ENST00000495835 UTRNP46939 3433 aa32.48■■■□□ 2.79
HLA-C-209ENST00000495835 RPS6KA4O75676 772 aa32.47■■■□□ 2.79
HLA-C-209ENST00000495835 KLHL34Q8N239 644 aa32.47■■■□□ 2.79
HLA-C-209ENST00000495835 CD2APQ9Y5K6 639 aa32.47■■■□□ 2.79
HLA-C-209ENST00000495835 GNAT3A8MTJ3 354 aa32.45■■■□□ 2.79
HLA-C-209ENST00000495835 SMIM5Q71RC9 77 aa32.44■■■□□ 2.78
HLA-C-209ENST00000495835 MYH14Q7Z406 1995 aaKnown RBP32.44■■■□□ 2.78
HLA-C-209ENST00000495835 RSPH6AQ9H0K4 717 aa32.43■■■□□ 2.78
HLA-C-209ENST00000495835 FCHSD2O94868 740 aa32.42■■■□□ 2.78
HLA-C-209ENST00000495835 TJP1Q07157 1748 aa32.42■■■□□ 2.78
HLA-C-209ENST00000495835 GPR162Q16538 588 aa32.41■■■□□ 2.78
HLA-C-209ENST00000495835 NLGN1Q8N2Q7 840 aa32.41■■■□□ 2.78
HLA-C-209ENST00000495835 ARHGEF1Q92888 912 aaKnown RBP32.41■■■□□ 2.78
HLA-C-209ENST00000495835 PRKAR2BP31323 418 aa32.4■■■□□ 2.78
HLA-C-209ENST00000495835 CRKLP46109 303 aaKnown RBP32.4■■■□□ 2.78
HLA-C-209ENST00000495835 VSIG10Q8N0Z9 540 aa32.4■■■□□ 2.78
HLA-C-209ENST00000495835 NLGN2Q8NFZ4 835 aa32.4■■■□□ 2.78
HLA-C-209ENST00000495835 CHD4Q14839 1912 aa32.39■■■□□ 2.78
HLA-C-209ENST00000495835 U2AF1L5P0DN76 240 aaPredicted RBP32.39■■■□□ 2.78
HLA-C-209ENST00000495835 U2AF1Q01081 240 aaKnown RBP eCLIP32.39■■■□□ 2.78
HLA-C-209ENST00000495835 GOLGB1Q14789 3259 aaKnown RBP32.38■■■□□ 2.77
HLA-C-209ENST00000495835 RFC4P35249 363 aa32.38■■■□□ 2.77
HLA-C-209ENST00000495835 TEFQ10587 303 aa32.37■■■□□ 2.77
HLA-C-209ENST00000495835 IL17REQ8NFR9 667 aa32.37■■■□□ 2.77
HLA-C-209ENST00000495835 SLC39A6Q13433 755 aa32.36■■■□□ 2.77
HLA-C-209ENST00000495835 PHACTR3Q96KR7 559 aa32.36■■■□□ 2.77
HLA-C-209ENST00000495835 KCPQ6ZWJ8 1503 aa32.36■■■□□ 2.77
HLA-C-209ENST00000495835 UBR2Q8IWV8 1755 aa32.35■■■□□ 2.77
HLA-C-209ENST00000495835 CEMIPQ8WUJ3 1361 aa32.34■■■□□ 2.77
HLA-C-209ENST00000495835 SIPA1L3O60292 1781 aaPredicted RBP32.33■■■□□ 2.77
HLA-C-209ENST00000495835 INTS5Q6P9B9 1019 aaKnown RBP32.33■■■□□ 2.77
HLA-C-209ENST00000495835 DNAJC10Q8IXB1 793 aa32.33■■■□□ 2.77
HLA-C-209ENST00000495835 TTC5Q8N0Z6 440 aa32.33■■■□□ 2.77
HLA-C-209ENST00000495835 GRIN3BO60391 1043 aa32.32■■■□□ 2.76
HLA-C-209ENST00000495835 GYS1P13807 737 aa32.32■■■□□ 2.76
HLA-C-209ENST00000495835 CCDC87Q9NVE4 849 aa32.32■■■□□ 2.76
HLA-C-209ENST00000495835 C4AP0C0L4 1744 aa32.31■■■□□ 2.76
HLA-C-209ENST00000495835 MMP10P09238 476 aa32.31■■■□□ 2.76
HLA-C-209ENST00000495835 CYP19A1P11511 503 aaPredicted RBP32.31■■■□□ 2.76
HLA-C-209ENST00000495835 HTATSF1O43719 755 aaKnown RBP32.29■■■□□ 2.76
HLA-C-209ENST00000495835 RALBP1Q15311 655 aa32.29■■■□□ 2.76
HLA-C-209ENST00000495835 ZNF790Q6PG37 636 aa32.29■■■□□ 2.76
HLA-C-209ENST00000495835 PELP1Q8IZL8 1130 aaKnown RBP32.28■■■□□ 2.76
HLA-C-209ENST00000495835 TEX13AQ9BXU3 409 aaPredicted RBP32.28■■■□□ 2.76
HLA-C-209ENST00000495835 USP42Q9H9J4 1324 aaKnown RBP32.26■■■□□ 2.76
HLA-C-209ENST00000495835 RTF1Q92541 710 aaKnown RBP32.26■■■□□ 2.75
HLA-C-209ENST00000495835 STARD3NLO95772 234 aa32.25■■■□□ 2.75
HLA-C-209ENST00000495835 NEFMP07197 916 aa32.25■■■□□ 2.75
HLA-C-209ENST00000495835 KIF13BQ9NQT8 1826 aa32.25■■■□□ 2.75
HLA-C-209ENST00000495835 SOS1Q07889 1333 aaPredicted RBP32.25■■■□□ 2.75
HLA-C-209ENST00000495835 PNNQ9H307 717 aaKnown RBP32.24■■■□□ 2.75
HLA-C-209ENST00000495835 HEG1Q9ULI3 1381 aa32.23■■■□□ 2.75
HLA-C-209ENST00000495835 PARP3Q9Y6F1 533 aa32.23■■■□□ 2.75
HLA-C-209ENST00000495835 YBX3P16989 372 aaKnown RBP eCLIP32.22■■■□□ 2.75
HLA-C-209ENST00000495835 TGFB2P61812 414 aa32.22■■■□□ 2.75
HLA-C-209ENST00000495835 ZNF496Q96IT1 587 aaPredicted RBP32.22■■■□□ 2.75
HLA-C-209ENST00000495835 BTBD11A6QL63 1104 aa32.21■■■□□ 2.75
HLA-C-209ENST00000495835 ZPR1O75312 459 aa32.21■■■□□ 2.75
HLA-C-209ENST00000495835 FMNL2Q96PY5 1086 aa32.21■■■□□ 2.75
HLA-C-209ENST00000495835 DDX10Q13206 875 aaKnown RBP32.2■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms